Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

9623742 .. 9626273

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1132600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCGAAGGCAACGGTTCATTTGCAAATCCTGCGAAGGTAGTTCCGGCGGACATGGCGTCGGCATGTACTGCAAGGGGTGCTACATGGAGCTCAAGGATAAGATTGAATTTCTCAAGTTGTGCTCGCCGTCGCCGACCACTTCTACTACTACGTCCCTGGCAGCTTCCTTCTCCGACGTCGTTCTGATTGCCTTGGACTCTGACAACTGCTCTTCTGAGCCTCCGCTGCCCGTTCAGGCTCATAAGGCCGTTCTGGTGAACCGCTCTCCGGTGTTCAGAGCCATGCTTGAGAATGAAGAGATGGAAGAAAGTCGGAGTGGTACCGTTAAGATTGCCGATGTGCGCTACGATGCCCTACAAGCTTTTGTCAACTACCTCTACTCTGCTGAGACATGCCTTAACCAGAACTTGGCATGTGACCTCCTAATACTGGCTGAAAAATACCAAGTGCAGCATCTCAAGCACTACTGCCAGAAATTCTTGGTGTCCAAGCTCAACTGGGACAATGCGCTTACGACCTACACCTTCGCTTGCTGCCATAACGCGGAGGACATCATGGACGCGGCCTTGGAAGTGATCACAGACAACATGGACAAGCTCACTACCCAGTTGGAGTACGTCAATTTGGTGGAGAAAGATCCCCAACTCGTCATCAAAATCTACGAAACTTATCTCTCCAAACAGGTTAACACTGCAGCACGTAGGAATCCATCAGTCCGCAGAGATTCTTCGAGTGGGAGTGGGATTGGGGGAGGGTCGAGCGACGGGGGAGGGAGTGGGAATGTGAGTGTTTCTTCATGGTGTGATCCTTTTTTATCATGGAGGGAGGCGGACCGTTGTGCGGATTTTCTGGTGGCCATCTGCAGTTTAGGAGGTCTTTTTGTGTGGTTTGTTTGTGTGCTGGTCTCCAAGGTTGGGCTTGAGCCATTTTCTTTATGTGTTTGTGCCCCAATTTTTTTATTTTTTATTTTTTATTTTTTTTGGTGCTTTACTTGTTTGGGCCTTTGTTGTACTTGTTTTGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

343

Amino Acids

38.04

Weight (kDa)

