Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40632956 .. 40634381

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G487900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGACCTGCATATCTTGCCAGCTCATGTACTCCAAATATCAGGGCAGCGCGTGCAGGCAGTGCTACGAGGACCTCAAGGCCAAGGTCGAGCAGTGCAACGAGGACCTCAACGCCAAGGTCGAGCAGTGCAACGAGGACCTCAACGCCAAGCTCGCTTTTCTCACGATGCCCCAGCCGGCTTCCTTTTCCGACGTCGTTCTGTTTGCCGACGACGACGACGAGTACCCCGTACCCGTTCTGGCCCATAAGGCTGTTTTGGCGAACCGTTCTCCAGTGTTGAGAGCCATGCTTGATAATGAGATGAAAGAAAGCCTGAGTGGCACCATCAAGATTGGCGATGTCTCCTACAACGCCCTTCGCGCCTTCGTCAACTTCCTCTACACAGCTGAGGTATGCCTCGACCAGCAATTGGCCTGTGAGCTCCTTGTAATGTCTGAAAAATACCAGGTGCAGCATCTCAAAGACTTCTGCCAGAAGTTCTTGGTGTCCAACCTCAACTTGGACAATTCACTTTCGACCTACACCTTTGCGCACCAGCATAACTTTAAGCCGATCATCGACGCAGCCTTGACGCAGATCACAGCCAGCATGGACAAGCTTGCTTCCCAGGACGAGTACACGGAGCTGAAGGAGAGAGATCCGGGACTCTTATTAGAAATCTATGAAGCTTATTTTTCCAAACAAGCTGACACTACAATGTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

237

Amino Acids

26.81

Weight (kDa)

