Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002418

Physical Location & Seq

Genomic Coordinates Reverse (-)

12680921 .. 12683028

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGGATCCAAGGCTCTACAGATATGCAAAGTCAGGGGACATTTGCTTCCTCAAACAACTTCTTAATGATAATCCCAGCCTACTATATCAACTTACACCTCGCAAAAACACAGCCCTCCATATCGCCGTGCAATTTGGAGACTCAAATGTTGTGGCCGAGATTTATAGCAGATGCAGGTCCCTTCTCACACAGCAAAACTTAGATGGAGATACTCCTTTACATGTGGCTGCAAGGGTTGGTTGCTTCTCTATCTTCAATGATCTGGTCAGAGAAATTTTATCCATGTCACAGGAAGACTTCAGGAATGAAAAAGATGGCATGGGGAAAAACACAGTTTTACATGAAGCTGTGAGGAATGGTCACATTAAATTGGTTCAGTTCTTGCTTACAATGGACCCTAAATTAGCGTCTATTGAAAATGATGCGGGAGAGTCTCCAAAGTACCTGGCTGCAAGAGGAGGAATGTTTGAGATTCTGAATCAGATTTTAAAATCAACTGCATCATCAGCTCATGGCGGGTCAGATGGCAGAACAGCCTTGCATGCAGCTGTGGTTGAGAAGCATTTTGACATCGTGGAAGCACTCCTACGATTCAAACAGCAGCTGATCAAAGAAACTGGTCACCAAGGCAGAACTCCTCTCTTCTATGCAGCATCCCTTGGCCAACATAGAACAGTTAAACGATTACTAGAACTTGATACTTCTATTGCATATGTTTTGGACAAAGAGGGCCATTCACCGATTCATGTTGCAGCCAGCAAAGGTCATTCCTCTGTGATTAGAGAGATCATTCGACATTGCCCAGACTCGGGAGAAATTTGTGACCTATATGGACAGAATGCTCTTCATTTGGCGATCATTGGTGGCAGAGCACATGTGGTCAGGTATATACTAGAAACACCAGAACTGGAGTGCCTCATAAATCAGCCTGATGTCATTGGAAACATGCCTTTGCATCTCGCAACCATAGAAAGAAAGACTTGGATGATGTATTACTTGATGTGGGATGGAAGAGTAAATCAAAATTCCATGAACAAATGTGGCCAAGCAGCATTTGACATTGATAGGTCAATTAAGGAATCCAGTATTGCATCTCCCAGGAAATTGCAGAACATTATCCCAGACATTTGGGGACATCTTGGTACCCGAGATTCATATTTGGACAACATCAAGATTTCCCCAAGAGCAGAACAAGAAGAAGCCAATGCAGTGCAAACTTACATGCAAATGGGTCGGACCCTTTTGATGGTTACAACTCTTATCACAACTGTGACATTTGCAGCTGCCTTCACAATGCCTGGAGGCTACAACAATGATGTAGGACCAGACCGAGGGCAGGCTCTTCTGCAGTCAAATAATGATTTCAAGTGGTTCATCATCACAGACAGCATTGCCATGACTTGCTCAATAATTGCATCTTGCCTTCTGTTCTGGGGAGCTGTGAACAGCAACAAGTCCTCTTATGTTTTCTATTTCACAAGTGCTGCTGCTCTTACACATATTGCTCTGCAATCCACTAAAATAGCATTCGAAACAGGGATTAAGGCTGTCATGCCCAATCAGCAATTTGTCAAAACCTTGGGAAACTTGGTTGGAGCCGCTTCTCATGTTATTACCTTCATGTTTCTTTCCCAACTGGTGAAAATGTTTTCCCTACCTGAAGCCTGCAGATTCTTCATTTCTCATCTCTGTAAGCTCAGGTGCAAATGTAAGAACAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

575

Amino Acids

64.01

Weight (kDa)