5.23

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	57 - 164	1.6e-20	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
Acc65I	GGTACC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	264
AccII	CGCG	2 cut(s)	545, 563
AciI	CCGC	8 cut(s)	48, 224, 262, 545, 563, 718, 830, 842
AclWI	GGATC	2 cut(s)	632, 800
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	2 cut(s)	107, 476
AcyI	GRCGYC	2 cut(s)	57, 177
AfaI	GTAC	4 cut(s)	68, 322, 617, 1012
AfiI	CCNNNNNNNGG	6 cut(s)	268, 409, 430, 544, 841, 915
AgsI	TTSAA	1 cut(s)	107
AhdI	GACNNNNNGTC	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	91, 164, 362, 493, 598
AluI	AGCT	5 cut(s)	91, 164, 362, 493, 598
Alw21I	GWGCWC	2 cut(s)	93, 125
Alw26I	GTCTC	2 cut(s)	383, 910
AlwI	GGATC	2 cut(s)	632, 800
AoxI	GGCC	4 cut(s)	246, 564, 855, 1000
ApeKI	GCWGC	5 cut(s)	161, 226, 451, 534, 695
ApoI	RAATTY	2 cut(s)	107, 476
Asp718I	GGTACC	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	345, 511
AspS9I	GGNCC	2 cut(s)	832, 1000
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	949
BalI	TGGCCA	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	93, 125
BbvI	GCAGC	5 cut(s)	173, 213, 463, 521, 707
BccI	CCATC	3 cut(s)	295, 718, 866
BceAI	ACGGC	2 cut(s)	112, 233
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	383, 910
BfmI	CTRYAG	2 cut(s)	693, 862
BisI	GCNGC	6 cut(s)	162, 227, 452, 535, 564, 696
BlsI	GCNGC	6 cut(s)	163, 228, 453, 536, 565, 697
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	832
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	832, 1000
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	2 cut(s)	508, 601
BmsI	GCATC	2 cut(s)	340, 463
BmuI	ACTGGG	2 cut(s)	508, 601
BpuEI	CTTGAG	5 cut(s)	77, 98, 308, 443, 941
BsaAI	YACGTR	1 cut(s)	701
BsaHI	GRCGYC	2 cut(s)	57, 177
BsaI	GGTCTC	1 cut(s)	910
BsaJI	CCNNGG	4 cut(s)	156, 192, 567, 909
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	6 cut(s)	268, 409, 430, 544, 841, 915
Bse1I	ACTGG	3 cut(s)	435, 503, 607
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	4 cut(s)	156, 192, 567, 909
BseLI	CCNNNNNNNGG	6 cut(s)	268, 409, 430, 544, 841, 915
BseMII	CTCAG	2 cut(s)	207, 378
BseNI	ACTGG	3 cut(s)	435, 503, 607
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	5 cut(s)	173, 213, 463, 521, 707
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	545, 563
BshFI	GGCC	4 cut(s)	248, 566, 857, 1002
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	93, 125
BsiSI	CCGG	2 cut(s)	45, 269
BslFI	GGGAC	2 cut(s)	139, 515
BslI	CCNNNNNNNGG	6 cut(s)	268, 409, 430, 544, 841, 915
BsmAI	GTCTC	2 cut(s)	383, 910
BsmFI	GGGAC	2 cut(s)	139, 515
BsnI	GGCC	4 cut(s)	248, 566, 857, 1002
Bso31I	GGTCTC	1 cut(s)	910
Bsp1286I	GDGCHC	3 cut(s)	93, 125, 949
Bsp143I	GATC	3 cut(s)	576, 637, 805
BspACI	CCGC	8 cut(s)	48, 224, 262, 545, 563, 718, 830, 842
BspANI	GGCC	4 cut(s)	248, 566, 857, 1002
BspCNI	CTCAG	2 cut(s)	208, 379
BspFNI	CGCG	2 cut(s)	545, 563
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	2 cut(s)	697, 866
BspPI	GGATC	2 cut(s)	632, 800
BspQI	GCTCTTC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	910
BsrBI	CCGCTC	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	435, 503, 607
BssECI	CCNNGG	4 cut(s)	156, 192, 567, 909
BssMI	GATC	3 cut(s)	576, 637, 805
BssNI	GRCGYC	2 cut(s)	57, 177
BssT1I	CCWWGG	3 cut(s)	192, 567, 909
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	15, 325, 836
Bst6I	CTCTTC	2 cut(s)	217, 291
BstACI	GRCGYC	2 cut(s)	57, 177
BstAPI	GCANNNNNTGC	3 cut(s)	30, 69, 78
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	125, 532
BstDEI	CTNAG	2 cut(s)	216, 387
BstFNI	CGCG	2 cut(s)	545, 563
BstHHI	GCGC	2 cut(s)	345, 511
BstKTI	GATC	3 cut(s)	579, 640, 808
BstMAI	GTCTC	2 cut(s)	383, 910
BstMBI	GATC	3 cut(s)	576, 637, 805
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 54, 69, 78, 226, 245, 359, 460
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	3 cut(s)	67, 396, 417
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	2 cut(s)	693, 862
BstSLI	GKGCMC	1 cut(s)	949
BstUI	CGCG	2 cut(s)	545, 563
BstV1I	GCAGC	5 cut(s)	173, 213, 463, 521, 707
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	4 cut(s)	248, 566, 857, 1002
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	2 cut(s)	125, 532
CfoI	GCGC	2 cut(s)	345, 511
Cfr13I	GGNCC	2 cut(s)	832, 1000
CpoI	CGGWCCG	1 cut(s)	832
CseI	GACGC	2 cut(s)	46, 569
Csp6I	GTAC	4 cut(s)	67, 321, 616, 1011
CspI	CGGWCCG	1 cut(s)	832
CviQI	GTAC	4 cut(s)	67, 321, 616, 1011
DdeI	CTNAG	2 cut(s)	216, 387
DpnI	GATC	3 cut(s)	578, 639, 807
DpnII	GATC	3 cut(s)	576, 637, 805
