Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

33519974 .. 33522376

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGGCTTGAGACCCTGAGAATTAGAAATAGGGGGAACAGCACAGTATTACACGAAGCTTCAAGGAATGGTCACTATAAAGTGGTCGAGTTCTTAATCAAAGTTGATCCCAACTTGGCTTCTGTTGAAAATGATGAGGGTGTCATGGAAGCTCTGGTAGCATTCAAACAAGAACTTGCCAAAGAAGCTGATCGACAAGGCCGGACTCCTCTCTACTATGCAGCATCCCTAGGTGACCACAGAACAGTTAAGCGATTACTAGAACTTGATACTTCTACTGCATATGTTTTGGATAAAGGTGGTCGTTCACCAATTCATGTTGCAGCTAGGAATGGTCATACCGGTGTGATTAGAGAGATTATCCAACATTGCCCAGATTCGGGAGAACTTATTGACCCTTATGGACAGAATGCTCTTCATATTGCTATTTCCAGTGGACAAGCTAATGTTGTCACATATATATTAGAAACACCAGAACTAGAAGGGTTGATAAATCAGTCTGATATTGATGGAAACACCCCTTTGCATCTAGCGGCGATTGCGAGAAAAACTTGGATTCTTTGGTACTTGATGTGGGATGGAAGAGTAAATCAAAGATCCAAGAACAAATATGGCCAAACAGCATTTGACAGTGATAGATCAATTAAAGAATCTAGTATTACATCTTCCATGATTTCAGCAAGAGCGGACCACGAAGAAGCAATTTCAGCAATGCAAACTTACAAGAAAATGGGTCAGACCCTTTTAATGGTTGCAACACTCATTACAACTGTAACATTTACAGCAGTATTCACAATGCCTGGAGGATACAACAATGATGCAGGCTCATCAGACCGAGGGCTGGCTCTTCTGCAGTCGAGCGAAAATCTAAAAAGTTTCATTGTCTCAGACACCGTTGCTATGACTTGCTCAATTAGTGCAGCTTGCCTCCTATTTTGGGGAGCTGTTAACAGCAAGGAGTGCTATCTTTACTATTTCACAAGTGCCGCTGCTCTTACATATATTGCTCTACAATCGACTGCAATAGCATTCACAACAGGAATTAGAGATGTGCTGCCCCATCAGCAATTCGTGCATACCATGGGACTGGGAGTGGAGGTTGCTTTTCACATCAGTACCTTCTTGTTTCTTTCTCAATTGGTTAAAACGTTTTCCATCCCTGAAGCCTGTAGACTCTTGTTTTCTCATCTCCGTATCAAGTCCAAGAGGGCTAAGAGAGAAAACTGGAGAAATACATGTTTGAAGTTGTGCTTGGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

420

Amino Acids

46.47

Weight (kDa)