8.56

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03495
malus_domestica	MD11G1226900.v1.1
prunus_persica	Prupe.4G202700_v2.0.a1 Prupe.4G202800_v2.0.a1 Prupe.4G202900_v2.0.a1 Prupe.4G203100_v2.0.a1 Prupe.4G203300_v2.0.a1 Prupe.4G203400_v2.0.a1 Prupe.4G203500_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203600_v2.0.a1 Prupe.4G203800_v2.0.a1 Prupe.4G204100_v2.0.a1
pyrus_communis	pycom11g19940
rosa_chinensis	RchiOBHm_Chr4g0410171 RchiOBHm_Chr5g0037621
rosa_laevigata	RLG00000008451 RLG00000023471 RLG00000033790 RLG00000033795
rosa_multiflora	Rmu_sc0000365.1_g000031 Rmu_sc0002521.1_g000047 Rmu_sc0006558.1_g000005 Rmu_sc0006558.1_g000006
rosa_roxburghii	Rroxscaffold_1G00043350 Rroxscaffold_1G00043410 Rroxscaffold_1G00043420 Rroxscaffold_1G00043530 Rroxscaffold_5G00354960
rosa_rugosa	Rorug05G0165700 Rorug05G0165900
rosa_samantha	Rh4CG171100 Rh4CG171200 Rh5AG255200 Rh5BG256700 Rh5BG257000 Rh5DG265200 Rh5DG265300 Rh5DG265400 Rh5DG266000
rosa_wichuraiana	Rw5G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
Acc65I	GGTACC	1 cut(s)	1142
AccB1I	GGYRCC	1 cut(s)	1142
AciI	CCGC	3 cut(s)	425, 516, 1599
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	3 cut(s)	153, 661, 1042
AcsI	RAATTY	3 cut(s)	273, 816, 1024
AcuI	CTGAAG	2 cut(s)	283, 1680
AfaI	GTAC	2 cut(s)	443, 1144
AfiI	CCNNNNNNNGG	5 cut(s)	808, 809, 1246, 1331, 1336
AflIII	ACRYGT	2 cut(s)	220, 874
AgsI	TTSAA	4 cut(s)	256, 416, 595, 1366
AjnI	CCWGG	3 cut(s)	444, 1097, 1297
AleI	CACNNNNGTG	1 cut(s)	1268
AluBI	AGCT	7 cut(s)	347, 509, 548, 604, 1283, 1439, 1696
AluI	AGCT	7 cut(s)	347, 509, 548, 604, 1283, 1439, 1696
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	2 cut(s)	132, 438
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	604
Ama87I	CYCGRG	2 cut(s)	808, 1146
AoxI	GGCC	4 cut(s)	153, 661, 730, 1042
ApoI	RAATTY	3 cut(s)	273, 816, 1024
Asp718I	GGTACC	1 cut(s)	1142
AspS9I	GGNCC	5 cut(s)	177, 394, 730, 1236, 1322
AsuHPI	GGTGA	3 cut(s)	614, 729, 1651
AsuII	TTCGAA	1 cut(s)	1530
AvaI	CYCGRG	2 cut(s)	808, 1146
AvaII	GGWCC	4 cut(s)	177, 394, 1236, 1322
BalI	TGGCCA	2 cut(s)	663, 1044
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	1142
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	874
BccI	CCATC	5 cut(s)	197, 308, 518, 1001, 1240
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	1214, 1248
BciT130I	CCWGG	3 cut(s)	446, 1099, 1299
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	132, 438
BfaI	CTAG	2 cut(s)	689, 893
BfmI	CTRYAG	3 cut(s)	16, 1346, 1666
BfuAI	ACCTGC	1 cut(s)	165
Bme1390I	CCNGG	3 cut(s)	446, 1099, 1299
Bme18I	GGWCC	4 cut(s)	177, 394, 1236, 1322
BmeT110I	CYCGRG	2 cut(s)	808, 1146
