Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

32038102 .. 32038641

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAGCTCTGCTAGCATTCAAGCAAGAACTAGTCAAAGAAGCTGATCGACAAGGCCGGACTCCTCTCTACTATGCAGCATCCCTAGGTGACCACAGAACAGTTCAGCGATTACTAGAACTTGATACTTCTACTGCATATGTCTTGGATAAAGATGGTCGTTCACCAATTCATGTTGCAGCTAGGAATGGTCATACTGGTGTGATTAGAGAGATTATCCAACATTGCCCAGATTCCGGAGAACTTATTGACCCTTATGGACAGAATGCTCTTCATATTGCTATTTCCAGTGGACAAGCTAATGTTGTCACATATATATTAGAAACACCAGAACTAGAAGGGTTGATAAATCAGTCTGATATTGATGGAAACACGCCTTCGCATCTAGCAGCGATTGCAAGAAAAACTTGGATTCTTTGGTACTTGATGTGGGATGGAAGAGTAAATGAAAGATCCAAGAACAAATATGGCCAAACAGCATTTGACAATGATAGGTCAATGAAGAAATCTAGTATTACATCTCCCATGGTGAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

179

Amino Acids

19.97

Weight (kDa)

6.05

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_4	PF13637	23 - 69	2.4e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	30 - 108	5.2e-14	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	236
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	469
AfaI	GTAC	2 cut(s)	422, 535
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	31
AluBI	AGCT	4 cut(s)	8, 44, 182, 299
AluI	AGCT	4 cut(s)	8, 44, 182, 299
AlwI	GGATC	1 cut(s)	447
Aor13HI	TCCGGA	1 cut(s)	236
AoxI	GGCC	2 cut(s)	55, 469
ApeKI	GCWGC	3 cut(s)	77, 179, 389
AspA2I	CCTAGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	101, 156
AsuNHI	GCTAGC	1 cut(s)	13
AvrII	CCTAGG	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	89, 191, 401
BccI	CCATC	3 cut(s)	149, 359, 428
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	8 cut(s)	14, 32, 86, 116, 183, 335, 386, 510
BisI	GCNGC	3 cut(s)	78, 180, 390
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	3 cut(s)	79, 181, 391
BmcAI	AGTACT	1 cut(s)	535
BmsI	GCATC	2 cut(s)	89, 391
BmtI	GCTAGC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	85, 525
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	202, 288
Bse3DI	GCAATG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	85, 525
BseGI	GGATG	2 cut(s)	80, 439
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	202, 288
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	89, 191, 401
BshFI	GGCC	2 cut(s)	57, 471
BsiSI	CCGG	2 cut(s)	58, 237
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmI	GAATGC	2 cut(s)	17, 271
BsnI	GGCC	2 cut(s)	57, 471
Bsp13I	TCCGGA	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	46, 452
Bsp19I	CCATGG	1 cut(s)	525
BspANI	GGCC	2 cut(s)	57, 471
BspEI	TCCGGA	1 cut(s)	236
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	202, 288
BssECI	CCNNGG	2 cut(s)	85, 525
BssMI	GATC	2 cut(s)	46, 452
BssT1I	CCWWGG	2 cut(s)	85, 525
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	276, 433
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	525
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	80, 439
BstKTI	GATC	2 cut(s)	49, 455
BstMBI	GATC	2 cut(s)	46, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 395
BstPI	GGTNACC	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	89, 191, 401
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	57, 471
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	80, 439
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	421, 534
CviAII	CATG	2 cut(s)	173, 526
CviJI	RGCY	6 cut(s)	8, 44, 57, 182, 299, 471
CviKI_1	RGCY	6 cut(s)	8, 44, 57, 182, 299, 471
CviQI	GTAC	2 cut(s)	421, 534
DpnI	GATC	2 cut(s)	48, 454
DpnII	GATC	2 cut(s)	46, 452
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	276, 433
EarI	CTCTTC	2 cut(s)	276, 433
Eco130I	CCWWGG	2 cut(s)	85, 525
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EcoT14I	CCWWGG	2 cut(s)	85, 525
ErhI	CCWWGG	2 cut(s)	85, 525
FaeI	CATG	2 cut(s)	176, 529
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FatI	CATG	2 cut(s)	172, 525
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	78, 180, 390
FokI	GGATG	2 cut(s)	67, 446
Fsp4HI	GCNGC	3 cut(s)	78, 180, 390
FspBI	CTAG	8 cut(s)	14, 32, 86, 116, 183, 335, 386, 510
GluI	GCNGC	3 cut(s)	78, 180, 390
HaeIII	GGCC	2 cut(s)	57, 471
HapII	CCGG	2 cut(s)	58, 237
Hin1II	CATG	2 cut(s)	176, 529
HinfI	GANTC	3 cut(s)	61, 233, 412
HpaII	CCGG	2 cut(s)	58, 237
HphI	GGTGA	2 cut(s)	101, 156
Hpy166II	GTNNAC	2 cut(s)	164, 293
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	2 cut(s)	164, 293
HpyAV	CCTTC	2 cut(s)	332, 387
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	77, 137, 179, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 395
Hsp92II	CATG	2 cut(s)	176, 529
Kpn2I	TCCGGA	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	46, 452
LguI	GCTCTTC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	71, 183, 243, 250, 301, 342
Lsp1109I	GCAGC	3 cut(s)	89, 191, 401
LweI	GCATC	2 cut(s)	89, 391
MaeI	CTAG	8 cut(s)	14, 32, 86, 116, 183, 335, 386, 510
MaeIII	GTNAC	2 cut(s)	89, 307
MalI	GATC	2 cut(s)	48, 454
MboI	GATC	2 cut(s)	46, 452
MboII	GAAGA	3 cut(s)	263, 450, 514
MflI	RGATCY	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	1 cut(s)	538
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	471
MspI	CCGG	2 cut(s)	58, 237
Mva1269I	GAATGC	2 cut(s)	17, 271
MwoI	GCNNNNNNNGC	2 cut(s)	14, 395
NcoI	CCATGG	1 cut(s)	525
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	46, 452
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	176, 529
NmuCI	GTSAC	2 cut(s)	89, 307
PciSI	GCTCTTC	1 cut(s)	276
PctI	GAATGC	2 cut(s)	17, 271
PfeI	GAWTC	2 cut(s)	233, 412
PkrI	GCNGC	3 cut(s)	79, 181, 391
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	2 cut(s)	422, 535
RsaNI	GTAC	2 cut(s)	421, 534
RseI	CAYNNNNRTG	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	538
SatI	GCNGC	3 cut(s)	78, 180, 390
Sau3AI	GATC	2 cut(s)	46, 452
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	1 cut(s)	55
SetI	ASST	6 cut(s)	10, 46, 91, 184, 301, 497
SfaNI	GCATC	2 cut(s)	89, 391
SmiMI	CAYNNNNRTG	1 cut(s)	198
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	8 cut(s)	14, 32, 86, 116, 183, 335, 386, 510
StyI	CCWWGG	2 cut(s)	85, 525
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	233, 412
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	89, 307
TseI	GCWGC	3 cut(s)	77, 179, 389
Tsp45I	GTSAC	2 cut(s)	89, 307
TspDTI	ATGAA	4 cut(s)	161, 263, 462, 515
TspRI	CASTG	1 cut(s)	295
XmaJI	CCTAGG	1 cut(s)	85
XspI	CTAG	8 cut(s)	14, 32, 86, 116, 183, 335, 386, 510
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.