Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

5375714 .. 5376922

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08455.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAGGAGACACCACCACCGATGCCAAATCGGCTCCGATAGCGAAACCGGATCCGAATCCGATTCCGATACCGACACGCCGATGCGATGCATCTCTTGTCGAGAAGAGTACCTCCCTCGCAACGCCGGGACCTGCAAGGAATGCTACGTCGAAGCCGGCGAAACTGAAGAAGAACTCAAACGCGAGATCGATGACCTCAAAGCTAAAGTTGCTTTCCTTCGCTTATCTTCTTCTCTTGATCATGGAACTAGTTCAACCTCTAGATCCTTCACTGATGTTGTTCTCATCGCCTCTGAAGATAACGCCGGATCTCCTCCTATTCCCGCTCATAAATCCGTTCTGGTGAGTCGTTCTCCAGTTTTCAAAGCAATGCTTGAGAATGAAATGGAAGAGAGTCTAAGCGGCACGATCAAGATCAGCGACGTATCTTATGACGCTCTTCGGACTTTCGTATATTATCTCTATACAGCTGAAGCATGTCTTGATGAGCAAATGGCATGTGATCTTTTGGTCATGTCAGAGAAATACCAAGTGAAACATCTCAAGAGTTATTGTGAGAGGTTTTTGGTTACCAAACTCAGTCCGGATAACTCTCTCATGACCTATGCCTTTGCACACCAGCACAACGCGAAACATGTTCTCGATGCTGCGTTGTCGCAGATCGTAGAAAATATGGATAAACTTACTAAAAGAGAGGAATATATGGAGCTCGTGGAGAAGGATCCTCGTCTTATCGTTGAAATTTATGAAGCCTATCTCTCGAAACAGGTTAATACGGCAGCTGGAGGAACTAGTACGAGCAAAACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

270

Amino Acids

30.35

Weight (kDa)

