Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40630437 .. 40631824

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G487800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGGAGCTGCATATCTTGCCAGATCAAGGCCAAGGTCGAGCAGCGCAAGCGCAACGAGGACCTCAACGCCAAGCTCGCTTTTCTCACGATGCCCCAGCCGGCTTCCTTTTCCGACGTCGTTCTGTTTGCCAACGACGATGACGAGCACCCCGTACCCGTTCCGGCCCATAAGGCTGTTTTGGCGAACCGTTCTCCAGTGTTGAGAGCCATGCTTGATAATGAGATGAAAGAAAGCCTGAGTGGCACTATCAAGATTGGCGATGTCTCCTACGATGCCCTTCGCGCCTTCATCAACTACCTCTACACAGCTGAGTATGCCTCGACCAGCAATTGGCCTGTGCAACATCTCAAAGACTTCTGCCATAAGTTCTTGGTGTCCAACCTCAACTTGGACAATTCACTTTCGACCTACACCTTTGCGCGCCAGCATAACTTCAAGTCGATCATCGACGCAGCCTTGACGCTGATCACAGCCAACATGAACAAGCTTGCTTCCCGGGACGAGTACATAGAGCTGAAGGAGAGAGATCCGGGACTCTTATTAGAAATCTATGAAGCTTATTTTTCCAAATGGCCCAAATGGGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

198

Amino Acids

22.54

Weight (kDa)

