Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006558.1

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

28053 .. 28643

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006558.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggatccaaggctctacaaatctgcaaaatcaggggctgtttgcttcctcagaaaacttcttagtgataatcctagccttctatataaacttacacctcgagaaaacacaaccctccatatagctgtgcaattcggacacgaaaatgtcgcggctgagatttatagcagatccaggtcacttctcaaacagcaaaacttagatggagatacacctctacatgtggctgcaaggtttggtcacttctctattgtcaactatctggttagagatgtaatttcatcagtgtcagaggtagacatggggcttgagaccctgagaattagaaatagggggaacagcacagtattacacgaagcttcaaggaatggtcactataaagtggtcgagttcttaatcaaagttgatcccaacttggcttctgttgaaaatgatgagggtgagtctccattgtatctggccgcaagaggcggaatgttagagattgtgaatcaaattataaggacaaatccgtcatcagctcatggtggttcatttggccaaacagctttgcatgctgctgtggttgaaaggcatattggtatatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

196

Amino Acids

21.6

Weight (kDa)

7.95

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AasI	GACNNNNNNGTC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	152, 462, 471
AclWI	GGATC	3 cut(s)	12, 165, 401
AcoI	YGGCCR	2 cut(s)	459, 538
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	363, 428, 569
AjnI	CCWGG	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	1 cut(s)	561
AluBI	AGCT	4 cut(s)	125, 359, 521, 548
AluI	AGCT	4 cut(s)	125, 359, 521, 548
Alw26I	GTCTC	2 cut(s)	305, 450
AlwI	GGATC	3 cut(s)	12, 165, 401
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	459, 538
ApeKI	GCWGC	2 cut(s)	227, 557
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	214, 544
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	305, 450
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	4 cut(s)	153, 228, 462, 558
BlsI	GCNGC	4 cut(s)	154, 229, 463, 559
Bme1390I	CCNGG	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	8
BseMII	CTCAG	3 cut(s)	64, 147, 308
BseXI	GCAGC	2 cut(s)	214, 544
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	461, 540
BsiHKCI	CYCGRG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	305, 450
BsnI	GGCC	2 cut(s)	461, 540
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	4, 170, 406
BspACI	CCGC	3 cut(s)	152, 462, 471
BspANI	GGCC	2 cut(s)	461, 540
BspCNI	CTCAG	3 cut(s)	63, 148, 309
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 165, 401
BspTNI	GGTCTC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	4, 170, 406
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	5 cut(s)	50, 62, 156, 199, 317
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	3 cut(s)	7, 173, 409
BstMAI	GTCTC	2 cut(s)	305, 450
BstMBI	GATC	3 cut(s)	4, 170, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	175
BstNSI	RCATGY	2 cut(s)	224, 557
BstSCI	CCNGG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	214, 544
BstX2I	RGATCY	2 cut(s)	4, 170
BstYI	RGATCY	2 cut(s)	4, 170
BsuRI	GGCC	2 cut(s)	461, 540
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	555
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	587
CviAII	CATG	5 cut(s)	221, 301, 524, 554, 588
DdeI	CTNAG	5 cut(s)	50, 62, 156, 199, 317
DpnI	GATC	3 cut(s)	6, 172, 408
DpnII	GATC	3 cut(s)	4, 170, 406
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	459, 538
EciI	GGCGGA	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	5 cut(s)	224, 304, 527, 557, 591
FatI	CATG	5 cut(s)	220, 300, 523, 553, 587
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	153, 228, 462, 558
Fsp4HI	GCNGC	4 cut(s)	153, 228, 462, 558
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	4 cut(s)	153, 228, 462, 558
HaeIII	GGCC	2 cut(s)	461, 540
Hin1II	CATG	5 cut(s)	224, 304, 527, 557, 591
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	2 cut(s)	443, 490
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	256, 298
Hpy188I	TCNGA	3 cut(s)	53, 137, 292
Hpy188III	TCNNGA	2 cut(s)	101, 588
Hpy8I	GTNNAC	2 cut(s)	256, 298
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	26, 130, 230, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	5 cut(s)	50, 62, 156, 199, 317
Hsp92II	CATG	5 cut(s)	224, 304, 527, 557, 591
Kzo9I	GATC	3 cut(s)	4, 170, 406
LpnPI	CCDG	6 cut(s)	18, 160, 187, 248, 329, 443
Lsp1109I	GCAGC	2 cut(s)	214, 544
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	177, 239, 371
MalI	GATC	3 cut(s)	6, 172, 408
MboI	GATC	3 cut(s)	4, 170, 406
MflI	RGATCY	2 cut(s)	4, 170
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	4 cut(s)	131, 276, 321, 495
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	59, 108, 125, 225, 286, 430, 461
Mox20I	TGGCCA	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	554
NdeII	GATC	3 cut(s)	4, 170, 406
NlaIII	CATG	5 cut(s)	224, 304, 527, 557, 591
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	177, 239, 371
NspI	RCATGY	2 cut(s)	224, 557
PaeI	GCATGC	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	99
PagI	TCATGA	1 cut(s)	587
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	154, 229, 463, 559
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PscI	ACATGT	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	4, 170
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	4 cut(s)	153, 228, 462, 558
Sau3AI	GATC	3 cut(s)	4, 170, 406
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	9 cut(s)	100, 127, 179, 217, 236, 297, 361, 523, 550
Sfr274I	CTCGAG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	99, 308
SmoI	CTYRAG	2 cut(s)	99, 308
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	131, 276, 321, 495
SsiI	CCGC	3 cut(s)	152, 462, 471
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	100, 387
TasI	AATT	4 cut(s)	131, 276, 321, 495
TauI	GCSGC	2 cut(s)	155, 464
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	3 cut(s)	177, 239, 371
TseI	GCWGC	2 cut(s)	227, 557
Tsp45I	GTSAC	3 cut(s)	177, 239, 371
TspDTI	ATGAA	2 cut(s)	270, 522
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	291
XceI	RCATGY	2 cut(s)	224, 557
XhoI	CTCGAG	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.