Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

12615515 .. 12619759

Gene Structure 4245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G202800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGATCCAAGGCTCTACAAATCTGCAGAATCAGGGAATGTTTGCTTCTTTAAACAACTTCTTAACGATGATCCCATGCTACTATATCAACTTACGCCCCGAGAAAACACTGCACTCCATATCGCCGTGCAATTTGGACACAAAAATGTTACAGTAGAGATTTATAGCAGGTGCAGGGTTGGCCGCTTCTCGATTGTCAATTATCTGAGTTTGGGAATTGACCCCAAATTGGCTTCTTTTGAAAATGAGGCGGGTGAGTCTCCATTGTATCTGGCTGCAAGAGAGGGATTGTTAGATATTCTGAATCAAATTTTACAATCAAGTCCTTCATCAGCTCATGGCGGTTCAGATGGCCAAACAGCTCTGCATGCTGCTGTGGTTGAGAAGCATTTTGATATCATGGAAGCGCTCCTAAGATTCAAACAGCAGCTGATCAAAGAAGCTGACCACCAAGGAAAGACTCCTCTTTACTATGCAGCATCCCTTGGAGACCATAGAACAGTAGAACGATTACTAGAACTCGACATTTCGATAGCATATGTTTTGGATAAACAGGGTTTCTCACCAATTCATGTTGCAGCCAGCAAAGGTCATACCAGTGTGATTAGAGAGATTGTTCGACATTGCCCAGATTCGGGAGAACTTGTTGATCCTTACGGATGGAATGCCCTTCATATTGCAATCTTCAATGGGCAAGCAAACGTTGTCAGATATATACTAGAAACAGCAGAATCTAGTATTACATCTCCCAGGAACATAACTCCAAGCATTTGGGGACATCTCGGTACCCAACATTCATGGTTGGGCAACATCAAGATATCCCCAAGAGCAGAACAAGAAGAAGCCAATGCAGTGCAAACTTACATGCAAATGGGGCAGACCCTGTTGATGGTTGCAACACTTATCACAACTGTAACATTTGCAGCTGCCTTCACAATGCCTGGGGGGTATAACAATGATGTAGGCCCAGACCGAGGGCAGGCTCTTCTGCAGTCAAATAATGATTTCAAGTGGTTCATCATCACAGACACTGTTGCCATGACTTGCTCAATAATTGCAGCTTGCCTTCTGTTTTGGGGAGCTGTCAACAGCAACAAGTCCTCCTATGTTTACTATTTCACAAGTGCTGCTGCTCTTACATATATTGCTCTGCAATCCACCGCAATAGCATTCGAAACAGGGATTAAGGCTGCCATGCCTGATCAGCAATTTCTCAAAACCTTGGGAACCCTAGTCGGAGCGGCTTTTCATGTTATTACCTTCTTGGCTCTTTCCCAGTTGGTGAAAATGTTTTCCCTACCTGAAGCCTGCAGATTCTTCATTTCTCATCTTTGTAAGCTCAAGTGCAAAATCAAGAACAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

456

Amino Acids

50.22

Weight (kDa)

