Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

6206158 .. 6218074

Gene Structure 11917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTGGAAAAGCCGTTGGGTTTAGTCCGACTGGAAAAGAAGTGAAGGTAAAGCAGGTTACTTTAAACACGCTGCTGGAAAGTGGCACGGAGACCCAGATGATAAAGTACCATGGAGGAACGAATTTTGGCCGAACTGCTAATATGCTCTTTGACTACTTATTGGAGAACAATTATAGCTCTGGTGTTGGAAGTGGTGGTCAAGTTGCCAAGGATGCTCTAGGAAATGATGTAATTGCAGCAGAATGGCTTAAGAACCATGGCCCTGGTGACAGGACTTTCACACAAGGATTGAAGGGAGCTCTTAGAGTTTCCATGACAAGTCCAGAATTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTCCAGAGTCGGAAAAGTACCCTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

134

Amino Acids

14.48

Weight (kDa)

9.19

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	124, 329
AdeI	CACNNNGTG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	110, 391
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	265, 393
AluBI	AGCT	3 cut(s)	180, 302, 401
AluI	AGCT	3 cut(s)	180, 302, 401
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	130, 262
ApeKI	GCWGC	3 cut(s)	73, 239, 398
ApoI	RAATTY	2 cut(s)	124, 329
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	60, 251
BciT130I	CCWGG	2 cut(s)	267, 395
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	3 cut(s)	74, 240, 399
BlsI	GCNGC	3 cut(s)	75, 241, 400
Bme1390I	CCNGG	2 cut(s)	267, 395
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	267, 395
BmsI	GCATC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	5 cut(s)	112, 210, 259, 265, 393
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	267, 395
BseDI	CCNNGG	5 cut(s)	112, 210, 259, 265, 393
BseGI	GGATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	60, 251
BshFI	GGCC	2 cut(s)	132, 264
BsiHKAI	GWGCWC	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	132, 264
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp19I	CCATGG	2 cut(s)	112, 259
BspANI	GGCC	2 cut(s)	132, 264
BspMI	ACCTGC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	112, 210, 259, 265, 393
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	3 cut(s)	112, 210, 259
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	267, 395
BstAFI	CTTAAG	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	305, 402
BstDSI	CCRYGG	2 cut(s)	112, 259
BstF5I	GGATG	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	267, 395
BstSCI	CCNGG	2 cut(s)	265, 393
BstV1I	GCAGC	2 cut(s)	60, 251
BstXI	CCANNNNNNTGG	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	132, 264
BtgI	CCRYGG	2 cut(s)	112, 259
BtsCI	GGATG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	109, 390
CviAII	CATG	3 cut(s)	113, 260, 316
CviJI	RGCY	8 cut(s)	14, 132, 180, 250, 264, 302, 343, 401
CviKI_1	RGCY	8 cut(s)	14, 132, 180, 250, 264, 302, 343, 401
CviQI	GTAC	2 cut(s)	109, 390
DdeI	CTNAG	2 cut(s)	305, 402
DraI	TTTAAA	1 cut(s)	66
DraIII	CACNNNGTG	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	3 cut(s)	112, 210, 259
Eco24I	GRGCYC	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	265, 393
EcoT14I	CCWWGG	3 cut(s)	112, 210, 259
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	3 cut(s)	112, 210, 259
FaeI	CATG	3 cut(s)	116, 263, 319
FaiI	YATR	7 cut(s)	114, 146, 177, 261, 317, 339, 348
FatI	CATG	3 cut(s)	112, 259, 315
Fnu4HI	GCNGC	3 cut(s)	74, 240, 399
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	74, 240, 399
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	3 cut(s)	74, 240, 399
HaeIII	GGCC	2 cut(s)	132, 264
Hin1II	CATG	3 cut(s)	116, 263, 319
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	30, 384
Hpy188III	TCNNGA	3 cut(s)	326, 356, 376
HpyAV	CCTTC	2 cut(s)	40, 289
HpyCH4V	TGCA	2 cut(s)	239, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	305, 402
Hsp92II	CATG	3 cut(s)	116, 263, 319
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	60, 251
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	58, 269
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	124, 172, 234, 329
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	3 cut(s)	53, 169, 362
MnlI	CCTC	2 cut(s)	110, 363
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	65, 252
MspCI	CTTAAG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	267, 395
MvaI	CCWGG	2 cut(s)	267, 395
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	2 cut(s)	112, 259
NlaIII	CATG	3 cut(s)	116, 263, 319
NmuCI	GTSAC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	75, 241, 400
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	265, 393
PspGI	CCWGG	2 cut(s)	265, 393
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	110, 391
RsaNI	GTAC	2 cut(s)	109, 390
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	65, 252
SatI	GCNGC	3 cut(s)	74, 240, 399
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	267, 395
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	6 cut(s)	51, 60, 182, 304, 355, 403
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	124, 172, 234, 329
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	265, 393
StyI	CCWWGG	3 cut(s)	112, 210, 259
TasI	AATT	4 cut(s)	124, 172, 234, 329
Tru1I	TTAA	2 cut(s)	65, 252
Tru9I	TTAA	2 cut(s)	65, 252
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	73, 239, 398
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	2 cut(s)	124, 329
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.