BmgT120I	GGNCC	5 cut(s)	177, 394, 730, 1236, 1322
BmiI	GGNNCC	6 cut(s)	6, 179, 396, 1144, 1238, 1597
BmrFI	CCNGG	3 cut(s)	446, 1099, 1299
BmsI	GCATC	7 cut(s)	161, 412, 509, 662, 964, 1100, 1424
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	2 cut(s)	929, 1320
Bpu10I	CCTNAGC	1 cut(s)	1697
Bpu14I	TTCGAA	1 cut(s)	1530
BsaJI	CCNNGG	6 cut(s)	8, 625, 658, 1097, 1330, 1578
Bsc4I	CCNNNNNNNGG	5 cut(s)	808, 809, 1246, 1331, 1336
Bse1I	ACTGG	4 cut(s)	622, 912, 1083, 1641
Bse3DI	GCAATG	2 cut(s)	796, 1389
BseBI	CCWGG	3 cut(s)	446, 1099, 1299
BseDI	CCNNGG	6 cut(s)	8, 625, 658, 1097, 1330, 1578
BseGI	GGATG	3 cut(s)	653, 990, 1012
BseLI	CCNNNNNNNGG	5 cut(s)	808, 809, 1246, 1331, 1336
BseMI	GCAATG	2 cut(s)	796, 1389
BseMII	CTCAG	1 cut(s)	1711
BseNI	ACTGG	4 cut(s)	622, 912, 1083, 1641
BseRI	GAGGAG	2 cut(s)	471, 627
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	4 cut(s)	155, 663, 732, 1044
BshNI	GGYRCC	1 cut(s)	1142
BsiHKAI	GWGCWC	1 cut(s)	874
BsiHKCI	CYCGRG	2 cut(s)	808, 1146
BslFI	GGGAC	3 cut(s)	50, 163, 1146
BslI	CCNNNNNNNGG	5 cut(s)	808, 809, 1246, 1331, 1336
BsmAI	GTCTC	2 cut(s)	132, 438
BsmFI	GGGAC	3 cut(s)	50, 163, 1146
BsmI	GAATGC	2 cut(s)	844, 1526
BsnI	GGCC	4 cut(s)	155, 663, 732, 1044
BsoBI	CYCGRG	2 cut(s)	808, 1146
Bsp119I	TTCGAA	1 cut(s)	1530
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	5 cut(s)	4, 259, 606, 786, 855
BspACI	CCGC	3 cut(s)	425, 516, 1599
BspANI	GGCC	4 cut(s)	155, 663, 732, 1044
BspCNI	CTCAG	1 cut(s)	1710
BspLI	GGNNCC	6 cut(s)	6, 179, 396, 1144, 1238, 1597
BspMAI	CTGCAG	2 cut(s)	1350, 1670
BspMI	ACCTGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	2 cut(s)	849, 1347
BspT104I	TTCGAA	1 cut(s)	1530
BspT107I	GGYRCC	1 cut(s)	1142
BsrDI	GCAATG	2 cut(s)	796, 1389
BsrI	ACTGG	4 cut(s)	622, 912, 1083, 1641
BssECI	CCNNGG	6 cut(s)	8, 625, 658, 1097, 1330, 1578
BssMI	GATC	5 cut(s)	4, 259, 606, 786, 855
BssT1I	CCWWGG	4 cut(s)	8, 625, 658, 1578
Bst2UI	CCWGG	3 cut(s)	446, 1099, 1299
Bst4CI	ACNGT	3 cut(s)	334, 676, 1270
Bst6I	CTCTTC	4 cut(s)	647, 849, 1006, 1347
BstBI	TTCGAA	1 cut(s)	1530
BstC8I	GCNNGC	4 cut(s)	543, 757, 1338, 1666
BstDEI	CTNAG	2 cut(s)	199, 1697
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	3 cut(s)	653, 990, 1012
BstKTI	GATC	5 cut(s)	7, 262, 609, 789, 858
BstMAI	GTCTC	2 cut(s)	132, 438
BstMBI	GATC	5 cut(s)	4, 259, 606, 786, 855
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 542, 1561
BstNI	CCWGG	3 cut(s)	446, 1099, 1299
BstNSI	RCATGY	5 cut(s)	224, 545, 878, 949, 1225
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	444, 1097, 1297
BstSFI	CTRYAG	3 cut(s)	16, 1346, 1666
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	1128
