Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

34191106 .. 34193100

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTGCCTCTACTCTATCTTCTGCTACCACTTCACAGCTATGCTCCAGCAAGAGTGCTATGTTCTCTTCAGCACAGGCCTTGTCTGTGATGCCCAGGAGGACCCAGCTGATGGGAAAGGGAAAGGGAATGAGAATCACATGCCAGGCAGCAATTCCAGCTGATAATGTCCCTGACATGGGTAAGAGGAAGCTCATGAATCTGCTTCTTCTGGGTGCTATTTCACTTCCCTCTGGTTTCATGTTGGTTCCCTATGCCACTTTCTTTGCTCCACCTGGCTCTGGTAGCGGAAGTGGTGGTCAAACTGCCAAGGATGCTCTCGGAAATGATGTGATTGCATCAGAATGGCTCAAGACCCATGGCCCTGGTGACAAGACTCTTACACAAGGGTTGAAGGGTGATCCTACCTACCTTGTTGTGGAGAAAGACAGAACTCTTGCCACATATGGAATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCATTCAACAGTGCCGAGAACAAGTTCATCTGCCCATGCCATGGATCCCAGTACAATGACCAAGGAAGAGTTGTCAGGGGACCTGCTCCTTTGTCTCTGGCTTTGGCTCATGCTGATATTGATGAAGGCAAGGTAATATTTGTTCCTTGGGTCGAAACCGATTTCAGAACCGGTGATGCTCCTTGGTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

227

Amino Acids

23.88

Weight (kDa)

8.53

Isoelectric Point (pI)

