Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

11443635 .. 11444784

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACGACAAGACAGGCGGCATCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGCCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTCCACTCGCTCCCAACCCATCTCCTTCTCCGACGTCGTTTTGGTCGCCTCCCAGGATCCCTCCGCCGCAGGACCCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGTCGTTCTCCGGTATTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTATCCTATGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCCTAATATTGGCCGAAAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCACACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACCCGTGAGGAGTACATGGAGCTGGTGGAGAAAGATCCACGACTCGTGGTGGAAGTCTACGAGGCTTATCTCTCGAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTAGGTCCTGCAGTTAAGCCCCCTCCGAGATGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

264

Amino Acids

29.51

Weight (kDa)

5.1

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	69 - 176	1.5e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	696
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	17, 249, 252
AclWI	GGATC	3 cut(s)	236, 249, 668
AcoI	YGGCCR	1 cut(s)	468
AcvI	CACGTG	2 cut(s)	80, 93
AcyI	GRCGYC	2 cut(s)	84, 219
AfaI	GTAC	2 cut(s)	479, 653
AfiI	CCNNNNNNNGG	3 cut(s)	274, 439, 466
AhdI	GACNNNNNGTC	1 cut(s)	263
AjnI	CCWGG	3 cut(s)	60, 237, 480
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	7 cut(s)	136, 320, 422, 529, 555, 634, 661
AluI	AGCT	7 cut(s)	136, 320, 422, 529, 555, 634, 661
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	236, 249, 668
AoxI	GGCC	6 cut(s)	114, 162, 276, 285, 447, 468
ApeKI	GCWGC	3 cut(s)	487, 599, 731
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	3 cut(s)	257, 277, 761
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	257, 761
BamHI	GGATCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	138
BauI	CACGAG	2 cut(s)	683, 753
BbrPI	CACGTG	2 cut(s)	80, 93
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	499, 611, 743
BccI	CCATC	2 cut(s)	212, 331
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	3 cut(s)	62, 239, 482
BciVI	GTATCC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	729, 765
BfuI	GTATCC	1 cut(s)	388
BglI	GCCNNNNNGGC	3 cut(s)	284, 293, 354
BisI	GCNGC	5 cut(s)	18, 252, 488, 600, 732
BlsI	GCNGC	5 cut(s)	19, 253, 489, 601, 733
Bme1390I	CCNGG	3 cut(s)	62, 239, 482
Bme18I	GGWCC	2 cut(s)	257, 761
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	257, 277, 761
BmiI	GGNNCC	2 cut(s)	243, 259
BmrFI	CCNGG	3 cut(s)	62, 239, 482
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	5 cut(s)	29, 376, 499, 586, 776
BmuI	ACTGGG	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpuEI	CTTGAG	5 cut(s)	122, 143, 164, 347, 479
BsaAI	YACGTR	2 cut(s)	80, 93
BsaHI	GRCGYC	2 cut(s)	84, 219
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	126, 165, 237
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 439, 466
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	3 cut(s)	62, 239, 482
BseDI	CCNNGG	3 cut(s)	126, 165, 237
BseLI	CCNNNNNNNGG	3 cut(s)	274, 439, 466
BseMII	CTCAG	2 cut(s)	341, 414
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	4 cut(s)	125, 143, 146, 662
BseXI	GCAGC	3 cut(s)	499, 611, 743
BsgI	GTGCAG	2 cut(s)	506, 735
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	6 cut(s)	116, 164, 278, 287, 449, 470
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	87, 275, 308
BslFI	GGGAC	2 cut(s)	251, 551
BslI	CCNNNNNNNGG	3 cut(s)	274, 439, 466
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	251, 551
BsnI	GGCC	6 cut(s)	116, 164, 278, 287, 449, 470
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
BspACI	CCGC	3 cut(s)	17, 249, 252
BspANI	GGCC	6 cut(s)	116, 164, 278, 287, 449, 470
BspCNI	CTCAG	2 cut(s)	342, 415
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	243, 259
BspMAI	CTGCAG	2 cut(s)	733, 769
BspPI	GGATC	3 cut(s)	236, 249, 668
BspTNI	GGTCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	126, 165, 237
BssMI	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
BssNI	GRCGYC	2 cut(s)	84, 219
BssSI	CACGAG	2 cut(s)	683, 753
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	2 cut(s)	683, 753
Bst2UI	CCWGG	3 cut(s)	62, 239, 482
BstACI	GRCGYC	2 cut(s)	84, 219
BstAPI	GCANNNNNTGC	2 cut(s)	57, 102
BstBAI	YACGTR	2 cut(s)	80, 93
BstC8I	GCNNGC	2 cut(s)	88, 451
BstDEI	CTNAG	2 cut(s)	350, 423
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	6 cut(s)	150, 244, 369, 615, 676, 723
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
BstMWI	GCNNNNNNNGC	8 cut(s)	57, 83, 102, 170, 284, 293, 354, 395
BstNI	CCWGG	3 cut(s)	62, 239, 482
BstSCI	CCNGG	3 cut(s)	60, 237, 480
BstSFI	CTRYAG	2 cut(s)	729, 765
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	499, 611, 743
BstX2I	RGATCY	2 cut(s)	241, 673
BstYI	RGATCY	2 cut(s)	241, 673