6.73

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	159
Acc65I	GGTACC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	785
AccBSI	CCGCTC	1 cut(s)	1241
AciI	CCGC	5 cut(s)	184, 251, 342, 1161, 1241
AclI	AACGTT	1 cut(s)	702
AclWI	GGATC	3 cut(s)	12, 65, 644
AcoI	YGGCCR	2 cut(s)	181, 352
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	1323
AfaI	GTAC	1 cut(s)	787
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	6 cut(s)	229, 634, 635, 889, 974, 979
AgsI	TTSAA	4 cut(s)	242, 421, 688, 1009
AjnI	CCWGG	2 cut(s)	749, 940
AluBI	AGCT	8 cut(s)	335, 362, 430, 443, 926, 1061, 1082, 1339
AluI	AGCT	8 cut(s)	335, 362, 430, 443, 926, 1061, 1082, 1339
Alw26I	GTCTC	2 cut(s)	264, 483
AlwI	GGATC	3 cut(s)	12, 65, 644
AlwNI	CAGNNNCTG	3 cut(s)	430, 883, 1031
Ama87I	CYCGRG	1 cut(s)	99
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	3 cut(s)	181, 352, 964
ApoI	RAATTY	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	965
AsuHPI	GGTGA	3 cut(s)	266, 555, 1294
AsuII	TTCGAA	1 cut(s)	1173
AvaI	CYCGRG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	785
BccI	CCATC	3 cut(s)	344, 654, 883
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	2 cut(s)	751, 942
BclI	TGATCA	2 cut(s)	432, 1201
BcoDI	GTCTC	2 cut(s)	264, 483
BfaI	CTAG	4 cut(s)	515, 719, 735, 1232
BfmI	CTRYAG	3 cut(s)	24, 989, 1309
BfoI	RGCGCY	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	751, 942
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	965
BmiI	GGNNCC	3 cut(s)	6, 787, 1228
BmrFI	CCNGG	2 cut(s)	751, 942
BmrI	ACTGGG	1 cut(s)	1270
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	1270
Bpu14I	TTCGAA	1 cut(s)	1173
BpuEI	CTTGAG	1 cut(s)	1325
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	7 cut(s)	8, 451, 484, 749, 941, 973, 1221
BsaXI	ACNNNNNCTCC	4 cut(s)	630, 660, 1085, 1115
Bsc4I	CCNNNNNNNGG	6 cut(s)	229, 634, 635, 889, 974, 979
Bse1I	ACTGG	2 cut(s)	597, 1276
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	751, 942
BseDI	CCNNGG	7 cut(s)	8, 451, 484, 749, 941, 973, 1221
BseGI	GGATG	2 cut(s)	479, 665
BseLI	CCNNNNNNNGG	6 cut(s)	229, 634, 635, 889, 974, 979
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	597, 1276
BseRI	GAGGAG	1 cut(s)	453
BsgI	GTGCAG	2 cut(s)	96, 193
BshFI	GGCC	3 cut(s)	183, 354, 966
BshNI	GGYRCC	1 cut(s)	785
BsiHKCI	CYCGRG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	6 cut(s)	229, 634, 635, 889, 974, 979
BsmAI	GTCTC	2 cut(s)	264, 483
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	2 cut(s)	670, 1169
BsnI	GGCC	3 cut(s)	183, 354, 966
Bso31I	GGTCTC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	99
Bsp119I	TTCGAA	1 cut(s)	1173
Bsp143I	GATC	5 cut(s)	4, 70, 432, 649, 1201
BspACI	CCGC	5 cut(s)	184, 251, 342, 1161, 1241
BspANI	GGCC	3 cut(s)	183, 354, 966
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	6, 787, 1228
BspMAI	CTGCAG	3 cut(s)	28, 993, 1313
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	12, 65, 644
BspQI	GCTCTTC	1 cut(s)	990
BspT104I	TTCGAA	1 cut(s)	1173