26.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TM_PetC	PF25471	54 - 101	6.8e-23	Iron-sulfur subunit PetC transmembrane anchor
Rieske	PF00355	131 - 193	6.7e-10	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccB7I	CCANNNNNTGG	2 cut(s)	112, 527
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	3 cut(s)	395, 525, 538
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 281, 418, 527
AgeI	ACCGGT	1 cut(s)	656
AgsI	TTSAA	2 cut(s)	394, 493
AjnI	CCWGG	4 cut(s)	95, 144, 274, 364
AluBI	AGCT	4 cut(s)	40, 109, 161, 193
AluI	AGCT	4 cut(s)	40, 109, 161, 193
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	1 cut(s)	585
Alw44I	GTGCAC	1 cut(s)	463
AlwI	GGATC	3 cut(s)	395, 525, 538
AoxI	GGCC	2 cut(s)	78, 361
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	5, 149
AsiGI	ACCGGT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	3 cut(s)	102, 362, 566
AsuHPI	GGTGA	4 cut(s)	380, 410, 461, 671
AvaII	GGWCC	2 cut(s)	102, 566
BaeGI	GKGCMC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	4 cut(s)	97, 146, 276, 366
BcoDI	GTCTC	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	2 cut(s)	6, 150
BlsI	GCNGC	2 cut(s)	7, 151
Bme1390I	CCNGG	4 cut(s)	97, 146, 276, 366
Bme18I	GGWCC	2 cut(s)	102, 566
BmgT120I	GGNCC	3 cut(s)	102, 362, 566
BmiI	GGNNCC	4 cut(s)	104, 249, 532, 567
BmrFI	CCNGG	4 cut(s)	97, 146, 276, 366
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	4 cut(s)	81, 304, 347, 652
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	9 cut(s)	95, 309, 358, 364, 472, 526, 547, 632, 668
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 281, 418, 527
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	1 cut(s)	535
BseBI	CCWGG	4 cut(s)	97, 146, 276, 366
BseDI	CCNNGG	9 cut(s)	95, 309, 358, 364, 472, 526, 547, 632, 668
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 281, 418, 527
BseNI	ACTGG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	2 cut(s)	80, 363
BshTI	ACCGGT	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	155, 579
BslI	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 281, 418, 527
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	2 cut(s)	155, 579
BsnI	GGCC	2 cut(s)	80, 363
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	400, 530
Bsp19I	CCATGG	2 cut(s)	358, 526
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	80, 363
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	104, 249, 532, 567
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	3 cut(s)	395, 525, 538
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	9 cut(s)	95, 309, 358, 364, 472, 526, 547, 632, 668
BssMI	GATC	2 cut(s)	400, 530
BssT1I	CCWWGG	7 cut(s)	309, 358, 472, 526, 547, 632, 668
Bst2UI	CCWGG	4 cut(s)	97, 146, 276, 366
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	73, 547
BstDSI	CCRYGG	2 cut(s)	358, 526
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	2 cut(s)	403, 533
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	2 cut(s)	400, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 285, 314
BstNI	CCWGG	4 cut(s)	97, 146, 276, 366
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	4 cut(s)	95, 144, 274, 364
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	530
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	80, 363
BtgI	CCRYGG	2 cut(s)	358, 526
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	577
CciI	TCATGA	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	3 cut(s)	102, 362, 566
Csp6I	GTAC	1 cut(s)	538
CspAI	ACCGGT	1 cut(s)	656
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	8 cut(s)	141, 178, 196, 241, 359, 522, 527, 596
CviQI	GTAC	1 cut(s)	538
DpnI	GATC	2 cut(s)	402, 532
DpnII	GATC	2 cut(s)	400, 530
Eam1104I	CTCTTC	2 cut(s)	73, 547
EarI	CTCTTC	2 cut(s)	73, 547
Eco130I	CCWWGG	7 cut(s)	309, 358, 472, 526, 547, 632, 668
Eco147I	AGGCCT	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	102, 566
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	102, 566
EcoRII	CCWGG	4 cut(s)	95, 144, 274, 364
EcoT14I	CCWWGG	7 cut(s)	309, 358, 472, 526, 547, 632, 668
ErhI	CCWWGG	7 cut(s)	309, 358, 472, 526, 547, 632, 668
FaeI	CATG	8 cut(s)	144, 181, 199, 244, 362, 525, 530, 599
FaqI	GGGAC	2 cut(s)	155, 579
FatI	CATG	8 cut(s)	140, 177, 195, 240, 358, 521, 526, 595
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	6, 150
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	6, 150
GluI	GCNGC	2 cut(s)	6, 150
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	80, 363
HapII	CCGG	1 cut(s)	657
Hin1II	CATG	8 cut(s)	144, 181, 199, 244, 362, 525, 530, 599
HinfI	GANTC	4 cut(s)	135, 199, 376, 450
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	4 cut(s)	380, 410, 461, 671
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	323, 343, 653
Hpy188III	TCNNGA	2 cut(s)	196, 352
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	388, 605
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	2 cut(s)	338, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 285, 314
Hsp92II	CATG	8 cut(s)	144, 181, 199, 244, 362, 525, 530, 599
Kzo9I	GATC	2 cut(s)	400, 530
LmnI	GCTCC	4 cut(s)	50, 274, 577, 670
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	4 cut(s)	81, 304, 347, 652
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	402, 532
MboI	GATC	2 cut(s)	400, 530
MboII	GAAGA	4 cut(s)	12, 60, 200, 564
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	19, 93, 180, 241
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	1 cut(s)	679
MslI	CAYNNNNRTG	2 cut(s)	40, 343
MspA1I	CMGCKG	2 cut(s)	109, 161
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	4 cut(s)	97, 146, 276, 366
MvaI	CCWGG	4 cut(s)	97, 146, 276, 366
MwoI	GCNNNNNNNGC	3 cut(s)	158, 285, 314
NcoI	CCATGG	2 cut(s)	358, 526
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	2 cut(s)	400, 530
NlaIII	CATG	8 cut(s)	144, 181, 199, 244, 362, 525, 530, 599
NlaIV	GGNNCC	4 cut(s)	104, 249, 532, 567
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	144
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	135, 199, 450
PflMI	CCANNNNNTGG	2 cut(s)	112, 527
PinAI	ACCGGT	1 cut(s)	656
PkrI	GCNGC	2 cut(s)	7, 151
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	2 cut(s)	102, 566
Psp5II	RGGWCCY	2 cut(s)	102, 566
Psp6I	CCWGG	4 cut(s)	95, 144, 274, 364
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	4 cut(s)	95, 144, 274, 364
PspN4I	GGNNCC	4 cut(s)	104, 249, 532, 567
PspPI	GGNCC	3 cut(s)	102, 362, 566
PspPPI	RGGWCCY	2 cut(s)	102, 566
PsrI	GAACNNNNNNTAC	2 cut(s)	612, 644
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	2 cut(s)	109, 161
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	2 cut(s)	40, 343
SaqAI	TTAA	1 cut(s)	679
SatI	GCNGC	2 cut(s)	6, 150
Sau3AI	GATC	2 cut(s)	400, 530
Sau96I	GGNCC	3 cut(s)	102, 362, 566
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	4 cut(s)	97, 146, 276, 366
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	4 cut(s)	81, 304, 347, 652
SinI	GGWCC	2 cut(s)	102, 566
SmiMI	CAYNNNNRTG	2 cut(s)	40, 343
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	153
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	288
SspI	AATATT	1 cut(s)	624
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	4 cut(s)	95, 144, 274, 364
StyI	CCWWGG	7 cut(s)	309, 358, 472, 526, 547, 632, 668
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	639
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	3 cut(s)	135, 199, 450
Tru1I	TTAA	1 cut(s)	679
Tru9I	TTAA	1 cut(s)	679
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	5, 149
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	4 cut(s)	212, 229, 502, 624
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	2 cut(s)	112, 527
VneI	GTGCAC	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	102, 566
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.