Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40636061 .. 40637946

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G488000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAACATGAGGAGGTGCATATCTTGCAAGGGCGGATATGATGCCGGCACCTGCTGCAAGCAGTGCCACGAGGACCTTAAGGCCAAGGTCGCTTTTCTCACGATGTCCCAGCCGGCTTTCTTTTCCGACGTCCTTCTGTTTGCCTCCTCCGACGAGAACTCTGTACCCATTCCGGCCCATAAGGGCGTTTTGATGAATCGTTCTCCAGTGTTGAAGGCCATGCTTGAGAATGAGATGGAAGAAAGCCTGAGCAGCACCATCAAGATTGGCGATGTCTCCTACGACACCCTTCGTGCCTTCATCAACTATCTCTATACAGCTGAGGTATGCATTGACCAGCAATTGGCCTGTGATCTCCTAGTAATGGCTGAAAAATACCAGGTGCAGCATCTCAAAGACTTGTGCCAGAAGTTCTTGGTGGCCAACCTCAACTGGGACAATGCATTTATGATCTATACCTTTGCACACCACCATGATGCCAAGCAGATCATCGATGCAGCCTTGGCGTTGATCACAAACAAAATGGACAAGCTTTCTGCCCGGAAGGACTATGAGGAGCTCAAGGAGAGAGAACCACGACTTATATTCGAAATATATGAAGCTTATTTCTCCAAACAAGCTAACACTACAAAAAACATCATCAATAGTAGCGTTCCTTTTTTTGGAAACCCACAGGTTTGTCAGACGAGAGGAACTCAATGTAACGGAGAAAACACTTTTTGCTATTTCCGACCAATAACGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

249

Amino Acids

28.27

Weight (kDa)

