RLG00000023471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002418
Physical Location & Seq
Forward (+)
24336044 .. 24336406
363 bp
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UTR
Exon/CDS
Intron
RLM00000023471

Sequence Viewer

Length: 363 bp
ATGGCCGATGCAGTGTTAAGTGTTTTATTAGAGCATTTGCCGGCGTCCGTGCGTTCGCTGATCAAGAACTCATTTGATACCTTGGCATTCCGTGTTGATCCTGAATATGTAATAGTATGGTTGCTGGATAGACTTGCTTTGCTGGTGATTGAACCATCACAGACACTACTCCGGCGAAACTTGCACGAGTATGAGCAAATAACTGATCCTTTCCAAAAGTTGTACAGGGCTGCAAGTTTGGGCGATAAAGATGAATTTTTGGCAACCCTGCCCGCAACAAACGATGAAATTCATCCAGCTCATCTCTCAACTGAGTCCCCTCAAGAACACATTTCTTCACATAGCAGTGAGCTATGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.64

Weight (kDa)

4.92

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 92, 200
AcoI YGGCCR 2 cut(s) 3, 356
AcsI RAATTY 2 cut(s) 254, 288
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 2 cut(s) 299, 352
AluI AGCT 2 cut(s) 299, 352
AlwI GGATC 2 cut(s) 92, 200
AoxI GGCC 2 cut(s) 3, 356
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 254, 288
AsuHPI GGTGA 1 cut(s) 157
BalI TGGCCA 1 cut(s) 358
BauI CACGAG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 163
BclI TGATCA 1 cut(s) 60
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 5, 358
BsiSI CCGG 2 cut(s) 41, 172
BslFI GGGAC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 5, 358
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 3 cut(s) 60, 97, 205
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 5, 358
BspCNI CTCAG 1 cut(s) 304
BspPI GGATC 2 cut(s) 92, 200
BsrFI RCCGGY 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 60, 97, 205
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 42, 273
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 3 cut(s) 63, 100, 208
BstMBI GATC 3 cut(s) 60, 97, 205
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 5, 358
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 2 cut(s) 18, 352
BtsIMutI CAGTG 2 cut(s) 18, 352
Cac8I GCNNGC 2 cut(s) 42, 273
Cfr10I RCCGGY 1 cut(s) 40
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 360
CviJI RGCY 5 cut(s) 5, 230, 299, 352, 358
CviKI_1 RGCY 5 cut(s) 5, 230, 299, 352, 358
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 62, 99, 207
DpnII GATC 3 cut(s) 60, 97, 205
EaeI YGGCCR 2 cut(s) 3, 356
Eco130I CCWWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 363
FaiI YATR 6 cut(s) 108, 118, 192, 342, 355, 361
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 359
FauI CCCGC 1 cut(s) 280
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 5, 358
HapII CCGG 2 cut(s) 41, 172
HgaI GACGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 363
HinfI GANTC 1 cut(s) 314
HpaII CCGG 2 cut(s) 41, 172
HphI GGTGA 1 cut(s) 157
Hpy188III TCNNGA 3 cut(s) 64, 101, 323
HpyCH4V TGCA 3 cut(s) 11, 184, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 363
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 60, 97, 205
LpnPI CCDG 8 cut(s) 54, 110, 114, 128, 185, 211, 281, 309
Lsp1109I GCAGC 1 cut(s) 217
MalI GATC 3 cut(s) 62, 99, 207
MboI GATC 3 cut(s) 60, 97, 205
MboII GAAGA 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 2 cut(s) 254, 288
MluNI TGGCCA 1 cut(s) 358
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 358
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 358
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 2 cut(s) 189, 345
Msp20I TGGCCA 1 cut(s) 358
MspI CCGG 2 cut(s) 41, 172
Mva1269I GAATGC 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 181
NaeI GCCGGC 1 cut(s) 42
NdeII GATC 3 cut(s) 60, 97, 205
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 363
PctI GAATGC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 189, 345
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 60, 97, 205
SchI GAGTC 1 cut(s) 323
SetI ASST 3 cut(s) 83, 301, 354
SmiMI CAYNNNNRTG 2 cut(s) 189, 345
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 2 cut(s) 254, 288
SsiI CCGC 1 cut(s) 273
StyI CCWWGG 1 cut(s) 81
TasI AATT 2 cut(s) 254, 288
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 18, 352
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 267, 281, 300
TspGWI ACGGA 2 cut(s) 37, 80
TspRI CASTG 2 cut(s) 18, 352
XapI RAATTY 2 cut(s) 254, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.