Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Forward (+)

62111216 .. 62112560

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAAGCTCTGCTAGCATTCAAGCAAGAACTAGTCAAAGAAGCTGATCGACAAGGCCGGACTCCTCTCTACTATGCAGCATCCCTAGGTGAACACAGAACAGTTCAGCGATTACTAGAACTTGATACTTCTACTGCATATGTTTTGGATAAAGATGGTCGTTCACCAATTCATGTTGCAGCTAGGAATGGTCATACCGGTGTGATTAGAGAGATTATCCAACATTGCCCAGATTCGGGAGAACTTATTGACCCTTATGGACAGAATGCTCTTCATATTGCTATTTCCAGTGGACAAGCTAATGTTGTCACATATATATTAGAAACACCAGAACTAGAAGGGTTGATAAATCAGTCTGATATTAATGGAAACACGCCTTTGCATCTAGCCGCGATTGCAAGAAAAACTTGGATTCTTTGGTACTTGATGTGGGATGGAAGAGTAAATCAAAGATCCAAGGACAAATATGGCCAAACAGCATTTGACAATGATAGGTCAATGAAGAAATCTAGTATTACATCTCCCATGATTTCAGCAAGAGCGGACCACGAAGAAGCAATTTCAGCGATGCAAACTTACAAGAAAATGGGTCAGACCCTTTTAACGGTTACAACACTCATTACAACTGTAACATTTACAGCCGCATTCACAATGCCTGGAGGCTACAACAATGATGCAGGCTCATCAGATCGAGGGCTAGCTCTTCTACAGTCGAGCAAATATCTAAAACATTTCATAATCTTCGACGCTGTTGCTATGACTTGCTCAATTAGTGCAGCTTGCCTCCTATTTTGGGGAGCTGTTAAAAGCAAGGGGTGCTATCTTTACTATTTCATAAGTGCCGCTGCTCTTACATATATTGCTCTACTATCGACTGCAGGAGCATTCACAACAGGAATTAAAGCTGTGCTGCCCCATCAGCAATACGTGGACATCATGATACTGGGAGTGGATGTTGCTTTTCACATCAGTACCTTCTTGTTTCTTTTTCATTTGGTTAAAATGTTTGCCATCCCTGAAGCCTGTAGACTCTTGTTTTCTCATCTCTGTATCAAGTCCAAAAGGGCTAAGATACAAAAATGGAGAAGAAGTACATATTTGAAGTTTTGGTTGGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

373

Amino Acids

41.55

Weight (kDa)

