Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

12644166 .. 12645216

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G203300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAGCCCTCCTACGATTCAAACAGCAGCTGATCAAAGAAGCTGACCACCAAGAACTCGACATTTTGATAGCATATGTTTTGGATCAACGAGGTTTCTCACCAATTCATGTTGCAGCCAGCAAAGGTCATACCAATGTGATTAGAGAGATTGTTCAACATCGCCCAGATTCGGGAGAACTTGTTGACCCTTATGGACGAAATGCTCTTCATATGGCCATTGTTGGTGGCCACGCAAATGAGCCTGATTTTGATGGAAATACGCCTTTGCATCTAGCCACCATTGAAAGAAAAACCTGGATTCTGAGTTACTTGAAGTGGGACGGAAGAGTGAATCTAAGATCCAAGAACAAATATGGCCTAACAGCAATTGACATCGATAGGTCAATCAAAGAAATTGCATCTCCCAAAAATATAGTCCCAAGCATTTGGGGACATCTCCGGACACCGACTTCTTGGTTGGACAGCATCAAGATTCTCTCAAGAGCAGACCAAGAAGAAGCCAATGCAGTGCAAACTTACAAACAAATGGGGCAGACCCTTTTAATGGTTGCAACACTTATCACAACTGTGACGTTTACAGCGGCCTTCACAATGCCTGGAGGCTACAACAACAATATTGGTCCAGACAAAGGGGTGGCTCTTCTGGAATCAAGCAAATATCTCAAACTGTTCATCATCGCAGACACCATTGCCATGACTTTCTCAATAATTGCAGCTTGCCTTCTGTTCTGGGGAGCTGTTAACAGCAACAAGTCCTCCTATGTTTACTATTTCACAAGTGCTGCTACTCTTACATATTTTGCTCTGCAATTCACTGCAGCAGCCTTCACAACAGAAATTGCCACTCCTAGTTCAAATCCGATCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

291

Amino Acids

32.17

Weight (kDa)