8.09

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_4	PF13637	73 - 117	8.1e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	97 - 156	7.5e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	129 - 178	1.8e-06	Ankyrin repeats (many copies)
PGG	PF13962	240 - 348	2.5e-25	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	1171
AciI	CCGC	3 cut(s)	533, 686, 987
AclI	AACGTT	1 cut(s)	1148
AclWI	GGATC	2 cut(s)	101, 591
AcoI	YGGCCR	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	1182
AfaI	GTAC	2 cut(s)	566, 1117
AfiI	CCNNNNNNNGG	5 cut(s)	379, 380, 748, 841, 937
AflIII	ACRYGT	1 cut(s)	1235
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	63, 128, 166, 1243
AjnI	CCWGG	1 cut(s)	799
AjuI	GAANNNNNNNTTGG	1 cut(s)	1235
AluBI	AGCT	7 cut(s)	59, 152, 188, 326, 443, 923, 944
AluI	AGCT	7 cut(s)	59, 152, 188, 326, 443, 923, 944
Alw26I	GTCTC	2 cut(s)	5, 889
AlwI	GGATC	2 cut(s)	101, 591
AoxI	GGCC	3 cut(s)	199, 613, 1254
ApeKI	GCWGC	5 cut(s)	221, 323, 920, 989, 1054
AsiGI	ACCGGT	1 cut(s)	341
AspA2I	CCTAGG	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	2 cut(s)	245, 300
AvaII	GGWCC	1 cut(s)	688
AvrII	CCTAGG	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	1099, 1132
BalI	TGGCCA	1 cut(s)	615
BarI	GAAGNNNNNNTAC	2 cut(s)	649, 681
BbvI	GCAGC	5 cut(s)	233, 335, 932, 976, 1041
BccI	CCATC	4 cut(s)	503, 572, 1068, 1163
BciT130I	CCWGG	1 cut(s)	801
BciVI	GTATCC	1 cut(s)	800
BcoDI	GTCTC	2 cut(s)	5, 889
BfaI	CTAG	6 cut(s)	230, 260, 327, 479, 530, 654
BfmI	CTRYAG	2 cut(s)	851, 1168
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	7 cut(s)	222, 324, 534, 921, 987, 990, 1055
BlnI	CCTAGG	1 cut(s)	229
BlsI	GCNGC	7 cut(s)	223, 325, 535, 922, 988, 991, 1056
Bme1390I	CCNGG	1 cut(s)	801
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmrFI	CCNGG	1 cut(s)	801
BmrI	ACTGGG	1 cut(s)	1097
BmsI	GCATC	3 cut(s)	233, 535, 808
BmuI	ACTGGG	1 cut(s)	1097
BpmI	CTGGAG	2 cut(s)	822, 1246
BpuEI	CTTGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	229, 835, 1080
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	5 cut(s)	379, 380, 748, 841, 937
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	432, 1092, 1229
Bse3DI	GCAATG	2 cut(s)	367, 717
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	229, 835, 1080
BseGI	GGATG	3 cut(s)	224, 583, 1155
BseLI	CCNNNNNNNGG	5 cut(s)	379, 380, 748, 841, 937
BseMI	GCAATG	2 cut(s)	367, 717
BseMII	CTCAG	2 cut(s)	8, 900
BseNI	ACTGG	3 cut(s)	432, 1092, 1229
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	5 cut(s)	233, 335, 932, 976, 1041
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	3 cut(s)	201, 615, 1256
BshTI	ACCGGT	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	202, 342
BslFI	GGGAC	1 cut(s)	1098
BslI	CCNNNNNNNGG	5 cut(s)	379, 380, 748, 841, 937
BsmAI	GTCTC	2 cut(s)	5, 889
BsmFI	GGGAC	1 cut(s)	1098
BsmI	GAATGC	3 cut(s)	161, 415, 1028
BsnI	GGCC	3 cut(s)	201, 615, 1256
Bso31I	GGTCTC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	106, 190, 596, 638
Bsp19I	CCATGG	1 cut(s)	1080
BspACI	CCGC	3 cut(s)	533, 686, 987
BspANI	GGCC	3 cut(s)	201, 615, 1256
BspCNI	CTCAG	2 cut(s)	9, 899
BspHI	TCATGA	1 cut(s)	1259
BspMAI	CTGCAG	1 cut(s)	855
BspPI	GGATC	2 cut(s)	101, 591
BspQI	GCTCTTC	2 cut(s)	420, 852
BspTNI	GGTCTC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	367, 717
