Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

37438219 .. 37461175

Gene Structure 22957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGTTAGGAGGGACGGTGGGGGGCGGATCTGCTTGGAGCGAGGAAGGTTGTGGTGAGAATACGAAGGTGCGACGGTGGTGGTGGTGTAAAGAAAACACAACCCTCCATATAGCTGTGCAATTCGGACACGAAAATGTCGCGGCTGAGATTTATAGCAGATCCAGGTCACTTCTCAAACAGCAAAACTTAGATGGAGATACACCTCTACATGTGGCTGCAAGGTTTGGTCACTTCTCTATTGTCAACTATCTGGTTAGAGATATAATTTCATCAGTGTCAGAGGTAGACATGGGCCTTGAGACCCTGAGAATTAGAAATAGGGGGAACAGCACAGTATTACACGAAGCTTCAAGGAATGGTCACTATAAAGTGGTCGAGTTCTTAATCAAAGTTGATCCCAACTTGGCTTCTGTTGAAAATGATGAGGGTGAGTCTCCATTGTATCTGGCCGCAAGAGGCGGAATGTTAGAGATTGTGAATCAAATTATAAGGACAAATCCGTCATCAGCTCATGGTGGTTCATTTGGCCAAACAGCTTTGCATGCTGCTGTGGTTGAAAGGCATGTTGGTATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

193

Amino Acids

21.2

Weight (kDa)

6.5

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	31 - 87	1.8e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	36 - 135	5.6e-15	Ankyrin repeats (3 copies)
Ank	PF00023	65 - 87	2.3e-06	Ankyrin repeat
Ank_2	PF12796	114 - 190	1.8e-11	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AasI	GACNNNNNNGTC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	143
AciI	CCGC	4 cut(s)	27, 143, 453, 462
AclWI	GGATC	3 cut(s)	37, 156, 392
AcoI	YGGCCR	2 cut(s)	450, 529
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	354, 419, 560
AjnI	CCWGG	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	1 cut(s)	552
AluBI	AGCT	4 cut(s)	116, 350, 512, 539
AluI	AGCT	4 cut(s)	116, 350, 512, 539
Alw26I	GTCTC	2 cut(s)	296, 441
AlwI	GGATC	3 cut(s)	37, 156, 392
AoxI	GGCC	3 cut(s)	295, 450, 529
ApeKI	GCWGC	2 cut(s)	218, 548
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	68, 443
BalI	TGGCCA	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	205, 535
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	296, 441
BisI	GCNGC	4 cut(s)	144, 219, 453, 549
BlsI	GCNGC	4 cut(s)	145, 220, 454, 550
Bme1390I	CCNGG	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	296
BsaXI	ACNNNNNCTCC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	138, 299
BseXI	GCAGC	2 cut(s)	205, 535
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	297, 452, 531
BslFI	GGGAC	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	296, 441
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	297, 452, 531
Bso31I	GGTCTC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	29, 161, 397
BspACI	CCGC	4 cut(s)	27, 143, 453, 462
BspANI	GGCC	3 cut(s)	297, 452, 531
BspCNI	CTCAG	2 cut(s)	139, 300
BspFNI	CGCG	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	578
BspPI	GGATC	3 cut(s)	37, 156, 392
BspTNI	GGTCTC	1 cut(s)	296
BssMI	GATC	3 cut(s)	29, 161, 397
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	19, 78, 337
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	147, 190, 308
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	3 cut(s)	32, 164, 400
BstMAI	GTCTC	2 cut(s)	296, 441
BstMBI	GATC	3 cut(s)	29, 161, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	3 cut(s)	215, 548, 569
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	205, 535
BstX2I	RGATCY	2 cut(s)	29, 161
BstYI	RGATCY	2 cut(s)	29, 161
BsuRI	GGCC	3 cut(s)	297, 452, 531
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	546
CciI	TCATGA	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	295
CviAII	CATG	6 cut(s)	212, 292, 515, 545, 566, 579
DdeI	CTNAG	3 cut(s)	147, 190, 308
DpnI	GATC	3 cut(s)	31, 163, 399
DpnII	GATC	3 cut(s)	29, 161, 397
DrdI	GACNNNNNNGTC	1 cut(s)	502
DseDI	GACNNNNNNGTC	1 cut(s)	502
EaeI	YGGCCR	2 cut(s)	450, 529
EciI	GGCGGA	2 cut(s)	42, 477
Eco31I	GGTCTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	6 cut(s)	215, 295, 518, 548, 569, 582
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	6 cut(s)	211, 291, 514, 544, 565, 578
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	144, 219, 453, 549
Fsp4HI	GCNGC	4 cut(s)	144, 219, 453, 549
GluI	GCNGC	4 cut(s)	144, 219, 453, 549
HaeIII	GGCC	3 cut(s)	297, 452, 531
Hin1II	CATG	6 cut(s)	215, 295, 518, 548, 569, 582
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	2 cut(s)	434, 481
HphI	GGTGA	2 cut(s)	68, 443
Hpy166II	GTNNAC	2 cut(s)	247, 289
Hpy188I	TCNGA	2 cut(s)	128, 283
Hpy188III	TCNNGA	1 cut(s)	579
Hpy8I	GTNNAC	2 cut(s)	247, 289
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	41, 61
HpyCH4III	ACNGT	3 cut(s)	19, 78, 337
HpyCH4V	TGCA	3 cut(s)	121, 221, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	3 cut(s)	147, 190, 308
Hsp92II	CATG	6 cut(s)	215, 295, 518, 548, 569, 582
Kzo9I	GATC	3 cut(s)	29, 161, 397
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	151, 178, 239, 320, 434
Lsp1109I	GCAGC	2 cut(s)	205, 535
MaeIII	GTNAC	3 cut(s)	168, 230, 362
MalI	GATC	3 cut(s)	31, 163, 399
MboI	GATC	3 cut(s)	29, 161, 397
MflI	RGATCY	2 cut(s)	29, 161
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	4 cut(s)	122, 267, 312, 486
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	7 cut(s)	5, 37, 116, 216, 277, 421, 452
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	3 cut(s)	29, 161, 397
NlaIII	CATG	6 cut(s)	215, 295, 518, 548, 569, 582
NmuCI	GTSAC	3 cut(s)	168, 230, 362
NspI	RCATGY	3 cut(s)	215, 548, 569
PaeI	GCATGC	1 cut(s)	548
PagI	TCATGA	1 cut(s)	578
PciI	ACATGT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	145, 220, 454, 550
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	29, 161
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	4 cut(s)	144, 219, 453, 549
Sau3AI	GATC	3 cut(s)	29, 161, 397
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	548
Sse9I	AATT	4 cut(s)	122, 267, 312, 486
SsiI	CCGC	4 cut(s)	27, 143, 453, 462
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	3 cut(s)	19, 78, 337
TaqI	TCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	122, 267, 312, 486
TauI	GCSGC	2 cut(s)	146, 455
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	3 cut(s)	168, 230, 362
TseI	GCWGC	2 cut(s)	218, 548
Tsp45I	GTSAC	3 cut(s)	168, 230, 362
TspDTI	ATGAA	2 cut(s)	261, 513
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	282
XceI	RCATGY	3 cut(s)	215, 548, 569
XmiI	GTMKAC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.