6.08

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	59
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	343
AciI	CCGC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	4 cut(s)	343, 364, 433, 662
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	5 cut(s)	320, 532, 559, 602, 620
AluI	AGCT	5 cut(s)	320, 532, 559, 602, 620
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	280
AoxI	GGCC	5 cut(s)	81, 174, 216, 345, 420
ApeKI	GCWGC	4 cut(s)	54, 252, 385, 497
AspS9I	GGNCC	2 cut(s)	73, 175
AsuC2I	CCSGG	1 cut(s)	541
AsuII	TTCGAA	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	561
BauI	CACGAG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	561
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	41, 264, 397, 509
BccI	CCATC	2 cut(s)	229, 266
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	359
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	55, 253, 386, 498
BlsI	GCNGC	4 cut(s)	56, 254, 387, 499
Bme1390I	CCNGG	2 cut(s)	380, 541
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	73, 175
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	380, 541
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	4 cut(s)	31, 397, 466, 484
BmuI	ACTGGG	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	2 cut(s)	248, 321
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	2 cut(s)	245, 545
BpuMI	CCSGG	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	84, 501
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 364, 433, 662
Bse118I	RCCGGY	2 cut(s)	44, 112
Bse1I	ACTGG	2 cut(s)	206, 437
BseBI	CCWGG	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	84, 501
BseLI	CCNNNNNNNGG	4 cut(s)	343, 364, 433, 662
BseMII	CTCAG	2 cut(s)	239, 312
BseNI	ACTGG	2 cut(s)	206, 437
BseRI	GAGGAG	3 cut(s)	25, 136, 569
BseXI	GCAGC	4 cut(s)	41, 264, 397, 509
BseYI	CCCAGC	1 cut(s)	108
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	5 cut(s)	83, 176, 218, 347, 422
BshNI	GGYRCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	4 cut(s)	45, 113, 173, 541
BslFI	GGGAC	2 cut(s)	91, 449
BslI	CCNNNNNNNGG	4 cut(s)	343, 364, 433, 662
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	91, 449
BsnI	GGCC	5 cut(s)	83, 176, 218, 347, 422
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	352, 450, 486, 510
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	5 cut(s)	83, 176, 218, 347, 422
BspCNI	CTCAG	2 cut(s)	240, 313
BspDI	ATCGAT	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	44, 112
BsrI	ACTGG	2 cut(s)	206, 437
BssAI	RCCGGY	2 cut(s)	44, 112
BssECI	CCNNGG	2 cut(s)	84, 501
BssMI	GATC	4 cut(s)	352, 450, 486, 510
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	84, 501
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	77
BstAPI	GCANNNNNTGC	3 cut(s)	24, 54, 63
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	46, 59, 114
BstDEI	CTNAG	2 cut(s)	248, 321
BstKTI	GATC	4 cut(s)	355, 453, 489, 513
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	352, 450, 486, 510
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 54, 63, 89, 252, 503
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	378, 539
BstV1I	GCAGC	4 cut(s)	41, 264, 397, 509
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	5 cut(s)	83, 176, 218, 347, 422
BsuTUI	ATCGAT	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 213
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	3 cut(s)	46, 59, 114
Cfr10I	RCCGGY	2 cut(s)	44, 112
Cfr13I	GGNCC	2 cut(s)	73, 175
ClaI	ATCGAT	1 cut(s)	492
CsiI	ACCWGGT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	3 cut(s)	7, 220, 473
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	248, 321
DpnI	GATC	4 cut(s)	354, 452, 488, 512
DpnII	GATC	4 cut(s)	352, 450, 486, 510
EaeI	YGGCCR	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	2 cut(s)	84, 501
Eco24I	GRGCYC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	84, 501
EcoT22I	ATGCAT	2 cut(s)	332, 445
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	2 cut(s)	84, 501
FaeI	CATG	3 cut(s)	10, 223, 476
FaqI	GGGAC	2 cut(s)	91, 449
FatI	CATG	3 cut(s)	6, 219, 472
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	55, 253, 386, 498
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	4 cut(s)	55, 253, 386, 498
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	4 cut(s)	55, 253, 386, 498
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	83, 176, 218, 347, 422
HapII	CCGG	4 cut(s)	45, 113, 173, 541
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	10, 223, 476
HindIII	AAGCTT	2 cut(s)	530, 600
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	4 cut(s)	45, 113, 173, 541
Hpy188I	TCNGA	4 cut(s)	127, 151, 684, 731
Hpy188III	TCNNGA	2 cut(s)	100, 262
Hpy99I	CGWCG	2 cut(s)	131, 155
HpyAV	CCTTC	5 cut(s)	143, 208, 299, 307, 538
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	18, 27, 57, 330, 385, 443, 464, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 54, 63, 89, 252, 503
HpyF3I	CTNAG	2 cut(s)	248, 321
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	10, 223, 476
KroI	GCCGGC	2 cut(s)	44, 112
KroNI	GCCGGC	2 cut(s)	46, 114
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	352, 450, 486, 510
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	4 cut(s)	41, 264, 397, 509
LweI	GCATC	4 cut(s)	31, 397, 466, 484
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	4 cut(s)	354, 452, 488, 512
MboI	GATC	4 cut(s)	352, 450, 486, 510
MboII	GAAGA	1 cut(s)	251
MfeI	CAATTG	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	150, 174
MnlI	CCTC	9 cut(s)	3, 6, 64, 154, 157, 316, 437, 547, 683
Mox20I	TGGCCA	1 cut(s)	422
Mph1103I	ATGCAT	2 cut(s)	332, 445
MroNI	GCCGGC	2 cut(s)	44, 112
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	2 cut(s)	471, 474
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	4 cut(s)	45, 113, 173, 541
MspR9I	CCNGG	2 cut(s)	380, 541
MunI	CAATTG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	6 cut(s)	24, 54, 63, 89, 252, 503
NaeI	GCCGGC	2 cut(s)	46, 114
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	4 cut(s)	352, 450, 486, 510
NgoMIV	GCCGGC	2 cut(s)	44, 112
NlaIII	CATG	3 cut(s)	10, 223, 476
NlaIV	GGNNCC	1 cut(s)	49
NsiI	ATGCAT	2 cut(s)	332, 445
NspV	TTCGAA	1 cut(s)	588
PaqCI	CACCTGC	1 cut(s)	59
PdiI	GCCGGC	2 cut(s)	46, 114
PfeI	GAWTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	56, 254, 387, 499
PpuMI	RGGWCCY	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	73, 175
PspPPI	RGGWCCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	471, 474
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	55, 253, 386, 498
Sau3AI	GATC	4 cut(s)	352, 450, 486, 510
Sau96I	GGNCC	2 cut(s)	73, 175
ScrFI	CCNGG	2 cut(s)	380, 541
SduI	GDGCHC	1 cut(s)	561
SexAI	ACCWGGT	1 cut(s)	378
SfaNI	GCATC	4 cut(s)	31, 397, 466, 484
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	471, 474
SmlI	CTYRAG	3 cut(s)	77, 224, 560
SmoI	CTYRAG	3 cut(s)	77, 224, 560
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	378, 539
StyI	CCWWGG	2 cut(s)	84, 501
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	492, 588
TasI	AATT	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	68, 213
TseI	GCWGC	4 cut(s)	54, 252, 385, 497
TspDTI	ATGAA	4 cut(s)	17, 209, 289, 612
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	2 cut(s)	68, 213
Van91I	CCANNNNNTGG	1 cut(s)	343
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	73
XspI	CTAG	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	2 cut(s)	332, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.