Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

11386459 .. 11387662

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACGACAAGACAGGCGGCATCATCATCATCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGTCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTCCACAAGCTCCCAACCCATCTCCATCTCCTTCTCCGACGTCGTTTTGGTTGCCTCCCAGGATCCCTCCGCCGCAGGGCTCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGCCGTTCTCCGGTATTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTGTCCTATGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCCTAATATTGGCCGAAAAGTACCAGGTGCAGCATCTCAAGGACTATTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCACACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACGCGAGAGGAGTACATGGAGCTGGTGCAGAAAGATCCACGACTCGTGGTTGAAGTCTACGAGGCTTATCTGTCGAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTAGGTCCTGCAGTTAAGGCCCCCCTCCGTGATGCCTTTAGTGATCCAGATTATATCTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

279

Amino Acids

30.99

Weight (kDa)

4.89

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	75 - 181	3.5e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	2 cut(s)	153, 658
AciI	CCGC	3 cut(s)	17, 264, 267
AclWI	GGATC	4 cut(s)	251, 264, 683, 809
AcoI	YGGCCR	1 cut(s)	483
AcvI	CACGTG	2 cut(s)	89, 102
AcyI	GRCGYC	2 cut(s)	93, 234
AfaI	GTAC	2 cut(s)	494, 668
AfiI	CCNNNNNNNGG	5 cut(s)	270, 289, 322, 454, 481
AgsI	TTSAA	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	252, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	8 cut(s)	145, 204, 335, 437, 544, 570, 649, 676
AluI	AGCT	8 cut(s)	145, 204, 335, 437, 544, 570, 649, 676
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	4 cut(s)	251, 264, 683, 809
AoxI	GGCC	7 cut(s)	123, 171, 291, 300, 462, 483, 789
ApeKI	GCWGC	3 cut(s)	502, 614, 746
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	3 cut(s)	292, 776, 790
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	776
BamHI	GGATCC	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	147, 276
BauI	CACGAG	2 cut(s)	698, 768
BbrPI	CACGTG	2 cut(s)	89, 102
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	514, 626, 758
BccI	CCATC	3 cut(s)	221, 227, 346
BceAI	ACGGC	2 cut(s)	287, 300
BciT130I	CCWGG	2 cut(s)	254, 497
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	744, 780
BglI	GCCNNNNNGGC	3 cut(s)	299, 308, 369
BisI	GCNGC	5 cut(s)	18, 267, 503, 615, 747
BlsI	GCNGC	5 cut(s)	19, 268, 504, 616, 748
Bme1390I	CCNGG	2 cut(s)	254, 497
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	3 cut(s)	292, 776, 790
BmiI	GGNNCC	2 cut(s)	258, 792
BmrFI	CCNGG	2 cut(s)	254, 497
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	5 cut(s)	29, 391, 514, 601, 793
BmuI	ACTGGG	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpuEI	CTTGAG	5 cut(s)	131, 152, 173, 362, 494
BsaAI	YACGTR	2 cut(s)	89, 102
BsaHI	GRCGYC	2 cut(s)	93, 234
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	135, 174, 252
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 289, 322, 454, 481
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	254, 497
BseDI	CCNNGG	3 cut(s)	135, 174, 252
BseLI	CCNNNNNNNGG	5 cut(s)	270, 289, 322, 454, 481
BseMII	CTCAG	2 cut(s)	356, 429
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	4 cut(s)	134, 152, 155, 677
BseXI	GCAGC	3 cut(s)	514, 626, 758
BsgI	GTGCAG	3 cut(s)	521, 701, 750
