Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Reverse (-)

58576321 .. 58577004

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACGACAAGACAGGCGGCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGCCTGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTCCACTCGCTCCCAACCCATCTCCTTCTCGGACGTCGTTTTGGTTGCCTCCCAGGATCCCTCCGCCGCAGGGCTCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGTCAGTACCCATTTCGCCTATTTCTTCATTCATCAGTCCCCTTTGTGGGTTGAGCTGTTTTCTTGGGTTTTTTGCACTCACATTGTGTTCCATCTTTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

5.68

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	17, 246, 249
AclWI	GGATC	2 cut(s)	233, 246
AcvI	CACGTG	2 cut(s)	77, 90
AcyI	GRCGYC	2 cut(s)	81, 216
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	4 cut(s)	252, 271, 336, 337
AjnI	CCWGG	2 cut(s)	57, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	2 cut(s)	133, 346
AluI	AGCT	2 cut(s)	133, 346
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	233, 246
AoxI	GGCC	4 cut(s)	111, 159, 273, 282
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	135, 258
BbrPI	CACGTG	2 cut(s)	77, 90
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	2 cut(s)	209, 390
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	59, 236
BcoDI	GTCTC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	18, 249
BlsI	GCNGC	2 cut(s)	19, 250
Bme1390I	CCNGG	2 cut(s)	59, 236
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	59, 236
BmsI	GCATC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	3 cut(s)	119, 140, 161
BsaAI	YACGTR	2 cut(s)	77, 90
BsaHI	GRCGYC	2 cut(s)	81, 216
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	123, 162, 234
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 271, 336, 337
Bse118I	RCCGGY	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	59, 236
BseDI	CCNNGG	3 cut(s)	123, 162, 234
BseLI	CCNNNNNNNGG	4 cut(s)	252, 271, 336, 337
BseRI	GAGGAG	3 cut(s)	122, 140, 143
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	4 cut(s)	113, 161, 275, 284
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	84, 272
BslFI	GGGAC	2 cut(s)	248, 313
BslI	CCNNNNNNNGG	4 cut(s)	252, 271, 336, 337
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	248, 313
BsnI	GGCC	4 cut(s)	113, 161, 275, 284
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	135, 258
Bsp143I	GATC	2 cut(s)	144, 238
BspACI	CCGC	3 cut(s)	17, 246, 249
BspANI	GGCC	4 cut(s)	113, 161, 275, 284
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	233, 246
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	123, 162, 234
BssMI	GATC	2 cut(s)	144, 238
BssNI	GRCGYC	2 cut(s)	81, 216
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	59, 236
BstACI	GRCGYC	2 cut(s)	81, 216
BstAPI	GCANNNNNTGC	2 cut(s)	54, 99
BstBAI	YACGTR	2 cut(s)	77, 90
BstC8I	GCNNGC	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	147, 241
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	144, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 80, 99, 167, 281
BstNI	CCWGG	2 cut(s)	59, 236
BstSCI	CCNGG	2 cut(s)	57, 234
BstUI	CGCG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	113, 161, 275, 284
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	2 cut(s)	80, 89
Csp6I	GTAC	1 cut(s)	297
CviJI	RGCY	7 cut(s)	113, 133, 161, 256, 275, 284, 346
CviKI_1	RGCY	7 cut(s)	113, 133, 161, 256, 275, 284, 346
CviQI	GTAC	1 cut(s)	297
DpnI	GATC	2 cut(s)	146, 240
DpnII	GATC	2 cut(s)	144, 238
DraIII	CACNNNGTG	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	235
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	135, 258
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	133
Eco72I	CACGTG	2 cut(s)	77, 90
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	57, 234
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	135, 258
ErhI	CCWWGG	1 cut(s)	162
FaiI	YATR	2 cut(s)	50, 279
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	2 cut(s)	248, 313
Fnu4HI	GCNGC	2 cut(s)	18, 249
FriOI	GRGCYC	2 cut(s)	135, 258
Fsp4HI	GCNGC	2 cut(s)	18, 249
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	18, 249
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	113, 161, 275, 284
HapII	CCGG	2 cut(s)	84, 272
HgaI	GACGC	2 cut(s)	80, 89
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	2 cut(s)	81, 216
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	84, 272
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	393
Hpy99I	CGWCG	3 cut(s)	74, 152, 221
HpyAV	CCTTC	2 cut(s)	181, 217
HpyCH4IV	ACGT	3 cut(s)	76, 89, 216
HpyCH4V	TGCA	3 cut(s)	48, 93, 366
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 80, 99, 167, 281
HpySE526I	ACGT	3 cut(s)	76, 89, 216
Hsp92I	GRCGYC	2 cut(s)	81, 216
HspAI	GCGC	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	144, 238
LmnI	GCTCC	2 cut(s)	130, 197
LpnPI	CCDG	7 cut(s)	44, 71, 97, 221, 237, 248, 285
LweI	GCATC	1 cut(s)	29
MaeII	ACGT	3 cut(s)	76, 89, 216
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	146, 240
MboI	GATC	2 cut(s)	144, 238
MboII	GAAGA	2 cut(s)	49, 307
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	135, 258
MnlI	CCTC	8 cut(s)	100, 103, 118, 121, 164, 185, 241, 253
MroNI	GCCGGC	1 cut(s)	83
MspI	CCGG	2 cut(s)	84, 272
MspR9I	CCNGG	2 cut(s)	59, 236
MvaI	CCWGG	2 cut(s)	59, 236
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	5 cut(s)	54, 80, 99, 167, 281
NaeI	GCCGGC	1 cut(s)	85
NdeII	GATC	2 cut(s)	144, 238
NgoMIV	GCCGGC	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	19, 250
PmaCI	CACGTG	2 cut(s)	77, 90
PmlI	CACGTG	2 cut(s)	77, 90
Ppu21I	YACGTR	2 cut(s)	77, 90
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	57, 234
PspCI	CACGTG	2 cut(s)	77, 90
PspGI	CCWGG	2 cut(s)	57, 234
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	135
SatI	GCNGC	2 cut(s)	18, 249
Sau3AI	GATC	2 cut(s)	144, 238
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	59, 236
SduI	GDGCHC	2 cut(s)	135, 258
SetI	ASST	7 cut(s)	79, 92, 135, 156, 168, 219, 348
SfaNI	GCATC	1 cut(s)	29
SfiI	GGCCNNNNNGGCC	1 cut(s)	281
SmlI	CTYRAG	3 cut(s)	134, 155, 176
SmoI	CTYRAG	3 cut(s)	134, 155, 176
SsiI	CCGC	3 cut(s)	17, 246, 249
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	57, 234
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	3 cut(s)	79, 92, 219
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	137
TauI	GCSGC	2 cut(s)	20, 251
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	56, 307, 311
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.