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	6 cut(s)	116, 164, 278, 287, 449, 470
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	88, 451
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	257, 277, 761
CseI	GACGC	2 cut(s)	83, 92
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	478, 652
CviAII	CATG	2 cut(s)	625, 655
CviQI	GTAC	2 cut(s)	478, 652
DdeI	CTNAG	2 cut(s)	350, 423
DpnI	GATC	6 cut(s)	149, 243, 368, 614, 675, 722
DpnII	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
DriI	GACNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	257, 761
Eco53kI	GAGCTC	1 cut(s)	136
Eco72I	CACGTG	2 cut(s)	80, 93
EcoICRI	GAGCTC	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoO109I	RGGNCCY	2 cut(s)	257, 761
EcoRII	CCWGG	3 cut(s)	60, 237, 480
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	628, 658
FaiI	YATR	9 cut(s)	53, 282, 323, 384, 430, 588, 590, 626, 656
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	2 cut(s)	251, 551
FatI	CATG	2 cut(s)	624, 654
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	696
Fnu4HI	GCNGC	5 cut(s)	18, 252, 488, 600, 732
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	5 cut(s)	18, 252, 488, 600, 732
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	5 cut(s)	18, 252, 488, 600, 732
HaeIII	GGCC	6 cut(s)	116, 164, 278, 287, 449, 470
HapII	CCGG	3 cut(s)	87, 275, 308
HgaI	GACGC	2 cut(s)	83, 92
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	2 cut(s)	84, 219
Hin1II	CATG	2 cut(s)	628, 658
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	298, 331, 681, 743
HpaII	CCGG	3 cut(s)	87, 275, 308
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	406, 697
Hpy188I	TCNGA	4 cut(s)	217, 317, 336, 783
Hpy188III	TCNNGA	2 cut(s)	364, 712
Hpy8I	GTNNAC	2 cut(s)	406, 697
Hpy99I	CGWCG	4 cut(s)	77, 155, 221, 224
HpyAV	CCTTC	3 cut(s)	184, 220, 401
HpyCH4IV	ACGT	3 cut(s)	79, 92, 219
HpyCH4V	TGCA	8 cut(s)	51, 96, 487, 566, 599, 731, 752, 767
HpyF10VI	GCNNNNNNNGC	8 cut(s)	57, 83, 102, 170, 284, 293, 354, 395
HpyF3I	CTNAG	2 cut(s)	350, 423
HpySE526I	ACGT	3 cut(s)	79, 92, 219
Hsp92I	GRCGYC	2 cut(s)	84, 219
Hsp92II	CATG	2 cut(s)	628, 658
HspAI	GCGC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
LmnI	GCTCC	3 cut(s)	133, 200, 658
Lsp1109I	GCAGC	3 cut(s)	499, 611, 743
LweI	GCATC	5 cut(s)	29, 376, 499, 586, 776
MabI	ACCWGGT	1 cut(s)	480
MaeII	ACGT	3 cut(s)	79, 92, 219
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	6 cut(s)	149, 243, 368, 614, 675, 722
MboI	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
MboII	GAAGA	2 cut(s)	52, 738
MflI	RGATCY	2 cut(s)	241, 673
MhlI	GDGCHC	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	307, 675
MmeI	TCCRAC	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	87, 275, 308
MspR9I	CCNGG	3 cut(s)	62, 239, 482
MvaI	CCWGG	3 cut(s)	62, 239, 482
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	8 cut(s)	57, 83, 102, 170, 284, 293, 354, 395
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	628, 658
NlaIV	GGNNCC	2 cut(s)	243, 259
NmuCI	GTSAC	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	331, 743
PkrI	GCNGC	5 cut(s)	19, 253, 489, 601, 733
PleI	GAGTC	2 cut(s)	306, 675
PmaCI	CACGTG	2 cut(s)	80, 93
PmlI	CACGTG	2 cut(s)	80, 93
PpsI	GAGTC	2 cut(s)	306, 675
Ppu21I	YACGTR	2 cut(s)	80, 93
PpuMI	RGGWCCY	2 cut(s)	257, 761
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	2 cut(s)	257, 761
Psp6I	CCWGG	3 cut(s)	60, 237, 480
PspCI	CACGTG	2 cut(s)	80, 93
PspGI	CCWGG	3 cut(s)	60, 237, 480
PspN4I	GGNNCC	2 cut(s)	243, 259
PspPI	GGNCC	3 cut(s)	257, 277, 761
PspPPI	RGGWCCY	2 cut(s)	257, 761
PstI	CTGCAG	2 cut(s)	733, 769
PsuI	RGATCY	2 cut(s)	241, 673
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	479, 653
RsaNI	GTAC	2 cut(s)	478, 652
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	5 cut(s)	18, 252, 488, 600, 732
Sau3AI	GATC	6 cut(s)	147, 241, 366, 612, 673, 720
Sau96I	GGNCC	3 cut(s)	257, 277, 761
SchI	GAGTC	2 cut(s)	307, 675
ScrFI	CCNGG	3 cut(s)	62, 239, 482
SduI	GDGCHC	1 cut(s)	138
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	5 cut(s)	29, 376, 499, 586, 776
SfcI	CTRYAG	2 cut(s)	729, 765
SfiI	GGCCNNNNNGGCC	1 cut(s)	284
SinI	GGWCC	2 cut(s)	257, 761
SmlI	CTYRAG	5 cut(s)	137, 158, 179, 326, 494
SmoI	CTYRAG	5 cut(s)	137, 158, 179, 326, 494
SsiI	CCGC	3 cut(s)	17, 249, 252
SspI	AATATT	2 cut(s)	465, 549
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	60, 237, 480
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	3 cut(s)	82, 95, 222
TaqI	TCGA	3 cut(s)	150, 435, 713
TaqII	GACCGA	1 cut(s)	140
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	2 cut(s)	20, 254
TfiI	GAWTC	2 cut(s)	331, 743
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	487, 599, 731
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	257, 761
XagI	CCTNNNNNAGG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	696
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.