Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

22718207 .. 22721263

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTTCCTCTACTCTATCTCCTGCTACCACTTCACAGCTATGCTCAAGCAAGAGTGCAATGTTCTCATCAGCACAAGCCCTTGCTGTGAAACCCAGGAGGACCCAGATGGTAGGAAAGGGAAAGGGAATGAGAGTCACGTGCCAGGCATCAAGTATTGCGGCTGATCGCGTGCCAGACATGGGCAAGAGGAAGCTTATGAACCTGCTTCTTCTGGGTGCAATCTCTCTTCCCAGTGGCATCATGTTGGTTCCTTATGCCACTTTCTTTGTCCCACCTGGCTCCGGGAGTGGCGCTGGTGGTCAAGTTGCCAAGGATGCTCTTGGAAATGACGTGATTGCATCTGAATGGCTTAAGACTCATGGCCCTGGTGACAGGACTCTCACACAAGGATTGAAGGGTGATCCTACATACCTTGTTGTGGAGAAAGACCGAAGTCTTGCCACATATGGAATCAACGCTGTCTGCACTCACCTTGGTTGTGTGGTGCCATTTAACACGGCGGAGAACAAATTCATATGCCCCTGCCATGGATCCCAGTACAATGAACAAGGAAAGGTTGTCAGAGGACCTGCACCCTTGTCTCTGGCGTTGGCTCATGCTGACATTGATGAAGGGAAGGTGGTGTTTGTTCCATGGGTTGAAACAGATTTCAGAACCGGTGACGCTCCATGGTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

228

Amino Acids

23.95

Weight (kDa)

