Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

32039208 .. 32039816

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATCCAAGGCTCTACAAATCTGCAAAATCTGGGGCTGTTTGCTTCCTCAGAAAACTTCTTAGTGATAATCCTAGCCTTCTGTATAAACTTACACCTCGAGAAAACACAACCCTCCATATAGCTGCGCAATTCGGACACAAAAATATCGTGGCTGAGATTTATAGCAGATCCGGGTCACTTCTCATGCAGCAAAACTTAGATGGAGATACACCTCTACATGTGGCTGCAAGGTTTGGTCACTTCTCTATTGTCAACTATCTGGTTAGAGATATAATTTCATCAGTGTCAGAGGTAGACCTGGGGCTTGAGACTCTGAGAATTAGAAATAGGGGGAACAACACAGTATTACACGAAGCTTCAAGGAATGGTCACTATAAAGTGGTCGAGTTCTTAATCAAAGTTGATCCTAACTTGGCTTCTGTTGAAAATGATGAGGGTGAGTCTCCATTGTATCTGGCCGCAAGAGGGGGAATGTTAGAGATTGTGAATCAAATTATAAGGACAACTCCGTCATCAGCTTATGGTGGTTCAGATGGCCAAACAGCTTTGCATGCTGCTGTGGTTGAGAGGCATATTGGTATATCATCTATCCTTCAGCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

202

Amino Acids

22.23

Weight (kDa)

7.1

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	7 - 90	3.8e-12	Ankyrin repeats (3 copies)
Ank	PF00023	68 - 90	2.4e-06	Ankyrin repeat
Ank_2	PF12796	117 - 198	5.4e-12	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AasI	GACNNNNNNGTC	1 cut(s)	511
Acc16I	TGCGCA	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	3 cut(s)	12, 165, 401
AcoI	YGGCCR	2 cut(s)	459, 538
AcuI	CTGAAG	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	468
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	363, 428
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	5 cut(s)	125, 359, 521, 548, 601
AluI	AGCT	5 cut(s)	125, 359, 521, 548, 601
Alw26I	GTCTC	2 cut(s)	305, 450
AlwI	GGATC	3 cut(s)	12, 165, 401
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	459, 538
ApeKI	GCWGC	4 cut(s)	125, 190, 227, 557
AspLEI	GCGC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	4 cut(s)	112, 202, 214, 544
BccI	CCATC	2 cut(s)	197, 530
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	305, 450
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	5 cut(s)	126, 191, 228, 462, 558
BlsI	GCNGC	5 cut(s)	127, 192, 229, 463, 559
Bme1390I	CCNGG	2 cut(s)	175, 302
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	175, 302
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	8, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	8, 301
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMII	CTCAG	3 cut(s)	64, 147, 308
BseXI	GCAGC	4 cut(s)	112, 202, 214, 544
BshFI	GGCC	2 cut(s)	461, 540
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	2 cut(s)	305, 450
BsnI	GGCC	2 cut(s)	461, 540
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	4, 170, 406
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	2 cut(s)	461, 540
BspCNI	CTCAG	3 cut(s)	63, 148, 309
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 165, 401
BssECI	CCNNGG	2 cut(s)	8, 301
BssMI	GATC	3 cut(s)	4, 170, 406
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	5 cut(s)	50, 62, 156, 199, 317
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	7, 173, 409
BstMAI	GTCTC	2 cut(s)	305, 450
BstMBI	GATC	3 cut(s)	4, 170, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	2 cut(s)	224, 557
BstSCI	CCNGG	2 cut(s)	173, 300
BstV1I	GCAGC	4 cut(s)	112, 202, 214, 544
BstX2I	RGATCY	2 cut(s)	4, 170
BstYI	RGATCY	2 cut(s)	4, 170
BsuRI	GGCC	2 cut(s)	461, 540
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	130
CviAII	CATG	3 cut(s)	187, 221, 554
DdeI	CTNAG	5 cut(s)	50, 62, 156, 199, 317
DpnI	GATC	3 cut(s)	6, 172, 408
DpnII	GATC	3 cut(s)	4, 170, 406
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	459, 538
Eco130I	CCWWGG	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	190, 224, 557
FatI	CATG	3 cut(s)	186, 220, 553
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	5 cut(s)	126, 191, 228, 462, 558
Fsp4HI	GCNGC	5 cut(s)	126, 191, 228, 462, 558
FspBI	CTAG	1 cut(s)	75
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	126, 191, 228, 462, 558
HaeIII	GGCC	2 cut(s)	461, 540
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	190, 224, 557
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	3 cut(s)	313, 443, 490
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	256, 298
Hpy188I	TCNGA	6 cut(s)	53, 137, 292, 318, 535, 608
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	2 cut(s)	256, 298
HpyAV	CCTTC	2 cut(s)	89, 605
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	26, 190, 230, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	5 cut(s)	50, 62, 156, 199, 317
Hsp92II	CATG	3 cut(s)	190, 224, 557
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	3 cut(s)	4, 170, 406
LpnPI	CCDG	6 cut(s)	18, 187, 248, 287, 314, 443
Lsp1109I	GCAGC	4 cut(s)	112, 202, 214, 544
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	177, 239, 371
MalI	GATC	3 cut(s)	6, 172, 408
MboI	GATC	3 cut(s)	4, 170, 406
MflI	RGATCY	2 cut(s)	4, 170
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	4 cut(s)	131, 276, 321, 495
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	307, 452
MnlI	CCTC	8 cut(s)	59, 108, 125, 225, 286, 430, 461, 564
Mox20I	TGGCCA	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	175, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	4, 170, 406
NlaIII	CATG	3 cut(s)	190, 224, 557
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	177, 239, 371
NsbI	TGCGCA	1 cut(s)	129
NspI	RCATGY	2 cut(s)	224, 557
PaeI	GCATGC	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	99
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	5 cut(s)	127, 192, 229, 463, 559
PleI	GAGTC	2 cut(s)	307, 451
PpsI	GAGTC	2 cut(s)	307, 451
PscI	ACATGT	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 170
PvuII	CAGCTG	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	5 cut(s)	126, 191, 228, 462, 558
Sau3AI	GATC	3 cut(s)	4, 170, 406
SchI	GAGTC	2 cut(s)	307, 452
ScrFI	CCNGG	2 cut(s)	175, 302
Sfr274I	CTCGAG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	99, 308
SmoI	CTYRAG	2 cut(s)	99, 308
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	131, 276, 321, 495
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	173, 300
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	100, 387
TasI	AATT	4 cut(s)	131, 276, 321, 495
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	3 cut(s)	177, 239, 371
TseI	GCWGC	4 cut(s)	125, 190, 227, 557
Tsp45I	GTSAC	3 cut(s)	177, 239, 371
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	291
XceI	RCATGY	2 cut(s)	224, 557
XhoI	CTCGAG	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.