Bsh1236I	CGCG	2 cut(s)	153, 658
BshFI	GGCC	7 cut(s)	125, 173, 293, 302, 464, 485, 791
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	96, 290, 323
BslFI	GGGAC	2 cut(s)	266, 566
BslI	CCNNNNNNNGG	5 cut(s)	270, 289, 322, 454, 481
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	266, 566
BsnI	GGCC	7 cut(s)	125, 173, 293, 302, 464, 485, 791
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	147, 276
Bsp143I	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
BspACI	CCGC	3 cut(s)	17, 264, 267
BspANI	GGCC	7 cut(s)	125, 173, 293, 302, 464, 485, 791
BspCNI	CTCAG	2 cut(s)	357, 430
BspFNI	CGCG	2 cut(s)	153, 658
BspLI	GGNNCC	2 cut(s)	258, 792
BspMAI	CTGCAG	2 cut(s)	748, 784
BspPI	GGATC	4 cut(s)	251, 264, 683, 809
BspTNI	GGTCTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	135, 174, 252
BssMI	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
BssNI	GRCGYC	2 cut(s)	93, 234
BssSI	CACGAG	2 cut(s)	698, 768
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	2 cut(s)	698, 768
Bst2UI	CCWGG	2 cut(s)	254, 497
BstACI	GRCGYC	2 cut(s)	93, 234
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstBAI	YACGTR	2 cut(s)	89, 102
BstC8I	GCNNGC	3 cut(s)	97, 313, 466
BstDEI	CTNAG	2 cut(s)	365, 438
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstFNI	CGCG	2 cut(s)	153, 658
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	7 cut(s)	159, 259, 384, 630, 691, 738, 817
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 111, 179, 299, 308, 369, 410, 655, 788
BstNI	CCWGG	2 cut(s)	254, 497
BstSCI	CCNGG	2 cut(s)	252, 495
BstSFI	CTRYAG	2 cut(s)	744, 780
BstUI	CGCG	2 cut(s)	153, 658
BstV1I	GCAGC	3 cut(s)	514, 626, 758
BstX2I	RGATCY	2 cut(s)	256, 688
BstYI	RGATCY	2 cut(s)	256, 688
BsuRI	GGCC	7 cut(s)	125, 173, 293, 302, 464, 485, 791
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	97, 313, 466
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	292, 776, 790
CseI	GACGC	2 cut(s)	92, 101
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	493, 667
CviAII	CATG	2 cut(s)	640, 670
CviQI	GTAC	2 cut(s)	493, 667
DdeI	CTNAG	2 cut(s)	365, 438
DpnI	GATC	7 cut(s)	158, 258, 383, 629, 690, 737, 816
DpnII	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
EaeI	YGGCCR	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	147, 276
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	776
Eco53kI	GAGCTC	1 cut(s)	145
Eco72I	CACGTG	2 cut(s)	89, 102
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	776, 790
EcoRII	CCWGG	2 cut(s)	252, 495
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	147, 276
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	643, 673
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	266, 566
FatI	CATG	2 cut(s)	639, 669
FbaI	TGATCA	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	5 cut(s)	18, 267, 503, 615, 747
FriOI	GRGCYC	2 cut(s)	147, 276
Fsp4HI	GCNGC	5 cut(s)	18, 267, 503, 615, 747
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	5 cut(s)	18, 267, 503, 615, 747
HaeIII	GGCC	7 cut(s)	125, 173, 293, 302, 464, 485, 791
HapII	CCGG	3 cut(s)	96, 290, 323
HgaI	GACGC	2 cut(s)	92, 101
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	2 cut(s)	93, 234
Hin1II	CATG	2 cut(s)	643, 673
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	3 cut(s)	346, 696, 758
HpaII	CCGG	3 cut(s)	96, 290, 323
