Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

9627447 .. 9627722

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1132700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTCTCGGATAAGTGTCAAACGGCGTGTCACCTCCTAGTACTGGCTGAAAAATACCAAGTGCAGCATCTCAAGGTCCATTGCGAGAAGTTCTTGGTGTCAAAACTGAACTGGGAAAATTCCGTTTTGAGCTACACCTTTGCGCACCAGCACAATGCGAAGCATATCATTGACTCCGCATTGACATTGATCACAGACAACATGGACAAGCTTACTACCCGGGAGGAGTACGTGGAGCTGGTGGAGAAAGATCCACGACTTGTAGTCGAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

92

Amino Acids

10.64

Weight (kDa)

6.03

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	2 cut(s)	42, 230
AfiI	CCNNNNNNNGG	1 cut(s)	43
AhdI	GACNNNNNGTC	1 cut(s)	263
AluBI	AGCT	3 cut(s)	132, 211, 238
AluI	AGCT	3 cut(s)	132, 211, 238
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	220, 221
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	2 cut(s)	220, 221
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	220, 221
Bme18I	GGWCC	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	220, 221
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	220, 221
BsaAI	YACGTR	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	48, 116
Bse3DI	GCAATG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	48, 116
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	189, 250
BspACI	CCGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	48, 116
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	189, 250
BstBAI	YACGTR	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	192, 253
BstMBI	GATC	2 cut(s)	189, 250
BstSCI	CCNGG	2 cut(s)	218, 219
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	76
Cfr9I	CCCGGG	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	41, 229
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	4 cut(s)	47, 132, 211, 238
CviKI_1	RGCY	4 cut(s)	47, 132, 211, 238
CviQI	GTAC	2 cut(s)	41, 229
DpnI	GATC	2 cut(s)	191, 252
DpnII	GATC	2 cut(s)	189, 250
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	219
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	165, 203
FatI	CATG	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	38
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	65
HapII	CCGG	1 cut(s)	220
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 250
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	5 cut(s)	29, 97, 161, 224, 233
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	191, 252
MboI	GATC	2 cut(s)	189, 250
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	44, 217
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	220, 221
NciI	CCSGG	2 cut(s)	220, 221
NdeII	GATC	2 cut(s)	189, 250
NlaIII	CATG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	29
NsbI	TGCGCA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	42, 230
RsaNI	GTAC	2 cut(s)	41, 229
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	189, 250
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	220, 221
SetI	ASST	7 cut(s)	36, 78, 134, 140, 213, 234, 240
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	218, 219
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	112
TspMI	CCCGGG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	219
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.