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	155, 663, 732, 1044
BtsCI	GGATG	3 cut(s)	653, 990, 1012
BtsI	GCAGTG	1 cut(s)	1215
BtsIMutI	CAGTG	1 cut(s)	1215
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	4 cut(s)	543, 757, 1338, 1666
CaiI	CAGNNNCTG	1 cut(s)	604
Cfr13I	GGNCC	5 cut(s)	177, 394, 730, 1236, 1322
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	442, 1143
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviQI	GTAC	2 cut(s)	442, 1143
DdeI	CTNAG	2 cut(s)	199, 1697
DpnI	GATC	5 cut(s)	6, 261, 608, 788, 857
DpnII	GATC	5 cut(s)	4, 259, 606, 786, 855
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	3 cut(s)	153, 661, 1042
Eam1104I	CTCTTC	4 cut(s)	647, 849, 1006, 1347
EarI	CTCTTC	4 cut(s)	647, 849, 1006, 1347
Eco130I	CCWWGG	4 cut(s)	8, 625, 658, 1578
Eco47I	GGWCC	4 cut(s)	177, 394, 1236, 1322
Eco57I	CTGAAG	2 cut(s)	283, 1680
Eco88I	CYCGRG	2 cut(s)	808, 1146
Eco91I	GGTNACC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	444, 1097, 1297
EcoT14I	CCWWGG	4 cut(s)	8, 625, 658, 1578
ErhI	CCWWGG	4 cut(s)	8, 625, 658, 1578
FalI	AAGNNNNNCTT	2 cut(s)	964, 996
FaqI	GGGAC	3 cut(s)	50, 163, 1146
FauI	CCCGC	2 cut(s)	418, 509
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	606
FokI	GGATG	3 cut(s)	640, 997, 1019
FspBI	CTAG	2 cut(s)	689, 893
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	929, 1320
HaeIII	GGCC	4 cut(s)	155, 663, 732, 1044
HgaI	GACGC	1 cut(s)	396
HphI	GGTGA	3 cut(s)	614, 729, 1651
Hpy166II	GTNNAC	1 cut(s)	1444
Hpy188I	TCNGA	5 cut(s)	269, 477, 483, 523, 1236
Hpy188III	TCNNGA	3 cut(s)	301, 810, 1171
Hpy8I	GTNNAC	1 cut(s)	1444
HpyAV	CCTTC	4 cut(s)	191, 1297, 1433, 1627
HpyCH4III	ACNGT	3 cut(s)	334, 676, 1270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 542, 1561
HpyF3I	CTNAG	2 cut(s)	199, 1697
KpnI	GGTACC	1 cut(s)	1146
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	4, 259, 606, 786, 855
LguI	GCTCTTC	2 cut(s)	849, 1347
LmnI	GCTCC	2 cut(s)	1436, 1595
LweI	GCATC	7 cut(s)	161, 412, 509, 662, 964, 1100, 1424
MaeI	CTAG	2 cut(s)	689, 893
MaeIII	GTNAC	6 cut(s)	285, 359, 620, 821, 1249, 1270
MalI	GATC	5 cut(s)	6, 261, 608, 788, 857
MboI	GATC	5 cut(s)	4, 259, 606, 786, 855
MboII	GAAGA	8 cut(s)	244, 305, 634, 836, 1023, 1208, 1334, 1666
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	874
MlsI	TGGCCA	2 cut(s)	663, 1044
MluNI	TGGCCA	2 cut(s)	663, 1044
MlyI	GAGTC	3 cut(s)	134, 440, 800
MmeI	TCCRAC	2 cut(s)	1214, 1573
Mox20I	TGGCCA	2 cut(s)	663, 1044
MscI	TGGCCA	2 cut(s)	663, 1044
MseI	TTAA	6 cut(s)	63, 366, 488, 678, 1074, 1542
MslI	CAYNNNNRTG	3 cut(s)	1226, 1268, 1394
Msp20I	TGGCCA	2 cut(s)	663, 1044
MspA1I	CMGCKG	3 cut(s)	548, 604, 1283