DriI	GACNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	2 cut(s)	217, 291
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	2 cut(s)	217, 291
EciI	GGCGGA	2 cut(s)	63, 845
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	192, 567, 909
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	832
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	3 cut(s)	192, 567, 909
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	192, 567, 909
FaqI	GGGAC	2 cut(s)	139, 515
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	162, 227, 452, 535, 564, 696
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	6 cut(s)	162, 227, 452, 535, 564, 696
GlaI	GCGC	2 cut(s)	344, 510
GluI	GCNGC	6 cut(s)	162, 227, 452, 535, 564, 696
HaeIII	GGCC	4 cut(s)	248, 566, 857, 1002
HapII	CCGG	2 cut(s)	45, 269
HgaI	GACGC	2 cut(s)	46, 569
HhaI	GCGC	2 cut(s)	345, 511
Hin1I	GRCGYC	2 cut(s)	57, 177
Hin6I	GCGC	2 cut(s)	343, 509
HinP1I	GCGC	2 cut(s)	343, 509
HincII	GTYRAC	2 cut(s)	370, 688
HindII	GTYRAC	2 cut(s)	370, 688
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	3 cut(s)	197, 706, 725
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	45, 269
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	3 cut(s)	259, 370, 688
Hpy188I	TCNGA	6 cut(s)	175, 186, 202, 217, 278, 315
Hpy8I	GTNNAC	3 cut(s)	259, 370, 688
Hpy99I	CGWCG	5 cut(s)	62, 133, 179, 182, 767
HpyAV	CCTTC	3 cut(s)	29, 178, 535
HpyCH4III	ACNGT	3 cut(s)	15, 325, 836
HpyCH4IV	ACGT	4 cut(s)	152, 177, 618, 700
HpyCH4V	TGCA	5 cut(s)	24, 72, 451, 695, 864
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 54, 69, 78, 226, 245, 359, 460
HpyF3I	CTNAG	2 cut(s)	216, 387
HpySE526I	ACGT	4 cut(s)	152, 177, 618, 700
Hsp92I	GRCGYC	2 cut(s)	57, 177
HspAI	GCGC	2 cut(s)	343, 509
KpnI	GGTACC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	576
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	3 cut(s)	576, 637, 805
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	5 cut(s)	173, 213, 463, 521, 707
LweI	GCATC	2 cut(s)	340, 463
MaeII	ACGT	4 cut(s)	152, 177, 618, 700
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	578, 639, 807
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	3 cut(s)	576, 637, 805
MboII	GAAGA	5 cut(s)	204, 308, 317, 720, 786
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	3 cut(s)	93, 125, 949
MlsI	TGGCCA	1 cut(s)	857
MluCI	AATT	4 cut(s)	107, 476, 622, 951
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	3 cut(s)	198, 293, 591
MnlI	CCTC	9 cut(s)	231, 386, 431, 541, 746, 764, 816, 820, 866
Mox20I	TGGCCA	1 cut(s)	857
MscI	TGGCCA	1 cut(s)	857
MseI	TTAA	3 cut(s)	327, 399, 687
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	2 cut(s)	45, 269
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	2 cut(s)	545, 563
MwoI	GCNNNNNNNGC	8 cut(s)	30, 54, 69, 78, 226, 245, 359, 460
NdeII	GATC	3 cut(s)	576, 637, 805
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	3 cut(s)	67, 396, 417
PciSI	GCTCTTC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	706, 725
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	6 cut(s)	163, 228, 453, 536, 565, 697
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	832, 1000
PstI	CTGCAG	2 cut(s)	697, 866
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	4 cut(s)	68, 322, 617, 1012
RsaNI	GTAC	4 cut(s)	67, 321, 616, 1011
Rsr2I	CGGWCCG	1 cut(s)	832
RsrII	CGGWCCG	1 cut(s)	832
SacI	GAGCTC	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	327, 399, 687
SatI	GCNGC	6 cut(s)	162, 227, 452, 535, 564, 696
Sau3AI	GATC	3 cut(s)	576, 637, 805
Sau96I	GGNCC	2 cut(s)	832, 1000
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	93, 125, 949
SfaNI	GCATC	2 cut(s)	340, 463
SfcI	CTRYAG	2 cut(s)	693, 862
SinI	GGWCC	1 cut(s)	832
SmlI	CTYRAG	5 cut(s)	92, 113, 287, 458, 920
SmoI	CTYRAG	5 cut(s)	92, 113, 287, 458, 920
Sse9I	AATT	4 cut(s)	107, 476, 622, 951
SsiI	CCGC	8 cut(s)	48, 224, 262, 545, 563, 718, 830, 842
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	3 cut(s)	192, 567, 909
TaaI	ACNGT	3 cut(s)	15, 325, 836
TaiI	ACGT	4 cut(s)	155, 180, 621, 703
TaqI	TCGA	2 cut(s)	731, 758
TasI	AATT	4 cut(s)	107, 476, 622, 951
TatI	WGTACW	2 cut(s)	66, 1010
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	706, 725
Tru1I	TTAA	3 cut(s)	327, 399, 687
Tru9I	TTAA	3 cut(s)	327, 399, 687
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	5 cut(s)	161, 226, 451, 534, 695
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	7, 309, 786
TspRI	CASTG	1 cut(s)	697
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	2 cut(s)	107, 476
XceI	RCATGY	3 cut(s)	67, 396, 417
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.