Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Forward (+)

1549515 .. 1550451

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03495.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTTTGATCAATGCTGGTGCACCAAGAAGTTCCAGTCCAGTTTCAGAAAGTCTTAGATCATTCAAGCCAGAAGGATTCACATTACCAGGTGGTCACAAAGGCTCTGTTCCCAACTTGGGAATGGCCACTTTGGCTCAGAAAACAGCTTTCCAATTCTTTCTTGAACTAGTTGATTTACGGAATCAACATCTTCCTTCGACATATTCTGTACTAAAGAATTCAGGCTTCTTGATAGTGCTGCAAAGAGCAACAATTATGTCAATGCAGCAACAGATGAATGAAGACACATCAGAGCTAGTCATAGAGGCTTCAGACCATAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

109

Amino Acids

11.84

Weight (kDa)

6.26

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	67, 167
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	149, 298
AluI	AGCT	2 cut(s)	149, 298
Alw21I	GWGCWC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	241, 268
ApoI	RAATTY	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	228, 280
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	170, 299
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	242, 269
BlsI	GCNGC	2 cut(s)	243, 270
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	36, 41
BseBI	CCWGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	36, 41
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	228, 280
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	9, 59
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	36, 41
BssMI	GATC	2 cut(s)	9, 59
Bst2UI	CCWGG	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	56, 138
BstKTI	GATC	2 cut(s)	12, 62
BstMBI	GATC	2 cut(s)	9, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	228, 280
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	212
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	56, 138
DpnI	GATC	2 cut(s)	11, 61
DpnII	GATC	2 cut(s)	9, 59
EaeI	YGGCCR	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	88
FaiI	YATR	4 cut(s)	205, 260, 305, 321
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	242, 269
Fsp4HI	GCNGC	2 cut(s)	242, 269
FspBI	CTAG	2 cut(s)	170, 299
GluI	GCNGC	2 cut(s)	242, 269
HaeIII	GGCC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	78, 184
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	49, 141, 295, 316
Hpy188III	TCNNGA	2 cut(s)	164, 232
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	68, 207
HpyCH4V	TGCA	3 cut(s)	23, 244, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	56, 138
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 59
LpnPI	CCDG	7 cut(s)	3, 49, 54, 75, 84, 102, 210
Lsp1109I	GCAGC	2 cut(s)	228, 280
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	2 cut(s)	170, 299
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	11, 61
MboI	GATC	2 cut(s)	9, 59
MboII	GAAGA	2 cut(s)	185, 296
MhlI	GDGCHC	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	155, 220, 255
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	1 cut(s)	301
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	9, 59
NmuCI	GTSAC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	78, 184
PkrI	GCNGC	2 cut(s)	243, 270
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	2 cut(s)	242, 269
Sau3AI	GATC	2 cut(s)	9, 59
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	3 cut(s)	94, 151, 300
SexAI	ACCWGGT	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	3 cut(s)	155, 220, 255
SspMI	CTAG	2 cut(s)	170, 299
StyD4I	CCNGG	1 cut(s)	88
TaqI	TCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	155, 220, 255
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	78, 184
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	241, 268
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	293, 297
TspGWI	ACGGA	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	2 cut(s)	170, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.