4.69

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
Acc16I	TGCGCA	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	2 cut(s)	53, 363
AclWI	GGATC	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	4 cut(s)	32, 227, 234, 620
AfiI	CCNNNNNNNGG	2 cut(s)	412, 502
AjnI	CCWGG	2 cut(s)	447, 609
AluBI	AGCT	8 cut(s)	25, 154, 389, 424, 601, 628, 671, 689
AluI	AGCT	8 cut(s)	25, 154, 389, 424, 601, 628, 671, 689
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	3 cut(s)	81, 243, 414
ApeKI	GCWGC	3 cut(s)	48, 454, 566
AspLEI	GCGC	3 cut(s)	53, 365, 535
AspS9I	GGNCC	5 cut(s)	6, 73, 106, 139, 244
AsuC2I	CCSGG	1 cut(s)	645
AvaII	GGWCC	4 cut(s)	6, 73, 106, 139
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	60, 466, 578
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	449, 611
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	17
BglI	GCCNNNNNGGC	2 cut(s)	251, 321
BisI	GCNGC	3 cut(s)	49, 455, 567
BlsI	GCNGC	3 cut(s)	50, 456, 568
Bme1390I	CCNGG	3 cut(s)	449, 611, 645
Bme18I	GGWCC	4 cut(s)	6, 73, 106, 139
BmgT120I	GGNCC	5 cut(s)	6, 73, 106, 139, 244
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	449, 611, 645
BmsI	GCATC	2 cut(s)	159, 466
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	84, 117, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 502
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	449, 611
BseDI	CCNNGG	3 cut(s)	84, 117, 609
BseLI	CCNNNNNNNGG	2 cut(s)	412, 502
BseMII	CTCAG	2 cut(s)	308, 381
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	60, 466, 578
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	2 cut(s)	76, 473
Bsh1236I	CGCG	2 cut(s)	53, 363
BshFI	GGCC	3 cut(s)	83, 245, 416
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	179, 644
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	2 cut(s)	412, 502
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	3 cut(s)	83, 245, 416
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	555, 579, 640
BspANI	GGCC	3 cut(s)	83, 245, 416
BspCNI	CTCAG	2 cut(s)	309, 382
BspFNI	CGCG	2 cut(s)	53, 363
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	635
BspT107I	GGYRCC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	84, 117, 609
BssMI	GATC	3 cut(s)	555, 579, 640
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	84, 117
Bst2UI	CCWGG	2 cut(s)	449, 611
Bst4CI	ACNGT	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	3 cut(s)	18, 54, 63
BstC8I	GCNNGC	7 cut(s)	23, 55, 59, 156, 180, 589, 603
BstDEI	CTNAG	2 cut(s)	317, 390
BstFNI	CGCG	2 cut(s)	53, 363
BstHHI	GCGC	3 cut(s)	53, 365, 535
BstKTI	GATC	3 cut(s)	558, 582, 643
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	555, 579, 640
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 54, 63, 155, 251, 260, 321, 362
BstNI	CCWGG	2 cut(s)	449, 611
BstSCI	CCNGG	3 cut(s)	447, 609, 643
BstUI	CGCG	2 cut(s)	53, 363
BstV1I	GCAGC	3 cut(s)	60, 466, 578
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	83, 245, 416
BtgZI	GCGATG	1 cut(s)	354
BtsI	GCAGTG	3 cut(s)	68, 101, 134
BtsIMutI	CAGTG	4 cut(s)	68, 101, 134, 282
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	7 cut(s)	23, 55, 59, 156, 180, 589, 603
CfoI	GCGC	3 cut(s)	53, 365, 535
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	5 cut(s)	6, 73, 106, 139, 244
CseI	GACGC	2 cut(s)	572, 583
CsiI	ACCWGGT	1 cut(s)	447
Csp6I	GTAC	4 cut(s)	31, 226, 233, 619
CviAII	CATG	3 cut(s)	28, 289, 592
CviQI	GTAC	4 cut(s)	31, 226, 233, 619
DdeI	CTNAG	2 cut(s)	317, 390
DpnI	GATC	3 cut(s)	557, 581, 642
DpnII	GATC	3 cut(s)	555, 579, 640
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	84, 117
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	4 cut(s)	6, 73, 106, 139
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	424
EcoO109I	RGGNCCY	4 cut(s)	6, 73, 106, 139
EcoRII	CCWGG	2 cut(s)	447, 609
EcoT14I	CCWWGG	2 cut(s)	84, 117
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	84, 117
FaeI	CATG	3 cut(s)	31, 292, 595
FaiI	YATR	9 cut(s)	14, 29, 249, 290, 397, 543, 593, 666, 705
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	3 cut(s)	27, 288, 591
Fnu4HI	GCNGC	3 cut(s)	49, 455, 567
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	49, 455, 567
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	3 cut(s)	52, 364, 534
GluI	GCNGC	3 cut(s)	49, 455, 567
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	83, 245, 416
HapII	CCGG	2 cut(s)	179, 644
HgaI	GACGC	2 cut(s)	572, 583
HhaI	GCGC	3 cut(s)	53, 365, 535
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	31, 292, 595
Hin6I	GCGC	3 cut(s)	51, 363, 533
HinP1I	GCGC	3 cut(s)	51, 363, 533
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	599, 669
HinfI	GANTC	1 cut(s)	648
HpaII	CCGG	2 cut(s)	179, 644
Hpy166II	GTNNAC	2 cut(s)	373, 621
Hpy188I	TCNGA	2 cut(s)	193, 439
Hpy188III	TCNNGA	2 cut(s)	166, 331
Hpy8I	GTNNAC	2 cut(s)	373, 621
Hpy99I	CGWCG	7 cut(s)	197, 200, 215, 218, 221, 224, 566
HpyAV	CCTTC	3 cut(s)	368, 376, 625
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	12, 57, 99, 132, 454
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 54, 63, 155, 251, 260, 321, 362
HpyF3I	CTNAG	2 cut(s)	317, 390
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	31, 292, 595
HspAI	GCGC	3 cut(s)	51, 363, 533
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	555, 579, 640
LmnI	GCTCC	2 cut(s)	429, 625
Lsp1109I	GCAGC	3 cut(s)	60, 466, 578
LweI	GCATC	2 cut(s)	159, 466
MabI	ACCWGGT	1 cut(s)	447
MaeII	ACGT	1 cut(s)	195
MalI	GATC	3 cut(s)	557, 581, 642
MboI	GATC	3 cut(s)	555, 579, 640
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	410, 508
MlyI	GAGTC	1 cut(s)	642
MmeI	TCCRAC	2 cut(s)	216, 516
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	179, 644
MspR9I	CCNGG	3 cut(s)	449, 611, 645
MunI	CAATTG	1 cut(s)	410
MvaI	CCWGG	2 cut(s)	449, 611
MvnI	CGCG	2 cut(s)	53, 363
MwoI	GCNNNNNNNGC	8 cut(s)	18, 54, 63, 155, 251, 260, 321, 362
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	645
NdeII	GATC	3 cut(s)	555, 579, 640
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	3 cut(s)	31, 292, 595
NlaIV	GGNNCC	1 cut(s)	325
NsbI	TGCGCA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 219, 228
PdiI	GCCGGC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	412
PfoI	TCCNGGA	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	50, 456, 568
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PpuMI	RGGWCCY	4 cut(s)	6, 73, 106, 139
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	4 cut(s)	6, 73, 106, 139
Psp6I	CCWGG	2 cut(s)	447, 609
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	447, 609
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	5 cut(s)	6, 73, 106, 139, 244
PspPPI	RGGWCCY	4 cut(s)	6, 73, 106, 139
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	4 cut(s)	32, 227, 234, 620
RsaNI	GTAC	4 cut(s)	31, 226, 233, 619
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	49, 455, 567
Sau3AI	GATC	3 cut(s)	555, 579, 640
Sau96I	GGNCC	5 cut(s)	6, 73, 106, 139, 244
SchI	GAGTC	1 cut(s)	642
ScrFI	CCNGG	3 cut(s)	449, 611, 645
SduI	GDGCHC	1 cut(s)	426
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	159, 466
SinI	GGWCC	4 cut(s)	6, 73, 106, 139
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	410, 508
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	447, 609, 643
StyI	CCWWGG	2 cut(s)	84, 117
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	5 cut(s)	90, 123, 402, 518, 561
TasI	AATT	2 cut(s)	410, 508
TatI	WGTACW	2 cut(s)	30, 618
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	4 cut(s)	68, 101, 134, 282
TseI	GCWGC	3 cut(s)	48, 454, 566
TspDTI	ATGAA	2 cut(s)	320, 681
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	4 cut(s)	68, 101, 134, 282
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	4 cut(s)	6, 73, 106, 139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.