MspR9I	CCNGG	3 cut(s)	446, 1099, 1299
Mva1269I	GAATGC	2 cut(s)	844, 1526
MvaI	CCWGG	3 cut(s)	446, 1099, 1299
MwoI	GCNNNNNNNGC	3 cut(s)	506, 542, 1561
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	5 cut(s)	4, 259, 606, 786, 855
NlaIV	GGNNCC	6 cut(s)	6, 179, 396, 1144, 1238, 1597
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	5 cut(s)	285, 359, 620, 821, 1270
NspI	RCATGY	5 cut(s)	224, 545, 878, 949, 1225
NspV	TTCGAA	1 cut(s)	1530
OliI	CACNNNNGTG	1 cut(s)	1268
PaeI	GCATGC	1 cut(s)	545
PciI	ACATGT	2 cut(s)	220, 874
PciSI	GCTCTTC	2 cut(s)	849, 1347
PctI	GAATGC	2 cut(s)	844, 1526
PfeI	GAWTC	7 cut(s)	472, 478, 591, 742, 1079, 1151, 1671
PleI	GAGTC	3 cut(s)	134, 439, 800
PpsI	GAGTC	3 cut(s)	134, 439, 800
PpuMI	RGGWCCY	1 cut(s)	177
PscI	ACATGT	2 cut(s)	220, 874
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	444, 1097, 1297
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	3 cut(s)	444, 1097, 1297
PspN4I	GGNNCC	6 cut(s)	6, 179, 396, 1144, 1238, 1597
PspPI	GGNCC	5 cut(s)	177, 394, 730, 1236, 1322
PspPPI	RGGWCCY	1 cut(s)	177
PstI	CTGCAG	2 cut(s)	1350, 1670
PstNI	CAGNNNCTG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	3 cut(s)	548, 604, 1283
RsaI	GTAC	2 cut(s)	443, 1144
RsaNI	GTAC	2 cut(s)	442, 1143
RseI	CAYNNNNRTG	3 cut(s)	1226, 1268, 1394
SapI	GCTCTTC	2 cut(s)	849, 1347
SaqAI	TTAA	6 cut(s)	63, 366, 488, 678, 1074, 1542
Sau3AI	GATC	5 cut(s)	4, 259, 606, 786, 855
Sau96I	GGNCC	5 cut(s)	177, 394, 730, 1236, 1322
SchI	GAGTC	3 cut(s)	134, 440, 800
ScrFI	CCNGG	3 cut(s)	446, 1099, 1299
SduI	GDGCHC	1 cut(s)	874
SfaNI	GCATC	7 cut(s)	161, 412, 509, 662, 964, 1100, 1424
SfcI	CTRYAG	3 cut(s)	16, 1346, 1666
SfuI	TTCGAA	1 cut(s)	1530
SinI	GGWCC	4 cut(s)	177, 394, 1236, 1322
SmiMI	CAYNNNNRTG	3 cut(s)	1226, 1268, 1394
SphI	GCATGC	1 cut(s)	545
SsiI	CCGC	3 cut(s)	425, 516, 1599
SspMI	CTAG	2 cut(s)	689, 893
StyD4I	CCNGG	3 cut(s)	444, 1097, 1297
StyI	CCWWGG	4 cut(s)	8, 625, 658, 1578
TaaI	ACNGT	3 cut(s)	334, 676, 1270
TaqI	TCGA	2 cut(s)	793, 1530
TaqII	GACCGA	1 cut(s)	1344
TauI	GCSGC	1 cut(s)	1601
TfiI	GAWTC	7 cut(s)	472, 478, 591, 742, 1079, 1151, 1671
Tru1I	TTAA	6 cut(s)	63, 366, 488, 678, 1074, 1542
Tru9I	TTAA	6 cut(s)	63, 366, 488, 678, 1074, 1542
TscAI	CASTG	1 cut(s)	1215
TseFI	GTSAC	5 cut(s)	285, 359, 620, 821, 1270
Tsp45I	GTSAC	5 cut(s)	285, 359, 620, 821, 1270
TspDTI	ATGAA	9 cut(s)	321, 357, 734, 836, 1046, 1143, 1363, 1609, 1666
TspRI	CASTG	1 cut(s)	1215
VpaK11BI	GGWCC	4 cut(s)	177, 394, 1236, 1322
XapI	RAATTY	3 cut(s)	273, 816, 1024
XceI	RCATGY	5 cut(s)	224, 545, 878, 949, 1225
XspI	CTAG	2 cut(s)	689, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.