9.06

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_4	PF13637	23 - 69	3.6e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	48 - 108	1.2e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	81 - 130	2.4e-06	Ankyrin repeats (many copies)
PGG	PF13962	192 - 301	5.6e-24	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	392
AciI	CCGC	4 cut(s)	390, 542, 642, 843
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	1038
AfaI	GTAC	3 cut(s)	422, 973, 1093
AfiI	CCNNNNNNNGG	4 cut(s)	235, 236, 604, 793
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	22, 1102
AhlI	ACTAGT	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	655
AjuI	GAANNNNNNNTTGG	1 cut(s)	1094
AluBI	AGCT	8 cut(s)	8, 44, 182, 299, 701, 779, 800, 905
AluI	AGCT	8 cut(s)	8, 44, 182, 299, 701, 779, 800, 905
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	3 cut(s)	55, 469, 1113
ApeKI	GCWGC	5 cut(s)	77, 179, 776, 845, 910
AseI	ATTAAT	1 cut(s)	363
AsiGI	ACCGGT	1 cut(s)	197
AspA2I	CCTAGG	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	101, 156
AsuNHI	GCTAGC	2 cut(s)	13, 697
AvaII	GGWCC	1 cut(s)	544
AvrII	CCTAGG	1 cut(s)	85
BaeI	ACNNNNGTAYC	2 cut(s)	955, 988
BalI	TGGCCA	1 cut(s)	471
BbvI	GCAGC	5 cut(s)	89, 191, 788, 832, 897
BccI	CCATC	4 cut(s)	149, 428, 924, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	1 cut(s)	657
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	9 cut(s)	14, 32, 86, 116, 183, 335, 386, 510, 698
BfmI	CTRYAG	3 cut(s)	707, 876, 1024
BisI	GCNGC	8 cut(s)	78, 180, 390, 642, 777, 843, 846, 911
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	8 cut(s)	79, 181, 391, 643, 778, 844, 847, 912
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	657
BmrI	ACTGGG	1 cut(s)	953
BmsI	GCATC	4 cut(s)	89, 391, 558, 664
BmtI	GCTAGC	2 cut(s)	17, 701
BmuI	ACTGGG	1 cut(s)	953
BpmI	CTGGAG	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	928
BsaJI	CCNNGG	2 cut(s)	85, 456
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	4 cut(s)	939, 969, 1075, 1105
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 236, 604, 793
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	288, 948
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	2 cut(s)	85, 456
BseGI	GGATG	4 cut(s)	80, 439, 958, 1011
BseLI	CCNNNNNNNGG	4 cut(s)	235, 236, 604, 793
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	288, 948
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	5 cut(s)	89, 191, 788, 832, 897
BsgI	GTGCAG	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	57, 471, 1115
BshTI	ACCGGT	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	58, 198
BslI	CCNNNNNNNGG	4 cut(s)	235, 236, 604, 793
BsmI	GAATGC	4 cut(s)	17, 271, 644, 884
BsnI	GGCC	3 cut(s)	57, 471, 1115
Bsp143I	GATC	3 cut(s)	46, 452, 688
BspACI	CCGC	4 cut(s)	390, 542, 642, 843
BspANI	GGCC	3 cut(s)	57, 471, 1115
BspFNI	CGCG	1 cut(s)	392
BspHI	TCATGA	2 cut(s)	936, 1118
BspMAI	CTGCAG	1 cut(s)	880
BspOI	GCTAGC	2 cut(s)	17, 701
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	2 cut(s)	276, 708
BsrBI	CCGCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	288, 948
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	85, 456
BssMI	GATC	3 cut(s)	46, 452, 688
BssT1I	CCWWGG	2 cut(s)	85, 456
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	4 cut(s)	103, 607, 628, 711
Bst6I	CTCTTC	3 cut(s)	276, 433, 708
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstBAI	YACGTR	1 cut(s)	928
BstC8I	GCNNGC	4 cut(s)	15, 679, 699, 781
BstDEI	CTNAG	1 cut(s)	1068
BstF5I	GGATG	4 cut(s)	80, 439, 958, 1011
BstFNI	CGCG	1 cut(s)	392
BstKTI	GATC	3 cut(s)	49, 455, 691
BstMBI	GATC	3 cut(s)	46, 452, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 395, 563, 816, 919
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	3 cut(s)	707, 876, 1024
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	5 cut(s)	89, 191, 788, 832, 897
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	57, 471, 1115
BtgZI	GCGATG	1 cut(s)	581
BtsCI	GGATG	4 cut(s)	80, 439, 958, 1011
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	4 cut(s)	15, 679, 699, 781
CciI	TCATGA	2 cut(s)	936, 1118
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	3 cut(s)	421, 972, 1092
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	4 cut(s)	173, 526, 937, 1119
CviQI	GTAC	3 cut(s)	421, 972, 1092
DdeI	CTNAG	1 cut(s)	1068
DpnI	GATC	3 cut(s)	48, 454, 690
DpnII	GATC	3 cut(s)	46, 452, 688
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	3 cut(s)	276, 433, 708
EarI	CTCTTC	3 cut(s)	276, 433, 708
Eco130I	CCWWGG	2 cut(s)	85, 456
