Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

12717266 .. 12718655

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G204100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATCCAAGGCTCTACAGATATGCAAAGTCAGGGGACATTTGCTTCCTCAAACAACTTCTTAATGATAATCCCAGCCTACTATATCAACTTACACCTCGCAAAAACACAGCCCTCCATATCGCCGTGCAATTTGGAGACTCAAATGTTGTGGCCGAGATTTATAGCAGATGCAGGTCCCTTCTCACACAGCAAAACTTAGATGGAGATACTCCTTTACATGTGGCTGCAAGGGTTGGTTGCTTCTCTATCTTCAATGATCTGGTCAGAGAAATTTTATCCATGGGGAAAAACACAGTTTTACATGAAGCTGTGAGGAATGGTCACATTAAATTGGTTCAGTTCTTGCTTACAATGGACCCTAAATTAGCGTCTATTGAAAATGATGCGGGAGAGTCTCCAAAGTACCTGGCTGCAAGAGGAGGAATGTTTGAGATTCTGAATCAGATTTTAAAATCAACTGCATCATCAGCTCATGGCGGGTCAGATGGCAGAACAGCCTTGCATGCAGCTGTGGTTGAGAAGCATTTTGACATCGTGGAAGCACTCCTACGATTCAAACAGCAGCTGATCAAAGAAACTGGTCACCAAGGCAGAACTCCTCTCTTCTATGCAGCATCCCTTGGCCAACATAGAACAGTTAAACGATTACTAGAACTTGATACTTCTATTGCATATGTTTTGGACAAAGAGGGCCATTCACCGATTCATGTTGCAGCCAGCAAAGGTCATTCCTCTGTGATTAGAGAGATCATTCGACATTGCCCAGACTCGGGAGAAATTTGTGACCTATATGGACAGAATGCTCTTCATATGGCGATCATTGAAACACCAGAACTGGAGTGCCTCATAAATCAGCCTGATGTCATTGGAAACATGCCTTTGCATCTCGCAACCATAGAAAGAAAGACTTGGATTATGTATTACTTGATGTGGGATGGAAGAGTGCATCAAAGTTCCATGAACAAATGTGGTCAGGCAGCATTTGACATTGATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

334

Amino Acids

37.2

Weight (kDa)

