Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

15342056 .. 15342868

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGTACCTCATCGTCATCATGCTAGCAATGCTAGTAACTGTAGGCAATCTTTGGGGGTTTGATGTGGGGGTTGATGGGGCTGGGGAGTGTGGAAGCAACCCGGAGGTTGTGGTATACAACCTTGCTTCATGTGAACCAGCAGCACAAGATGGGAGCGTCGCGGTTTCTCCCAAGTGTTGCTCGTTGGTGAAACGCGTCGACAAGCGTTGTCTTTGTGCCATTGTGCTCTCTAAAGAACTTCAGAGTCGTGGCCTCAACCCAGCAATCGCAGTCACCATACCTAAACGTTGTAATGATCCCAGACGTCCCAAGGGTTACAAGTGCGGAGCTTATACGGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

115

Amino Acids

12.26

Weight (kDa)

8.83

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	31 - 105	4.4e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	38 - 109	8.8e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	340
AccI	GTMKAC	2 cut(s)	117, 201
AccII	CGCG	2 cut(s)	164, 198
AciI	CCGC	2 cut(s)	164, 327
AclI	AACGTT	1 cut(s)	289
AclWI	GGATC	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	196
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	202, 268
AsuNHI	GCTAGC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	71, 146
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	2 cut(s)	26, 35
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	104
BmtI	GCTAGC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	2 cut(s)	83, 262
Bsh1236I	CGCG	2 cut(s)	164, 198
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	164, 327
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	2 cut(s)	164, 198
BspLI	GGNNCC	1 cut(s)	342
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	298
BssNAI	GTATAC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	312
Bst1107I	GTATAC	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	43, 340
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	164, 198
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	2 cut(s)	164, 198
BstV1I	GCAGC	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	27
CseI	GACGC	2 cut(s)	148, 187
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	22, 132
CviJI	RGCY	3 cut(s)	83, 255, 332
CviKI_1	RGCY	3 cut(s)	83, 255, 332
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	25, 135
FaiI	YATR	5 cut(s)	23, 118, 133, 281, 336
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	21, 131
FblI	GTMKAC	2 cut(s)	117, 201
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	26, 35
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	2 cut(s)	87, 266
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	148, 187
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	25, 135
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	202, 268
Hpy166II	GTNNAC	3 cut(s)	118, 137, 202
Hpy188I	TCNGA	1 cut(s)	246
Hpy8I	GTNNAC	3 cut(s)	118, 137, 202
Hpy99I	CGWCG	2 cut(s)	164, 203
HpyCH4III	ACNGT	2 cut(s)	43, 340
HpyCH4IV	ACGT	2 cut(s)	289, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	2 cut(s)	289, 307
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	25, 135
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	156, 329
LpnPI	CCDG	5 cut(s)	69, 117, 153, 276, 316
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	26, 35
MaeII	ACGT	2 cut(s)	289, 307
MaeIII	GTNAC	3 cut(s)	37, 274, 317
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	231
MluI	ACGCGT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	20, 100, 266
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	2 cut(s)	164, 198
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	298
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	25, 135
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	83, 262
PspN4I	GGNNCC	1 cut(s)	342
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	12, 111, 126, 286, 292, 310, 334
SfcI	CTRYAG	1 cut(s)	42
SsiI	CCGC	2 cut(s)	164, 327
SspMI	CTAG	2 cut(s)	26, 35
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	43, 340
TaiI	ACGT	2 cut(s)	292, 310
TaqI	TCGA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	17, 120
XmiI	GTMKAC	2 cut(s)	117, 201
XspI	CTAG	2 cut(s)	26, 35
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.