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	421, 712
Hpy188I	TCNGA	3 cut(s)	232, 332, 351
Hpy188III	TCNNGA	3 cut(s)	71, 379, 818
Hpy8I	GTNNAC	2 cut(s)	421, 712
Hpy99I	CGWCG	4 cut(s)	86, 164, 236, 239
HpyAV	CCTTC	3 cut(s)	193, 235, 416
HpyCH4IV	ACGT	3 cut(s)	88, 101, 234
HpyCH4V	TGCA	9 cut(s)	60, 105, 502, 581, 614, 682, 746, 767, 782
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 111, 179, 299, 308, 369, 410, 655, 788
HpyF3I	CTNAG	2 cut(s)	365, 438
HpySE526I	ACGT	3 cut(s)	88, 101, 234
Hsp92I	GRCGYC	2 cut(s)	93, 234
Hsp92II	CATG	2 cut(s)	643, 673
HspAI	GCGC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
LmnI	GCTCC	3 cut(s)	142, 209, 673
Lsp1109I	GCAGC	3 cut(s)	514, 626, 758
LweI	GCATC	5 cut(s)	29, 391, 514, 601, 793
MabI	ACCWGGT	1 cut(s)	495
MaeII	ACGT	3 cut(s)	88, 101, 234
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	7 cut(s)	158, 258, 383, 629, 690, 737, 816
MboI	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
MboII	GAAGA	2 cut(s)	61, 753
MflI	RGATCY	2 cut(s)	256, 688
MhlI	GDGCHC	2 cut(s)	147, 276
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	3 cut(s)	96, 290, 323
MspR9I	CCNGG	2 cut(s)	254, 497
MvaI	CCWGG	2 cut(s)	254, 497
MvnI	CGCG	2 cut(s)	153, 658
MwoI	GCNNNNNNNGC	9 cut(s)	92, 111, 179, 299, 308, 369, 410, 655, 788
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	643, 673
NlaIV	GGNNCC	2 cut(s)	258, 792
NmuCI	GTSAC	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	346, 758
PkrI	GCNGC	5 cut(s)	19, 268, 504, 616, 748
PleI	GAGTC	1 cut(s)	690
PmaCI	CACGTG	2 cut(s)	89, 102
PmlI	CACGTG	2 cut(s)	89, 102
PpsI	GAGTC	1 cut(s)	690
Ppu21I	YACGTR	2 cut(s)	89, 102
PpuMI	RGGWCCY	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	776
Psp6I	CCWGG	2 cut(s)	252, 495
PspCI	CACGTG	2 cut(s)	89, 102
PspGI	CCWGG	2 cut(s)	252, 495
PspN4I	GGNNCC	2 cut(s)	258, 792
PspPI	GGNCC	3 cut(s)	292, 776, 790
PspPPI	RGGWCCY	1 cut(s)	776
PstI	CTGCAG	2 cut(s)	748, 784
PsuI	RGATCY	2 cut(s)	256, 688
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	494, 668
RsaNI	GTAC	2 cut(s)	493, 667
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	786
SatI	GCNGC	5 cut(s)	18, 267, 503, 615, 747
Sau3AI	GATC	7 cut(s)	156, 256, 381, 627, 688, 735, 814
Sau96I	GGNCC	3 cut(s)	292, 776, 790
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	2 cut(s)	254, 497
SduI	GDGCHC	2 cut(s)	147, 276
SexAI	ACCWGGT	1 cut(s)	495
SfaNI	GCATC	5 cut(s)	29, 391, 514, 601, 793
SfcI	CTRYAG	2 cut(s)	744, 780
SfiI	GGCCNNNNNGGCC	1 cut(s)	299
SinI	GGWCC	1 cut(s)	776
SmlI	CTYRAG	5 cut(s)	146, 167, 188, 341, 509
SmoI	CTYRAG	5 cut(s)	146, 167, 188, 341, 509
SsiI	CCGC	3 cut(s)	17, 264, 267
SspI	AATATT	2 cut(s)	480, 564
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	252, 495
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	3 cut(s)	91, 104, 237
TaqI	TCGA	3 cut(s)	159, 450, 728
TaqII	GACCGA	1 cut(s)	149
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	2 cut(s)	20, 269
TfiI	GAWTC	2 cut(s)	346, 758
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	502, 614, 746
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	2 cut(s)	268, 788
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	776
XagI	CCTNNNNNAGG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	711
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.