6.97

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AciI	CCGC	2 cut(s)	389, 480
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	153, 625
AcsI	RAATTY	2 cut(s)	273, 780
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	772, 773
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	4 cut(s)	256, 380, 559, 827
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	4 cut(s)	311, 473, 512, 568
AluI	AGCT	4 cut(s)	311, 473, 512, 568
Alw26I	GTCTC	2 cut(s)	132, 402
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	772
AoxI	GGCC	3 cut(s)	153, 625, 694
ApeKI	GCWGC	7 cut(s)	227, 413, 509, 565, 614, 716, 980
ApoI	RAATTY	2 cut(s)	273, 780
AspS9I	GGNCC	3 cut(s)	177, 358, 694
AsuHPI	GGTGA	2 cut(s)	578, 693
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	177, 358
BalI	TGGCCA	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BbvI	GCAGC	7 cut(s)	214, 400, 521, 577, 626, 728, 992
BccI	CCATC	3 cut(s)	197, 482, 932
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	132, 402
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	7 cut(s)	228, 414, 510, 566, 615, 717, 981
BlsI	GCNGC	7 cut(s)	229, 415, 511, 567, 616, 718, 982
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	2 cut(s)	177, 358
BmeT110I	CYCGRG	1 cut(s)	772
BmgT120I	GGNCC	3 cut(s)	177, 358, 694
BmiI	GGNNCC	3 cut(s)	6, 179, 360
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	6 cut(s)	161, 376, 473, 626, 895, 958
BpmI	CTGGAG	1 cut(s)	860
BsaJI	CCNNGG	4 cut(s)	8, 282, 589, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	772, 773
Bse1I	ACTGG	2 cut(s)	586, 843
Bse3DI	GCAATG	1 cut(s)	760
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	4 cut(s)	8, 282, 589, 622
BseGI	GGATG	2 cut(s)	617, 943
BseLI	CCNNNNNNNGG	2 cut(s)	772, 773
BseMI	GCAATG	1 cut(s)	760
BseNI	ACTGG	2 cut(s)	586, 843
BseRI	GAGGAG	2 cut(s)	435, 591
BseXI	GCAGC	7 cut(s)	214, 400, 521, 577, 626, 728, 992
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	3 cut(s)	155, 627, 696
BsiHKCI	CYCGRG	1 cut(s)	772
BslFI	GGGAC	2 cut(s)	50, 163
BslI	CCNNNNNNNGG	2 cut(s)	772, 773
BsmAI	GTCTC	2 cut(s)	132, 402
BsmFI	GGGAC	2 cut(s)	50, 163
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	3 cut(s)	155, 627, 696
BsoBI	CYCGRG	1 cut(s)	772
Bsp143I	GATC	5 cut(s)	4, 259, 570, 750, 819
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	389, 480
BspANI	GGCC	3 cut(s)	155, 627, 696
BspLI	GGNNCC	3 cut(s)	6, 179, 360
BspMI	ACCTGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	760
BsrI	ACTGG	2 cut(s)	586, 843
BssECI	CCNNGG	4 cut(s)	8, 282, 589, 622
BssMI	GATC	5 cut(s)	4, 259, 570, 750, 819
BssT1I	CCWWGG	4 cut(s)	8, 282, 589, 622
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	298, 640
Bst6I	CTCTTC	3 cut(s)	611, 813, 937
BstC8I	GCNNGC	2 cut(s)	507, 721
BstDEI	CTNAG	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	617, 943
BstKTI	GATC	5 cut(s)	7, 262, 573, 753, 822
BstMAI	GTCTC	2 cut(s)	132, 402
BstMBI	GATC	5 cut(s)	4, 259, 570, 750, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 506
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	3 cut(s)	224, 509, 880
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	7 cut(s)	214, 400, 521, 577, 626, 728, 992
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	155, 627, 696
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	617, 943
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	507, 721
CaiI	CAGNNNCTG	1 cut(s)	568
Cfr13I	GGNCC	3 cut(s)	177, 358, 694
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	8 cut(s)	221, 283, 305, 476, 506, 710, 877, 961
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	5 cut(s)	6, 261, 572, 752, 821
DpnII	GATC	5 cut(s)	4, 259, 570, 750, 819
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	2 cut(s)	153, 625
Eam1104I	CTCTTC	3 cut(s)	611, 813, 937
EarI	CTCTTC	3 cut(s)	611, 813, 937
Eco130I	CCWWGG	4 cut(s)	8, 282, 589, 622
Eco47I	GGWCC	2 cut(s)	177, 358
Eco88I	CYCGRG	1 cut(s)	772