BspT107I	GGYRCC	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	483
BsrBI	CCGCTC	1 cut(s)	1241
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	597, 1276
BssECI	CCNNGG	7 cut(s)	8, 451, 484, 749, 941, 973, 1221
BssMI	GATC	5 cut(s)	4, 70, 432, 649, 1201
BssT1I	CCWWGG	4 cut(s)	8, 451, 484, 1221
Bst2UI	CCWGG	2 cut(s)	751, 942
Bst4CI	ACNGT	4 cut(s)	154, 502, 913, 1033
Bst6I	CTCTTC	1 cut(s)	990
BstBI	TTCGAA	1 cut(s)	1173
BstC8I	GCNNGC	6 cut(s)	369, 583, 696, 981, 1063, 1309
BstDEI	CTNAG	2 cut(s)	206, 413
BstF5I	GGATG	2 cut(s)	479, 665
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	5 cut(s)	7, 73, 435, 652, 1204
BstMAI	GTCTC	2 cut(s)	264, 483
BstMBI	GATC	5 cut(s)	4, 70, 432, 649, 1201
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 368, 874, 1204
BstNI	CCWGG	2 cut(s)	751, 942
BstNSI	RCATGY	2 cut(s)	371, 868
BstSCI	CCNGG	2 cut(s)	749, 940
BstSFI	CTRYAG	3 cut(s)	24, 989, 1309
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	183, 354, 966
BtsCI	GGATG	2 cut(s)	479, 665
BtsI	GCAGTG	2 cut(s)	108, 858
BtsIMutI	CAGTG	4 cut(s)	108, 604, 858, 1029
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	6 cut(s)	369, 583, 696, 981, 1063, 1309
CaiI	CAGNNNCTG	3 cut(s)	430, 883, 1031
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	965
Csp6I	GTAC	1 cut(s)	786
CviQI	GTAC	1 cut(s)	786
DdeI	CTNAG	2 cut(s)	206, 413
DpnI	GATC	5 cut(s)	6, 72, 434, 651, 1203
DpnII	GATC	5 cut(s)	4, 70, 432, 649, 1201
DraI	TTTAAA	1 cut(s)	52
EaeI	YGGCCR	2 cut(s)	181, 352
Eam1104I	CTCTTC	1 cut(s)	990
EarI	CTCTTC	1 cut(s)	990
Eco130I	CCWWGG	4 cut(s)	8, 451, 484, 1221
Eco31I	GGTCTC	1 cut(s)	483
Eco32I	GATATC	2 cut(s)	397, 819
Eco47III	AGCGCT	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	1323
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	749, 940
EcoRV	GATATC	2 cut(s)	397, 819
EcoT14I	CCWWGG	4 cut(s)	8, 451, 484, 1221
ErhI	CCWWGG	4 cut(s)	8, 451, 484, 1221
FaqI	GGGAC	1 cut(s)	789
FauI	CCCGC	1 cut(s)	244
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	2 cut(s)	432, 1201
FokI	GGATG	2 cut(s)	466, 672
FspBI	CTAG	4 cut(s)	515, 719, 735, 1232
GlaI	GCGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	183, 354, 966
HhaI	GCGC	1 cut(s)	409
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	1087
HindII	GTYRAC	1 cut(s)	1087
HinfI	GANTC	8 cut(s)	29, 257, 304, 417, 460, 632, 731, 1314
HphI	GGTGA	3 cut(s)	266, 555, 1294
Hpy166II	GTNNAC	2 cut(s)	1087, 1111
Hpy188I	TCNGA	5 cut(s)	207, 303, 349, 710, 1238
Hpy188III	TCNNGA	4 cut(s)	190, 636, 814, 1354
Hpy8I	GTNNAC	2 cut(s)	1087, 1111
HpyAV	CCTTC	5 cut(s)	336, 680, 940, 1076, 1270
HpyCH4III	ACNGT	4 cut(s)	154, 502, 913, 1033
HpyCH4IV	ACGT	1 cut(s)	702
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 368, 874, 1204
HpyF3I	CTNAG	2 cut(s)	206, 413
HpySE526I	ACGT	1 cut(s)	702
HspAI	GCGC	1 cut(s)	407
KpnI	GGTACC	1 cut(s)	789
Ksp22I	TGATCA	2 cut(s)	432, 1201
Kzo9I	GATC	5 cut(s)	4, 70, 432, 649, 1201
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	3 cut(s)	414, 1079, 1238