8.92

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	213, 580
AccB1I	GGYRCC	1 cut(s)	487
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	161, 503
AclWI	GGATC	3 cut(s)	398, 528, 541
AcsI	RAATTY	1 cut(s)	512
AcvI	CACGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	4 cut(s)	182, 284, 421, 530
AflII	CTTAAG	1 cut(s)	353
AgeI	ACCGGT	1 cut(s)	659
AgsI	TTSAA	2 cut(s)	397, 644
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	95, 144, 277, 367
AluBI	AGCT	2 cut(s)	40, 196
AluI	AGCT	2 cut(s)	40, 196
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	398, 528, 541
AoxI	GGCC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	512
AsiGI	ACCGGT	1 cut(s)	659
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	102, 365, 569
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	4 cut(s)	383, 413, 464, 674
AvaII	GGWCC	2 cut(s)	102, 569
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	487
BbrPI	CACGTG	1 cut(s)	141
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	4 cut(s)	97, 146, 279, 369
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	2 cut(s)	213, 580
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	5 cut(s)	97, 146, 279, 286, 369
Bme18I	GGWCC	2 cut(s)	102, 569
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	3 cut(s)	102, 365, 569
BmiI	GGNNCC	5 cut(s)	104, 252, 283, 489, 535
BmrFI	CCNGG	5 cut(s)	97, 146, 279, 286, 369
BmrI	ACTGGG	2 cut(s)	228, 532
BmsI	GCATC	4 cut(s)	158, 249, 307, 350
BmuI	ACTGGG	2 cut(s)	228, 532
BoxI	GACNNNNGTC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	7 cut(s)	95, 312, 367, 475, 529, 635, 671
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 284, 421, 530
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	2 cut(s)	234, 538
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	4 cut(s)	97, 146, 279, 369
BseDI	CCNNGG	7 cut(s)	95, 312, 367, 475, 529, 635, 671
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	4 cut(s)	182, 284, 421, 530
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	234, 538
BsgI	GTGCAG	2 cut(s)	451, 558
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	487
BshTI	ACCGGT	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	285, 660
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	182, 284, 421, 530
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	166, 403, 533
Bsp19I	CCATGG	3 cut(s)	529, 635, 671
BspACI	CCGC	2 cut(s)	161, 503
BspANI	GGCC	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	5 cut(s)	104, 252, 283, 489, 535
BspMI	ACCTGC	2 cut(s)	213, 580
BspPI	GGATC	3 cut(s)	398, 528, 541
BspT107I	GGYRCC	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	234, 538
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	7 cut(s)	95, 312, 367, 475, 529, 635, 671
BssMI	GATC	3 cut(s)	166, 403, 533
BssT1I	CCWWGG	5 cut(s)	312, 475, 529, 635, 671
Bst2UI	CCWGG	4 cut(s)	97, 146, 279, 369
Bst6I	CTCTTC	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	3 cut(s)	529, 635, 671
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	3 cut(s)	169, 406, 536
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	3 cut(s)	166, 403, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	4 cut(s)	97, 146, 279, 369
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSCI	CCNGG	5 cut(s)	95, 144, 277, 284, 367
BstUI	CGCG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	366
BtgI	CCRYGG	3 cut(s)	529, 635, 671
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	2 cut(s)	213, 580
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	3 cut(s)	102, 365, 569
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	659
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	7 cut(s)	181, 244, 362, 530, 599, 636, 672
CviJI	RGCY	9 cut(s)	5, 40, 80, 164, 196, 282, 352, 366, 596
CviKI_1	RGCY	9 cut(s)	5, 40, 80, 164, 196, 282, 352, 366, 596
CviQI	GTAC	1 cut(s)	541
DpnI	GATC	3 cut(s)	168, 405, 535
DpnII	GATC	3 cut(s)	166, 403, 533
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	5 cut(s)	312, 475, 529, 635, 671
Eco47I	GGWCC	2 cut(s)	102, 569
Eco72I	CACGTG	1 cut(s)	141
EcoO109I	RGGNCCY	2 cut(s)	102, 569
EcoRII	CCWGG	4 cut(s)	95, 144, 277, 367
EcoT14I	CCWWGG	5 cut(s)	312, 475, 529, 635, 671
ErhI	CCWWGG	5 cut(s)	312, 475, 529, 635, 671
FaeI	CATG	7 cut(s)	184, 247, 365, 533, 602, 639, 675
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	7 cut(s)	180, 243, 361, 529, 598, 635, 671
FauNDI	CATATG	2 cut(s)	448, 518
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	162
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	285, 660
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	7 cut(s)	184, 247, 365, 533, 602, 639, 675
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	135, 358, 379, 453
HpaII	CCGG	2 cut(s)	285, 660
HphI	GGTGA	4 cut(s)	383, 413, 464, 674
Hpy188I	TCNGA	3 cut(s)	346, 566, 656
HpyAV	CCTTC	3 cut(s)	391, 608, 613
HpyCH4IV	ACGT	2 cut(s)	140, 333
HpyCH4V	TGCA	5 cut(s)	59, 221, 341, 468, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	140, 333
Hsp92II	CATG	7 cut(s)	184, 247, 365, 533, 602, 639, 675
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	166, 403, 533
LmnI	GCTCC	2 cut(s)	287, 673
LweI	GCATC	4 cut(s)	158, 249, 307, 350
MaeII	ACGT	2 cut(s)	140, 333
MaeIII	GTNAC	3 cut(s)	136, 371, 662
MalI	GATC	3 cut(s)	168, 405, 535
MboI	GATC	3 cut(s)	166, 403, 533
MboII	GAAGA	2 cut(s)	203, 221
MflI	RGATCY	1 cut(s)	533
MluCI	AATT	1 cut(s)	512
MlyI	GAGTC	3 cut(s)	144, 352, 373
MnlI	CCTC	4 cut(s)	19, 93, 183, 560
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	3 cut(s)	354, 495, 682
MslI	CAYNNNNRTG	2 cut(s)	40, 346
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	285, 660
MspR9I	CCNGG	5 cut(s)	97, 146, 279, 286, 369
MvaI	CCWGG	4 cut(s)	97, 146, 279, 369
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	3 cut(s)	529, 635, 671
NdeI	CATATG	2 cut(s)	448, 518
NdeII	GATC	3 cut(s)	166, 403, 533
NlaIII	CATG	7 cut(s)	184, 247, 365, 533, 602, 639, 675
NlaIV	GGNNCC	5 cut(s)	104, 252, 283, 489, 535
NmuCI	GTSAC	3 cut(s)	136, 371, 662
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	284
PinAI	ACCGGT	1 cut(s)	659
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	3 cut(s)	143, 352, 373
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	3 cut(s)	143, 352, 373
Ppu21I	YACGTR	1 cut(s)	141
PpuMI	RGGWCCY	2 cut(s)	102, 569
PshAI	GACNNNNGTC	1 cut(s)	435
Psp5II	RGGWCCY	2 cut(s)	102, 569
Psp6I	CCWGG	4 cut(s)	95, 144, 277, 367
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	4 cut(s)	95, 144, 277, 367
PspN4I	GGNNCC	5 cut(s)	104, 252, 283, 489, 535
PspPI	GGNCC	3 cut(s)	102, 365, 569
PspPPI	RGGWCCY	2 cut(s)	102, 569
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	40, 346
SaqAI	TTAA	3 cut(s)	354, 495, 682
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	166, 403, 533
Sau96I	GGNCC	3 cut(s)	102, 365, 569
SchI	GAGTC	3 cut(s)	144, 352, 373
ScrFI	CCNGG	5 cut(s)	97, 146, 279, 286, 369
SfaNI	GCATC	4 cut(s)	158, 249, 307, 350
SinI	GGWCC	2 cut(s)	102, 569
SmiMI	CAYNNNNRTG	2 cut(s)	40, 346
SmlI	CTYRAG	2 cut(s)	46, 353
SmoI	CTYRAG	2 cut(s)	46, 353
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	2 cut(s)	161, 503
StyD4I	CCNGG	5 cut(s)	95, 144, 277, 284, 367
StyI	CCWWGG	5 cut(s)	312, 475, 529, 635, 671
TaiI	ACGT	2 cut(s)	143, 336
TaqII	GACCGA	1 cut(s)	447
TasI	AATT	1 cut(s)	512
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	3 cut(s)	354, 495, 682
Tru9I	TTAA	3 cut(s)	354, 495, 682
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	136, 371, 662
Tsp45I	GTSAC	3 cut(s)	136, 371, 662
TspDTI	ATGAA	4 cut(s)	215, 505, 561, 627
TspRI	CASTG	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	102, 569
XapI	RAATTY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.