7.1

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	3 cut(s)	93, 336, 859
AcoI	YGGCCR	2 cut(s)	216, 229
AfiI	CCNNNNNNNGG	4 cut(s)	172, 173, 547, 632
AgsI	TTSAA	5 cut(s)	22, 158, 287, 316, 858
AjnI	CCWGG	2 cut(s)	296, 598
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	4 cut(s)	31, 44, 719, 740
AluI	AGCT	4 cut(s)	31, 44, 719, 740
AlwI	GGATC	3 cut(s)	93, 336, 859
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	441
AoxI	GGCC	4 cut(s)	216, 229, 358, 585
ApeKI	GCWGC	6 cut(s)	28, 116, 716, 785, 821, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	623
BalI	TGGCCA	2 cut(s)	218, 231
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbvI	GCAGC	6 cut(s)	40, 128, 728, 772, 833, 836
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	298, 600
BclI	TGATCA	1 cut(s)	33
BfaI	CTAG	2 cut(s)	275, 852
BfmI	CTRYAG	1 cut(s)	819
BisI	GCNGC	7 cut(s)	29, 117, 585, 717, 786, 822, 825
BlsI	GCNGC	7 cut(s)	30, 118, 586, 718, 787, 823, 826
Bme1390I	CCNGG	2 cut(s)	298, 600
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	623
BmrFI	CCNGG	2 cut(s)	298, 600
BmsI	GCATC	3 cut(s)	280, 410, 477
BpmI	CTGGAG	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 743, 773
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 173, 547, 632
Bse3DI	GCAATG	1 cut(s)	690
BseAI	TCCGGA	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	298, 600
BseCI	ATCGAT	1 cut(s)	378
BseLI	CCNNNNNNNGG	4 cut(s)	172, 173, 547, 632
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	6 cut(s)	40, 128, 728, 772, 833, 836
BshFI	GGCC	4 cut(s)	218, 231, 360, 587
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	3 cut(s)	335, 404, 447
BslI	CCNNNNNNNGG	4 cut(s)	172, 173, 547, 632
BsmFI	GGGAC	3 cut(s)	335, 404, 447
BsnI	GGCC	4 cut(s)	218, 231, 360, 587
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	4 cut(s)	33, 85, 341, 864
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	4 cut(s)	218, 231, 360, 587
BspCNI	CTCAG	1 cut(s)	297
BspDI	ATCGAT	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	441
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	3 cut(s)	93, 336, 859
BspQI	GCTCTTC	2 cut(s)	213, 648
BsrDI	GCAATG	1 cut(s)	690
BssMI	GATC	4 cut(s)	33, 85, 341, 864
Bst2UI	CCWGG	2 cut(s)	298, 600
Bst4CI	ACNGT	2 cut(s)	571, 672
Bst6I	CTCTTC	3 cut(s)	213, 322, 648
BstC8I	GCNNGC	2 cut(s)	121, 721
BstDEI	CTNAG	2 cut(s)	305, 338
BstKTI	GATC	4 cut(s)	36, 88, 344, 867
BstMBI	GATC	4 cut(s)	33, 85, 341, 864
BstNI	CCWGG	2 cut(s)	298, 600
BstSCI	CCNGG	2 cut(s)	296, 598
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	6 cut(s)	40, 128, 728, 772, 833, 836
BstX2I	RGATCY	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	218, 231, 360, 587
BsuTUI	ATCGAT	1 cut(s)	378
BtgZI	GCGATG	2 cut(s)	146, 664
BtsI	GCAGTG	2 cut(s)	516, 816
BtsIMutI	CAGTG	2 cut(s)	516, 816
Cac8I	GCNNGC	2 cut(s)	121, 721
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	623
ClaI	ATCGAT	1 cut(s)	378
CviAII	CATG	2 cut(s)	110, 697
DdeI	CTNAG	2 cut(s)	305, 338
DpnI	GATC	4 cut(s)	35, 87, 343, 866
DpnII	GATC	4 cut(s)	33, 85, 341, 864
EaeI	YGGCCR	2 cut(s)	216, 229
Eam1104I	CTCTTC	3 cut(s)	213, 322, 648
EarI	CTCTTC	3 cut(s)	213, 322, 648
Eco47I	GGWCC	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	296, 598
FaeI	CATG	2 cut(s)	113, 700
FaqI	GGGAC	3 cut(s)	335, 404, 447
FatI	CATG	2 cut(s)	109, 696
FauNDI	CATATG	2 cut(s)	76, 213
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	7 cut(s)	29, 117, 585, 717, 786, 822, 825
Fsp4HI	GCNGC	7 cut(s)	29, 117, 585, 717, 786, 822, 825
FspBI	CTAG	2 cut(s)	275, 852
GluI	GCNGC	7 cut(s)	29, 117, 585, 717, 786, 822, 825
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	4 cut(s)	218, 231, 360, 587
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	2 cut(s)	113, 700
HincII	GTYRAC	2 cut(s)	187, 745
HindII	GTYRAC	2 cut(s)	187, 745
HinfI	GANTC	6 cut(s)	18, 170, 301, 334, 475, 650
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	4 cut(s)	187, 579, 745, 769
Hpy188I	TCNGA	2 cut(s)	306, 864
Hpy188III	TCNNGA	6 cut(s)	174, 442, 472, 483, 626, 647
Hpy8I	GTNNAC	4 cut(s)	187, 579, 745, 769
HpyAV	CCTTC	3 cut(s)	598, 734, 838
HpyCH4III	ACNGT	2 cut(s)	571, 672
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	9 cut(s)	116, 271, 401, 509, 514, 554, 716, 811, 821
HpyF3I	CTNAG	2 cut(s)	305, 338
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	2 cut(s)	113, 700
Kpn2I	TCCGGA	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	33
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	33, 85, 341, 864
LguI	GCTCTTC	2 cut(s)	213, 648
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	6 cut(s)	40, 128, 728, 772, 833, 836
LweI	GCATC	3 cut(s)	280, 410, 477
MaeI	CTAG	2 cut(s)	275, 852
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	308, 571
MalI	GATC	4 cut(s)	35, 87, 343, 866
MboI	GATC	4 cut(s)	33, 85, 341, 864
MboII	GAAGA	4 cut(s)	200, 339, 509, 635
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	341
MlsI	TGGCCA	2 cut(s)	218, 231
MluCI	AATT	6 cut(s)	105, 369, 396, 711, 812, 840
MluNI	TGGCCA	2 cut(s)	218, 231
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	4 cut(s)	20, 86, 596, 769
Mox20I	TGGCCA	2 cut(s)	218, 231
MroI	TCCGGA	1 cut(s)	441
MscI	TGGCCA	2 cut(s)	218, 231
MseI	TTAA	3 cut(s)	545, 744, 871
MslI	CAYNNNNRTG	4 cut(s)	135, 237, 569, 695
Msp20I	TGGCCA	2 cut(s)	218, 231
MspA1I	CMGCKG	2 cut(s)	31, 584
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	2 cut(s)	298, 600
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	298, 600
NdeI	CATATG	2 cut(s)	76, 213
NdeII	GATC	4 cut(s)	33, 85, 341, 864
NlaIII	CATG	2 cut(s)	113, 700
NmuCI	GTSAC	1 cut(s)	571
OliI	CACNNNNGTG	1 cut(s)	569
PciSI	GCTCTTC	2 cut(s)	213, 648
PfeI	GAWTC	6 cut(s)	18, 170, 301, 334, 475, 650
PkrI	GCNGC	7 cut(s)	30, 118, 586, 718, 787, 823, 826
Psp6I	CCWGG	2 cut(s)	296, 598
PspGI	CCWGG	2 cut(s)	296, 598
PspPI	GGNCC	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	31
RseI	CAYNNNNRTG	4 cut(s)	135, 237, 569, 695
SapI	GCTCTTC	2 cut(s)	213, 648
SaqAI	TTAA	3 cut(s)	545, 744, 871
SatI	GCNGC	7 cut(s)	29, 117, 585, 717, 786, 822, 825
Sau3AI	GATC	4 cut(s)	33, 85, 341, 864
Sau96I	GGNCC	1 cut(s)	623
ScrFI	CCNGG	2 cut(s)	298, 600
SetI	ASST	9 cut(s)	33, 46, 97, 130, 299, 386, 578, 721, 742
SfaNI	GCATC	3 cut(s)	280, 410, 477
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	4 cut(s)	135, 237, 569, 695
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	6 cut(s)	105, 369, 396, 711, 812, 840
SsiI	CCGC	1 cut(s)	584
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	2 cut(s)	275, 852
StyD4I	CCNGG	2 cut(s)	296, 598
TaaI	ACNGT	2 cut(s)	571, 672
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	2 cut(s)	60, 378
TasI	AATT	6 cut(s)	105, 369, 396, 711, 812, 840
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	6 cut(s)	18, 170, 301, 334, 475, 650
Tru1I	TTAA	3 cut(s)	545, 744, 871
Tru9I	TTAA	3 cut(s)	545, 744, 871
TscAI	CASTG	2 cut(s)	516, 823
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	6 cut(s)	28, 116, 716, 785, 821, 824
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	3 cut(s)	98, 200, 664
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	516, 823
VpaK11BI	GGWCC	1 cut(s)	623
XspI	CTAG	2 cut(s)	275, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.