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	3 cut(s)	432, 1092, 1229
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	229, 835, 1080
BssMI	GATC	4 cut(s)	106, 190, 596, 638
BssT1I	CCWWGG	2 cut(s)	229, 1080
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	5 cut(s)	46, 247, 632, 772, 895
Bst6I	CTCTTC	3 cut(s)	420, 577, 852
BstAPI	GCANNNNNTGC	2 cut(s)	960, 1072
BstC8I	GCNNGC	3 cut(s)	823, 843, 925
BstDEI	CTNAG	3 cut(s)	17, 886, 1212
BstDSI	CCRYGG	1 cut(s)	1080
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	224, 583, 1155
BstKTI	GATC	4 cut(s)	109, 193, 599, 641
BstMAI	GTCTC	2 cut(s)	5, 889
BstMBI	GATC	4 cut(s)	106, 190, 596, 638
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 185, 539, 707, 960, 1063, 1072
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	1 cut(s)	1239
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	799
BstSFI	CTRYAG	2 cut(s)	851, 1168
BstV1I	GCAGC	5 cut(s)	233, 335, 932, 976, 1041
BstX2I	RGATCY	1 cut(s)	596
BstXI	CCANNNNNNTGG	1 cut(s)	1087
BstYI	RGATCY	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	3 cut(s)	201, 615, 1256
BtgI	CCRYGG	1 cut(s)	1080
BtsCI	GGATG	3 cut(s)	224, 583, 1155
BtsIMutI	CAGTG	2 cut(s)	439, 637
Cac8I	GCNNGC	3 cut(s)	823, 843, 925
CciI	TCATGA	1 cut(s)	1259
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	565, 1116
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	6 cut(s)	145, 317, 670, 1081, 1236, 1260
CviQI	GTAC	2 cut(s)	565, 1116
DdeI	CTNAG	3 cut(s)	17, 886, 1212
DpnI	GATC	4 cut(s)	108, 192, 598, 640
DpnII	GATC	4 cut(s)	106, 190, 596, 638
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	420, 577, 852
EarI	CTCTTC	3 cut(s)	420, 577, 852
Eco130I	CCWWGG	2 cut(s)	229, 1080
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	1182
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	799
EcoT14I	CCWWGG	2 cut(s)	229, 1080
ErhI	CCWWGG	2 cut(s)	229, 1080
FaeI	CATG	6 cut(s)	148, 320, 673, 1084, 1239, 1263
FalI	AAGNNNNNCTT	1 cut(s)	1235
FaqI	GGGAC	1 cut(s)	1098
FatI	CATG	6 cut(s)	144, 316, 669, 1080, 1235, 1259
FauNDI	CATATG	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	1171
Fnu4HI	GCNGC	7 cut(s)	222, 324, 534, 921, 987, 990, 1055
FokI	GGATG	3 cut(s)	211, 590, 1142
Fsp4HI	GCNGC	7 cut(s)	222, 324, 534, 921, 987, 990, 1055
FspBI	CTAG	6 cut(s)	230, 260, 327, 479, 530, 654
GluI	GCNGC	7 cut(s)	222, 324, 534, 921, 987, 990, 1055
GsuI	CTGGAG	2 cut(s)	822, 1246
HaeIII	GGCC	3 cut(s)	201, 615, 1256
HapII	CCGG	2 cut(s)	202, 342
Hin1II	CATG	6 cut(s)	148, 320, 673, 1084, 1239, 1263
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	5 cut(s)	205, 377, 556, 650, 1173
HpaI	GTTAAC	1 cut(s)	949
HpaII	CCGG	2 cut(s)	202, 342
HphI	GGTGA	2 cut(s)	245, 300
Hpy166II	GTNNAC	4 cut(s)	308, 437, 949, 1172
Hpy188I	TCNGA	4 cut(s)	502, 738, 832, 889
Hpy188III	TCNNGA	2 cut(s)	381, 1260
Hpy8I	GTNNAC	4 cut(s)	308, 437, 949, 1172
HpyAV	CCTTC	2 cut(s)	476, 1129
HpyCH4III	ACNGT	5 cut(s)	46, 247, 632, 772, 895
HpyCH4IV	ACGT	1 cut(s)	1148
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 185, 539, 707, 960, 1063, 1072
HpyF3I	CTNAG	3 cut(s)	17, 886, 1212
HpySE526I	ACGT	1 cut(s)	1148
Hsp92II	CATG	6 cut(s)	148, 320, 673, 1084, 1239, 1263
KspAI	GTTAAC	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	106, 190, 596, 638
LguI	GCTCTTC	2 cut(s)	420, 852
LmnI	GCTCC	1 cut(s)	941