Eco91I	GGTNACC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	4 cut(s)	8, 282, 589, 622
ErhI	CCWWGG	4 cut(s)	8, 282, 589, 622
FaeI	CATG	8 cut(s)	224, 286, 308, 479, 509, 713, 880, 964
FalI	AAGNNNNNCTT	2 cut(s)	895, 927
FaqI	GGGAC	2 cut(s)	50, 163
FatI	CATG	8 cut(s)	220, 282, 304, 475, 505, 709, 876, 960
FauI	CCCGC	2 cut(s)	382, 473
FauNDI	CATATG	2 cut(s)	676, 813
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	7 cut(s)	228, 414, 510, 566, 615, 717, 981
FokI	GGATG	2 cut(s)	604, 950
Fsp4HI	GCNGC	7 cut(s)	228, 414, 510, 566, 615, 717, 981
FspBI	CTAG	1 cut(s)	653
GluI	GCNGC	7 cut(s)	228, 414, 510, 566, 615, 717, 981
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	860
HaeIII	GGCC	3 cut(s)	155, 627, 696
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	8 cut(s)	224, 286, 308, 479, 509, 713, 880, 964
HinfI	GANTC	7 cut(s)	140, 395, 436, 442, 555, 706, 770
HphI	GGTGA	2 cut(s)	578, 693
Hpy188I	TCNGA	4 cut(s)	269, 441, 447, 487
Hpy188III	TCNNGA	1 cut(s)	774
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	298, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 506
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	8 cut(s)	224, 286, 308, 479, 509, 713, 880, 964
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	5 cut(s)	4, 259, 570, 750, 819
LguI	GCTCTTC	1 cut(s)	813
Lsp1109I	GCAGC	7 cut(s)	214, 400, 521, 577, 626, 728, 992
LweI	GCATC	6 cut(s)	161, 376, 473, 626, 895, 958
MaeI	CTAG	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	323, 584, 785
MalI	GATC	5 cut(s)	6, 261, 572, 752, 821
MboI	GATC	5 cut(s)	4, 259, 570, 750, 819
MboII	GAAGA	4 cut(s)	244, 598, 800, 954
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	5 cut(s)	131, 273, 332, 365, 780
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	3 cut(s)	134, 404, 764
Mox20I	TGGCCA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	4 cut(s)	63, 330, 452, 642
Msp20I	TGGCCA	1 cut(s)	627
MspA1I	CMGCKG	2 cut(s)	512, 568
MspR9I	CCNGG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	470, 506
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	2 cut(s)	676, 813
NdeII	GATC	5 cut(s)	4, 259, 570, 750, 819
NlaIII	CATG	8 cut(s)	224, 286, 308, 479, 509, 713, 880, 964
NlaIV	GGNNCC	3 cut(s)	6, 179, 360
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	323, 584, 785
NspI	RCATGY	3 cut(s)	224, 509, 880
PaeI	GCATGC	1 cut(s)	509
PciI	ACATGT	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	4 cut(s)	436, 442, 555, 706
PkrI	GCNGC	7 cut(s)	229, 415, 511, 567, 616, 718, 982
PleI	GAGTC	3 cut(s)	134, 403, 764
PpsI	GAGTC	3 cut(s)	134, 403, 764
PpuMI	RGGWCCY	1 cut(s)	177
PscI	ACATGT	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	584
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	6, 179, 360
PspPI	GGNCC	3 cut(s)	177, 358, 694
PspPPI	RGGWCCY	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	512, 568
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	4 cut(s)	63, 330, 452, 642
SatI	GCNGC	7 cut(s)	228, 414, 510, 566, 615, 717, 981
Sau3AI	GATC	5 cut(s)	4, 259, 570, 750, 819
Sau96I	GGNCC	3 cut(s)	177, 358, 694
SchI	GAGTC	3 cut(s)	134, 404, 764
ScrFI	CCNGG	1 cut(s)	410
SfaNI	GCATC	6 cut(s)	161, 376, 473, 626, 895, 958
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	2 cut(s)	177, 358
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	5 cut(s)	131, 273, 332, 365, 780
SsiI	CCGC	2 cut(s)	389, 480
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	4 cut(s)	8, 282, 589, 622
TaaI	ACNGT	2 cut(s)	298, 640
TaqI	TCGA	1 cut(s)	757
TasI	AATT	5 cut(s)	131, 273, 332, 365, 780
TfiI	GAWTC	4 cut(s)	436, 442, 555, 706
Tru1I	TTAA	4 cut(s)	63, 330, 452, 642
Tru9I	TTAA	4 cut(s)	63, 330, 452, 642
TseFI	GTSAC	3 cut(s)	323, 584, 785
TseI	GCWGC	7 cut(s)	227, 413, 509, 565, 614, 716, 980
Tsp45I	GTSAC	3 cut(s)	323, 584, 785
TspDTI	ATGAA	4 cut(s)	321, 698, 800, 977
VpaK11BI	GGWCC	2 cut(s)	177, 358
XapI	RAATTY	2 cut(s)	273, 780
XceI	RCATGY	3 cut(s)	224, 509, 880
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.