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	4 cut(s)	515, 719, 735, 1232
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	148, 913
MalI	GATC	5 cut(s)	6, 72, 434, 651, 1203
MbiI	CCGCTC	1 cut(s)	1241
MboI	GATC	5 cut(s)	4, 70, 432, 649, 1201
MboII	GAAGA	4 cut(s)	676, 851, 977, 1309
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	8 cut(s)	131, 199, 216, 227, 309, 567, 1053, 1208
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	266, 454
MmeI	TCCRAC	1 cut(s)	1216
MnlI	CCTC	5 cut(s)	241, 277, 474, 968, 1111
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	51, 63, 1185
MslI	CAYNNNNRTG	3 cut(s)	144, 597, 869
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	430, 926
MspR9I	CCNGG	2 cut(s)	751, 942
Mva1269I	GAATGC	2 cut(s)	670, 1169
MvaI	CCWGG	2 cut(s)	751, 942
MwoI	GCNNNNNNNGC	4 cut(s)	180, 368, 874, 1204
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	5 cut(s)	4, 70, 432, 649, 1201
NlaIV	GGNNCC	3 cut(s)	6, 787, 1228
NspI	RCATGY	2 cut(s)	371, 868
NspV	TTCGAA	1 cut(s)	1173
PaeI	GCATGC	1 cut(s)	371
PaqCI	CACCTGC	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	990
PctI	GAATGC	2 cut(s)	670, 1169
PfeI	GAWTC	6 cut(s)	29, 304, 417, 632, 731, 1314
PleI	GAGTC	2 cut(s)	265, 454
PpsI	GAGTC	2 cut(s)	265, 454
Psp1406I	AACGTT	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	749, 940
PspGI	CCWGG	2 cut(s)	749, 940
PspN4I	GGNNCC	3 cut(s)	6, 787, 1228
PspPI	GGNCC	1 cut(s)	965
PstI	CTGCAG	3 cut(s)	28, 993, 1313
PstNI	CAGNNNCTG	3 cut(s)	430, 883, 1031
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	430, 926
RsaI	GTAC	1 cut(s)	787
RsaNI	GTAC	1 cut(s)	786
RseI	CAYNNNNRTG	3 cut(s)	144, 597, 869
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	3 cut(s)	51, 63, 1185
Sau3AI	GATC	5 cut(s)	4, 70, 432, 649, 1201
Sau96I	GGNCC	1 cut(s)	965
SchI	GAGTC	2 cut(s)	266, 454
ScrFI	CCNGG	2 cut(s)	751, 942
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	3 cut(s)	24, 989, 1309
SfuI	TTCGAA	1 cut(s)	1173
SmiMI	CAYNNNNRTG	3 cut(s)	144, 597, 869
SmlI	CTYRAG	1 cut(s)	1340
SmoI	CTYRAG	1 cut(s)	1340
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	8 cut(s)	131, 199, 216, 227, 309, 567, 1053, 1208
SsiI	CCGC	5 cut(s)	184, 251, 342, 1161, 1241
SspMI	CTAG	4 cut(s)	515, 719, 735, 1232
StyD4I	CCNGG	2 cut(s)	749, 940
StyI	CCWWGG	4 cut(s)	8, 451, 484, 1221
TaaI	ACNGT	4 cut(s)	154, 502, 913, 1033
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	5 cut(s)	191, 522, 530, 619, 1173
TaqII	GACCGA	1 cut(s)	987
TasI	AATT	8 cut(s)	131, 199, 216, 227, 309, 567, 1053, 1208
TauI	GCSGC	2 cut(s)	186, 1244
TfiI	GAWTC	6 cut(s)	29, 304, 417, 632, 731, 1314
Tru1I	TTAA	3 cut(s)	51, 63, 1185
Tru9I	TTAA	3 cut(s)	51, 63, 1185
TscAI	CASTG	4 cut(s)	115, 604, 858, 1036
TspDTI	ATGAA	7 cut(s)	318, 560, 662, 786, 1006, 1238, 1309
TspGWI	ACGGA	1 cut(s)	672
TspRI	CASTG	4 cut(s)	115, 604, 858, 1036
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	2 cut(s)	371, 868
XspI	CTAG	4 cut(s)	515, 719, 735, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.