Lsp1109I	GCAGC	5 cut(s)	233, 335, 932, 976, 1041
LweI	GCATC	3 cut(s)	233, 535, 808
MaeI	CTAG	6 cut(s)	230, 260, 327, 479, 530, 654
MaeII	ACGT	1 cut(s)	1148
MaeIII	GTNAC	4 cut(s)	71, 233, 451, 772
MalI	GATC	4 cut(s)	108, 192, 598, 640
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	4 cut(s)	106, 190, 596, 638
MboII	GAAGA	5 cut(s)	407, 594, 657, 707, 839
MfeI	CAATTG	1 cut(s)	1136
MflI	RGATCY	1 cut(s)	596
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	8 cut(s)	21, 312, 642, 702, 912, 1041, 1067, 1136
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	2 cut(s)	199, 1167
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	7 cut(s)	130, 219, 797, 830, 938, 1090, 1200
Mox20I	TGGCCA	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	6 cut(s)	95, 249, 645, 746, 948, 1143
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	2 cut(s)	202, 342
MspR9I	CCNGG	1 cut(s)	801
MunI	CAATTG	1 cut(s)	1136
Mva1269I	GAATGC	3 cut(s)	161, 415, 1028
MvaI	CCWGG	1 cut(s)	801
MwoI	GCNNNNNNNGC	7 cut(s)	158, 185, 539, 707, 960, 1063, 1072
NcoI	CCATGG	1 cut(s)	1080
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	4 cut(s)	106, 190, 596, 638
NlaIII	CATG	6 cut(s)	148, 320, 673, 1084, 1239, 1263
NmuCI	GTSAC	3 cut(s)	71, 233, 451
NspI	RCATGY	1 cut(s)	1239
PagI	TCATGA	1 cut(s)	1259
PciI	ACATGT	1 cut(s)	1235
PciSI	GCTCTTC	2 cut(s)	420, 852
PctI	GAATGC	3 cut(s)	161, 415, 1028
PfeI	GAWTC	3 cut(s)	377, 556, 650
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	7 cut(s)	223, 325, 535, 922, 988, 991, 1056
PleI	GAGTC	2 cut(s)	199, 1167
PpsI	GAGTC	2 cut(s)	199, 1167
PscI	ACATGT	1 cut(s)	1235
Psp1406I	AACGTT	1 cut(s)	1148
Psp6I	CCWGG	1 cut(s)	799
PspEI	GGTNACC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	799
PspPI	GGNCC	1 cut(s)	688
PstI	CTGCAG	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	2 cut(s)	566, 1117
RsaNI	GTAC	2 cut(s)	565, 1116
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	2 cut(s)	420, 852
SaqAI	TTAA	6 cut(s)	95, 249, 645, 746, 948, 1143
SatI	GCNGC	7 cut(s)	222, 324, 534, 921, 987, 990, 1055
Sau3AI	GATC	4 cut(s)	106, 190, 596, 638
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	2 cut(s)	199, 1167
ScrFI	CCNGG	1 cut(s)	801
SfaNI	GCATC	3 cut(s)	233, 535, 808
SfcI	CTRYAG	2 cut(s)	851, 1168
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	8 cut(s)	21, 312, 642, 702, 912, 1041, 1067, 1136
SsiI	CCGC	3 cut(s)	533, 686, 987
SspMI	CTAG	6 cut(s)	230, 260, 327, 479, 530, 654
StyD4I	CCNGG	1 cut(s)	799
StyI	CCWWGG	2 cut(s)	229, 1080
TaaI	ACNGT	5 cut(s)	46, 247, 632, 772, 895
TaiI	ACGT	1 cut(s)	1151
TaqI	TCGA	4 cut(s)	87, 193, 857, 1016
TaqII	GACCGA	1 cut(s)	849
TasI	AATT	8 cut(s)	21, 312, 642, 702, 912, 1041, 1067, 1136
TauI	GCSGC	2 cut(s)	536, 989
TfiI	GAWTC	3 cut(s)	377, 556, 650
Tru1I	TTAA	6 cut(s)	95, 249, 645, 746, 948, 1143
Tru9I	TTAA	6 cut(s)	95, 249, 645, 746, 948, 1143
TscAI	CASTG	2 cut(s)	439, 637
TseFI	GTSAC	3 cut(s)	71, 233, 451
TseI	GCWGC	5 cut(s)	221, 323, 920, 989, 1054
Tsp45I	GTSAC	3 cut(s)	71, 233, 451
TspDTI	ATGAA	3 cut(s)	305, 407, 868
TspGWI	ACGGA	1 cut(s)	1181
TspRI	CASTG	2 cut(s)	439, 637
VpaK11BI	GGWCC	1 cut(s)	688
XceI	RCATGY	1 cut(s)	1239
XmaJI	CCTAGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	1171
XspI	CTAG	6 cut(s)	230, 260, 327, 479, 530, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.