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	85, 456
ErhI	CCWWGG	2 cut(s)	85, 456
FaeI	CATG	4 cut(s)	176, 529, 940, 1122
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FatI	CATG	4 cut(s)	172, 525, 936, 1118
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	8 cut(s)	78, 180, 390, 642, 777, 843, 846, 911
FokI	GGATG	4 cut(s)	67, 446, 965, 998
Fsp4HI	GCNGC	8 cut(s)	78, 180, 390, 642, 777, 843, 846, 911
FspBI	CTAG	9 cut(s)	14, 32, 86, 116, 183, 335, 386, 510, 698
GluI	GCNGC	8 cut(s)	78, 180, 390, 642, 777, 843, 846, 911
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	3 cut(s)	57, 471, 1115
HapII	CCGG	2 cut(s)	58, 198
HgaI	GACGC	1 cut(s)	755
Hin1II	CATG	4 cut(s)	176, 529, 940, 1122
HinfI	GANTC	4 cut(s)	61, 233, 412, 1029
HpaII	CCGG	2 cut(s)	58, 198
HphI	GGTGA	2 cut(s)	101, 156
Hpy166II	GTNNAC	5 cut(s)	92, 164, 293, 931, 1028
Hpy188I	TCNGA	3 cut(s)	358, 594, 688
Hpy188III	TCNNGA	3 cut(s)	237, 937, 1119
Hpy8I	GTNNAC	5 cut(s)	92, 164, 293, 931, 1028
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	2 cut(s)	332, 985
HpyCH4III	ACNGT	4 cut(s)	103, 607, 628, 711
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	9 cut(s)	77, 137, 179, 382, 398, 571, 677, 776, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 395, 563, 816, 919
HpyF3I	CTNAG	1 cut(s)	1068
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	4 cut(s)	176, 529, 940, 1122
Kzo9I	GATC	3 cut(s)	46, 452, 688
LguI	GCTCTTC	2 cut(s)	276, 708
LmnI	GCTCC	2 cut(s)	797, 881
Lsp1109I	GCAGC	5 cut(s)	89, 191, 788, 832, 897
LweI	GCATC	4 cut(s)	89, 391, 558, 664
MaeI	CTAG	9 cut(s)	14, 32, 86, 116, 183, 335, 386, 510, 698
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	3 cut(s)	307, 607, 628
MalI	GATC	3 cut(s)	48, 454, 690
MbiI	CCGCTC	1 cut(s)	542
MboI	GATC	3 cut(s)	46, 452, 688
MboII	GAAGA	7 cut(s)	263, 450, 514, 563, 695, 733, 1098
MflI	RGATCY	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	4 cut(s)	168, 558, 768, 897
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	55, 1023
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	75, 653, 686, 794
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	5 cut(s)	363, 602, 804, 900, 999
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	2 cut(s)	58, 198
MspR9I	CCNGG	1 cut(s)	657
Mva1269I	GAATGC	4 cut(s)	17, 271, 644, 884
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	14, 395, 563, 816, 919
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	46, 452, 688
NheI	GCTAGC	2 cut(s)	13, 697
NlaIII	CATG	4 cut(s)	176, 529, 940, 1122
NmuCI	GTSAC	1 cut(s)	307
PagI	TCATGA	2 cut(s)	936, 1118
PciSI	GCTCTTC	2 cut(s)	276, 708
PctI	GAATGC	4 cut(s)	17, 271, 644, 884
PfeI	GAWTC	2 cut(s)	233, 412
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	8 cut(s)	79, 181, 391, 643, 778, 844, 847, 912
PleI	GAGTC	2 cut(s)	55, 1023
PpsI	GAGTC	2 cut(s)	55, 1023
Ppu21I	YACGTR	1 cut(s)	928
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspPI	GGNCC	1 cut(s)	544
PstI	CTGCAG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	3 cut(s)	422, 973, 1093
RsaNI	GTAC	3 cut(s)	421, 972, 1092
RseI	CAYNNNNRTG	1 cut(s)	198
SapI	GCTCTTC	2 cut(s)	276, 708
SaqAI	TTAA	5 cut(s)	363, 602, 804, 900, 999
SatI	GCNGC	8 cut(s)	78, 180, 390, 642, 777, 843, 846, 911
Sau3AI	GATC	3 cut(s)	46, 452, 688
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	2 cut(s)	55, 1023
ScrFI	CCNGG	1 cut(s)	657
SfaNI	GCATC	4 cut(s)	89, 391, 558, 664
SfcI	CTRYAG	3 cut(s)	707, 876, 1024
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	198
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	4 cut(s)	168, 558, 768, 897
SsiI	CCGC	4 cut(s)	390, 542, 642, 843
SspMI	CTAG	9 cut(s)	14, 32, 86, 116, 183, 335, 386, 510, 698
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	2 cut(s)	85, 456
TaaI	ACNGT	4 cut(s)	103, 607, 628, 711
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	5 cut(s)	49, 691, 713, 744, 872
TasI	AATT	4 cut(s)	168, 558, 768, 897
TatI	WGTACW	1 cut(s)	1091
TauI	GCSGC	3 cut(s)	392, 644, 845
TfiI	GAWTC	2 cut(s)	233, 412
Tru1I	TTAA	5 cut(s)	363, 602, 804, 900, 999
Tru9I	TTAA	5 cut(s)	363, 602, 804, 900, 999
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	5 cut(s)	77, 179, 776, 845, 910
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	6 cut(s)	161, 263, 515, 724, 823, 980
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	544
VspI	ATTAAT	1 cut(s)	363
XmaJI	CCTAGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	1027
XspI	CTAG	9 cut(s)	14, 32, 86, 116, 183, 335, 386, 510, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.