5.19

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	86 - 192	2.7e-22	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	2 cut(s)	183, 629
AccIII	TCCGGA	1 cut(s)	583
AciI	CCGC	2 cut(s)	324, 402
AclWI	GGATC	6 cut(s)	45, 58, 258, 316, 716, 729
AcsI	RAATTY	1 cut(s)	741
AcuI	CTGAAG	3 cut(s)	186, 315, 492
AfaI	GTAC	2 cut(s)	110, 796
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	255, 364, 740
AhlI	ACTAGT	3 cut(s)	248, 791, 806
AluBI	AGCT	4 cut(s)	203, 470, 709, 782
AluI	AGCT	4 cut(s)	203, 470, 709, 782
Alw21I	GWGCWC	1 cut(s)	711
AlwI	GGATC	6 cut(s)	45, 58, 258, 316, 716, 729
Aor13HI	TCCGGA	1 cut(s)	583
ApeKI	GCWGC	2 cut(s)	647, 779
ApoI	RAATTY	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	129
BamHI	GGATCC	2 cut(s)	50, 721
BanII	GRGCYC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	634, 791
BceAI	ACGGC	1 cut(s)	792
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	127
BcuI	ACTAGT	3 cut(s)	248, 791, 806
BfaI	CTAG	4 cut(s)	249, 261, 792, 807
BfuAI	ACCTGC	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	403, 648, 780
BlsI	GCNGC	3 cut(s)	404, 649, 781
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	34, 52, 130, 723
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	5 cut(s)	11, 72, 77, 99, 634
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	2 cut(s)	339, 804
BpuEI	CTTGAG	2 cut(s)	395, 527
BpuMI	CCSGG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	2 cut(s)	55, 413
BsaWI	WCCGGW	2 cut(s)	47, 583
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	2 cut(s)	55, 413
BseAI	TCCGGA	1 cut(s)	583
BseCI	ATCGAT	1 cut(s)	189
BseJI	GATNNNNATC	2 cut(s)	55, 413
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	19, 303
BseXI	GCAGC	2 cut(s)	634, 791
Bsh1236I	CGCG	2 cut(s)	183, 629
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	5 cut(s)	48, 126, 156, 306, 584
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp13I	TCCGGA	1 cut(s)	583
BspACI	CCGC	2 cut(s)	324, 402
BspCNI	CTCAG	1 cut(s)	591
BspDI	ATCGAT	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	183, 629
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	4 cut(s)	34, 52, 130, 723
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	6 cut(s)	45, 58, 258, 316, 716, 729
BspQI	GCTCTTC	1 cut(s)	444
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	155
BssSI	CACGAG	1 cut(s)	710
Bst2BI	CACGAG	1 cut(s)	710
Bst6I	CTCTTC	3 cut(s)	99, 384, 444
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	398, 578
BstEII	GGTNACC	1 cut(s)	568
BstFNI	CGCG	2 cut(s)	183, 629
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 39, 141, 209
BstNSI	RCATGY	3 cut(s)	480, 501, 638
BstPI	GGTNACC	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	2 cut(s)	183, 629
BstV1I	GCAGC	2 cut(s)	634, 791
BstX2I	RGATCY	4 cut(s)	50, 263, 308, 721
BstYI	RGATCY	4 cut(s)	50, 263, 308, 721
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	2 cut(s)	100, 271
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	109, 795
CviAII	CATG	6 cut(s)	242, 477, 498, 514, 598, 635
CviJI	RGCY	7 cut(s)	33, 155, 203, 470, 709, 752, 782
CviKI_1	RGCY	7 cut(s)	33, 155, 203, 470, 709, 752, 782
CviQI	GTAC	2 cut(s)	109, 795
DdeI	CTNAG	2 cut(s)	398, 578
Eam1104I	CTCTTC	3 cut(s)	99, 384, 444
EarI	CTCTTC	3 cut(s)	99, 384, 444
Ecl136II	GAGCTC	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	3 cut(s)	186, 315, 492
Eco91I	GGTNACC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	709
EcoO109I	RGGNCCY	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	711
FaeI	CATG	6 cut(s)	245, 480, 501, 517, 601, 638
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 465, 497
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	6 cut(s)	241, 476, 497, 513, 597, 634
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	403, 648, 780
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	3 cut(s)	403, 648, 780
FspBI	CTAG	4 cut(s)	249, 261, 792, 807
GluI	GCNGC	3 cut(s)	403, 648, 780
GsuI	CTGGAG	2 cut(s)	339, 804
HapII	CCGG	5 cut(s)	48, 126, 156, 306, 584
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	6 cut(s)	245, 480, 501, 517, 601, 638
HinfI	GANTC	4 cut(s)	56, 62, 346, 394
HpaII	CCGG	5 cut(s)	48, 126, 156, 306, 584
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	7 cut(s)	37, 55, 61, 67, 295, 444, 520
Hpy99I	CGWCG	2 cut(s)	152, 425
HpyAV	CCTTC	3 cut(s)	227, 277, 712
HpyCH4IV	ACGT	2 cut(s)	147, 423
HpyCH4V	TGCA	3 cut(s)	90, 135, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 39, 141, 209
HpyF3I	CTNAG	2 cut(s)	398, 578
HpySE526I	ACGT	2 cut(s)	147, 423
Hsp92II	CATG	6 cut(s)	245, 480, 501, 517, 601, 638
Kpn2I	TCCGGA	1 cut(s)	583
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	38, 706
Lsp1109I	GCAGC	2 cut(s)	634, 791
LweI	GCATC	5 cut(s)	11, 72, 77, 99, 634
MaeI	CTAG	4 cut(s)	249, 261, 792, 807
MaeII	ACGT	2 cut(s)	147, 423
MaeIII	GTNAC	1 cut(s)	568
MbiI	CCGCTC	1 cut(s)	326
MboII	GAAGA	8 cut(s)	116, 179, 182, 219, 222, 308, 401, 431
MflI	RGATCY	4 cut(s)	50, 263, 308, 721
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	1 cut(s)	741
MlyI	GAGTC	2 cut(s)	355, 403
Mph1103I	ATGCAT	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	583
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	470, 782
MspI	CCGG	5 cut(s)	48, 126, 156, 306, 584
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	146
MvnI	CGCG	2 cut(s)	183, 629
MwoI	GCNNNNNNNGC	4 cut(s)	30, 39, 141, 209
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	127
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	6 cut(s)	245, 480, 501, 517, 601, 638
NlaIV	GGNNCC	4 cut(s)	34, 52, 130, 723
NsiI	ATGCAT	1 cut(s)	92
NspI	RCATGY	3 cut(s)	480, 501, 638
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	56, 62
PkrI	GCNGC	3 cut(s)	404, 649, 781
PleI	GAGTC	2 cut(s)	354, 402
PpsI	GAGTC	2 cut(s)	354, 402
PpuMI	RGGWCCY	1 cut(s)	129
PscI	ACATGT	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	568
PspN4I	GGNNCC	4 cut(s)	34, 52, 130, 723
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PsuI	RGATCY	4 cut(s)	50, 263, 308, 721
PvuII	CAGCTG	2 cut(s)	470, 782
RsaI	GTAC	2 cut(s)	110, 796
RsaNI	GTAC	2 cut(s)	109, 795
RseI	CAYNNNNRTG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	3 cut(s)	403, 648, 780
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	355, 403
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	5 cut(s)	11, 72, 77, 99, 634
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	374, 542
SmoI	CTYRAG	2 cut(s)	374, 542
SpeI	ACTAGT	3 cut(s)	248, 791, 806
Sse9I	AATT	1 cut(s)	741
SsiI	CCGC	2 cut(s)	324, 402
SspMI	CTAG	4 cut(s)	249, 261, 792, 807
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	125
TaiI	ACGT	2 cut(s)	150, 426
TaqI	TCGA	5 cut(s)	100, 150, 189, 642, 761
TasI	AATT	1 cut(s)	741
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	56, 62
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	647, 779
TspDTI	ATGAA	2 cut(s)	396, 762
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	741
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	3 cut(s)	480, 501, 638
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	4 cut(s)	249, 261, 792, 807
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.