Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

9629657 .. 9629917

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1132800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTTGAGAATGAAGAGATGGAAGAAAGTCGGAGTGGTACCGTTAAGATTGCCGATACGCGCTACGATGCCCTACAAGCTTTTGTCAACTACCTCTACACTGCTGAGACATGCCTTAACCAGAACTTGGCATGTGACCTCCTAATACTAGCTGAAAAATACCAAGTGCAGCATCTCAAGAACTATTGCCAGAAATTCTTGGTGTCCAAGCTCAACTGGGACAATGCCCTTACGACCTACGCCTTTGCCCACCCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

87

Amino Acids

9.97

Weight (kDa)

4.95

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	1 - 70	2.2e-11	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	80, 152, 211
AluI	AGCT	3 cut(s)	80, 152, 211
Alw26I	GTCTC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	194
Asp718I	GGTACC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	58, 181
BmuI	ACTGGG	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	26, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	114, 135
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
CfoI	GCGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	111, 132
CviJI	RGCY	3 cut(s)	80, 152, 211
CviKI_1	RGCY	3 cut(s)	80, 152, 211
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
FaeI	CATG	2 cut(s)	114, 135
FaiI	YATR	3 cut(s)	112, 133, 259
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	110, 131
Fnu4HI	GCNGC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	114, 135
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	114, 135
HspAI	GCGC	1 cut(s)	61
KpnI	GGTACC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	134, 202, 203
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	58, 181
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	26, 35
MluCI	AATT	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	2 cut(s)	104, 149
MseI	TTAA	2 cut(s)	45, 117
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	114, 135
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	2 cut(s)	114, 135
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	45, 117
SatI	GCNGC	1 cut(s)	170
SetI	ASST	6 cut(s)	82, 96, 141, 154, 213, 239
SfaNI	GCATC	2 cut(s)	58, 181
SmlI	CTYRAG	2 cut(s)	5, 176
SmoI	CTYRAG	2 cut(s)	5, 176
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	45, 117
Tru9I	TTAA	2 cut(s)	45, 117
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	2 cut(s)	114, 135
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.