6.52

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccII	CGCG	2 cut(s)	285, 424
AclWI	GGATC	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	156, 509
AfiI	CCNNNNNNNGG	3 cut(s)	28, 333, 391
AgsI	TTSAA	1 cut(s)	439
AluBI	AGCT	6 cut(s)	9, 76, 311, 490, 517, 560
AluI	AGCT	6 cut(s)	9, 76, 311, 490, 517, 560
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	4 cut(s)	30, 165, 335, 575
ApeKI	GCWGC	3 cut(s)	9, 43, 455
AspLEI	GCGC	5 cut(s)	48, 54, 287, 424, 426
AspS9I	GGNCC	3 cut(s)	61, 166, 576
AsuC2I	CCSGG	3 cut(s)	499, 500, 534
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	55, 467
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	3 cut(s)	499, 500, 534
BcoDI	GTCTC	1 cut(s)	271
BglI	GCCNNNNNGGC	2 cut(s)	173, 243
BisI	GCNGC	3 cut(s)	10, 44, 456
BlsI	GCNGC	3 cut(s)	11, 45, 457
Bme1390I	CCNGG	3 cut(s)	499, 500, 534
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	3 cut(s)	61, 166, 576
BmrFI	CCNGG	3 cut(s)	499, 500, 534
BmsI	GCATC	2 cut(s)	81, 265
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	180
BpuMI	CCSGG	3 cut(s)	499, 500, 534
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	33, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 333, 391
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	33, 498
BseLI	CCNNNNNNNGG	3 cut(s)	28, 333, 391
BseMII	CTCAG	2 cut(s)	230, 303
BseNI	ACTGG	1 cut(s)	197
BsePI	GCGCGC	1 cut(s)	422
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	55, 467
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	285, 424
BshFI	GGCC	4 cut(s)	32, 167, 337, 577
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	4 cut(s)	101, 164, 499, 533
BslFI	GGGAC	2 cut(s)	515, 549
BslI	CCNNNNNNNGG	3 cut(s)	28, 333, 391
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	515, 549
BsnI	GGCC	4 cut(s)	32, 167, 337, 577
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	24, 444, 468, 529
BspANI	GGCC	4 cut(s)	32, 167, 337, 577
BspCNI	CTCAG	2 cut(s)	231, 304
BspFNI	CGCG	2 cut(s)	285, 424
BspPI	GGATC	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	33, 498
BssHII	GCGCGC	1 cut(s)	422
BssMI	GATC	4 cut(s)	24, 444, 468, 529
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstC8I	GCNNGC	6 cut(s)	50, 78, 102, 424, 428, 492
BstDEI	CTNAG	2 cut(s)	239, 312
BstFNI	CGCG	2 cut(s)	285, 424
BstHHI	GCGC	5 cut(s)	48, 54, 287, 424, 426
BstKTI	GATC	4 cut(s)	27, 447, 471, 532
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	4 cut(s)	24, 444, 468, 529
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 49, 77, 173, 182, 243, 284, 317
BstSCI	CCNGG	3 cut(s)	497, 498, 532
BstUI	CGCG	2 cut(s)	285, 424
BstV1I	GCAGC	2 cut(s)	55, 467
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	32, 167, 337, 577
BtgZI	GCGATG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	6 cut(s)	50, 78, 102, 424, 428, 492
CfoI	GCGC	5 cut(s)	48, 54, 287, 424, 426
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	61, 166, 576
Cfr9I	CCCGGG	1 cut(s)	498
CseI	GACGC	2 cut(s)	461, 472
Csp6I	GTAC	2 cut(s)	155, 508
CviAII	CATG	2 cut(s)	211, 481
CviQI	GTAC	2 cut(s)	155, 508
DdeI	CTNAG	2 cut(s)	239, 312
DpnI	GATC	4 cut(s)	26, 446, 470, 531
DpnII	GATC	4 cut(s)	24, 444, 468, 529
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	539
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	214, 484
FaiI	YATR	9 cut(s)	14, 171, 212, 318, 366, 432, 482, 512, 555
FaqI	GGGAC	2 cut(s)	515, 549
FatI	CATG	2 cut(s)	210, 480
FbaI	TGATCA	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	10, 44, 456
Fsp4HI	GCNGC	3 cut(s)	10, 44, 456
GlaI	GCGC	5 cut(s)	47, 53, 286, 423, 425
GluI	GCNGC	3 cut(s)	10, 44, 456
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	32, 167, 337, 577
HapII	CCGG	4 cut(s)	101, 164, 499, 533
HgaI	GACGC	2 cut(s)	461, 472
HhaI	GCGC	5 cut(s)	48, 54, 287, 424, 426
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	214, 484
Hin6I	GCGC	5 cut(s)	46, 52, 285, 422, 424
HinP1I	GCGC	5 cut(s)	46, 52, 285, 422, 424
HindIII	AAGCTT	2 cut(s)	488, 558
HinfI	GANTC	1 cut(s)	537
HpaII	CCGG	4 cut(s)	101, 164, 499, 533
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	2 cut(s)	88, 253
Hpy99I	CGWCG	4 cut(s)	119, 122, 140, 455
HpyAV	CCTTC	3 cut(s)	290, 298, 514
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	12, 343
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 49, 77, 173, 182, 243, 284, 317
HpyF3I	CTNAG	2 cut(s)	239, 312
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	214, 484
HspAI	GCGC	5 cut(s)	46, 52, 285, 422, 424
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	24, 444, 468, 529
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	2 cut(s)	55, 467
LweI	GCATC	2 cut(s)	81, 265
MaeII	ACGT	1 cut(s)	117
MalI	GATC	4 cut(s)	26, 446, 470, 531
MboI	GATC	4 cut(s)	24, 444, 468, 529
MfeI	CAATTG	1 cut(s)	331
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	331, 397
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	2 cut(s)	138, 405
MnlI	CCTC	5 cut(s)	52, 74, 311, 331, 395
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	4 cut(s)	101, 164, 499, 533
MspR9I	CCNGG	3 cut(s)	499, 500, 534
MunI	CAATTG	1 cut(s)	331
MvnI	CGCG	2 cut(s)	285, 424
MwoI	GCNNNNNNNGC	8 cut(s)	18, 49, 77, 173, 182, 243, 284, 317
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	3 cut(s)	499, 500, 534
NdeII	GATC	4 cut(s)	24, 444, 468, 529
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	214, 484
PauI	GCGCGC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 150
PdiI	GCCGGC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	3 cut(s)	11, 45, 457
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	61, 166, 576
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	529
PteI	GCGCGC	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	156, 509
RsaNI	GTAC	2 cut(s)	155, 508
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	3 cut(s)	10, 44, 456
Sau3AI	GATC	4 cut(s)	24, 444, 468, 529
Sau96I	GGNCC	3 cut(s)	61, 166, 576
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	3 cut(s)	499, 500, 534
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	81, 265
SinI	GGWCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	500
Sse9I	AATT	2 cut(s)	331, 397
StyD4I	CCNGG	3 cut(s)	497, 498, 532
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	5 cut(s)	39, 323, 407, 443, 450
TasI	AATT	2 cut(s)	331, 397
TatI	WGTACW	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	3 cut(s)	9, 43, 455
TspDTI	ATGAA	4 cut(s)	242, 280, 497, 570
TspMI	CCCGGG	1 cut(s)	498
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmaI	CCCGGG	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.