Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40657533 .. 40660251

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G488400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGGTGCATATCTTGCAATGGCAGATACGACGCCGGCACCTGCAAGAAGTGCCACGAGGACCTCAAGACGTGCCACGAGGACCTCAAGGCCAAGGTCGCTTTTCTCACGACGTCCCAGCCGGATTCTTTCTCTGACGTCGTTCTGTTTGCCGCCGACGGCGGGTCTGCCCAGGCCGCTGTACCCGTTCCGGCCCATAAGGCCGTTTTGGTGAGCCGTTCTCCGGTGTTCAATGCCATGTTTGAGAATGAGATGGAAGAAAGCCTGAGTGGCACTATCAAGATCCGCGATGTGTCCTACGGCACCCTTCGTGCCTTCGTCAACTACCTCGACACAACTGAGGTGGTATGCCTTGACCAGCAATTGGCATGTGACCTCCTAGTAATGGCTGAAAAATACCAGGTGCACCATCTCAAAGATTTGTGCCAGAAGTTCTTGGTGGCCAACCTCAACTGGGAGAATTCTTTTTCGATCTACACCTTCGTGCACCAGCATAACGCCAAGAAGATCATCGACGCAGCCTTGACGTTGATCATAGACAACATGGACAAGCTTACTGCCCGGGAGGAGTATGCTGAGCTGAAGGAGAAGGATCCACAACTTGTATTTGAAATCTATGAAGCTTATCTCTCCAAACAGGTTAATAAAGCAGCAGCAAAGAAGGGTCCGAATCCTCCCAAATTTAATTGGGAAGGAATGTACATTGGAGATTATGAACAGTTGCCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

244

Amino Acids

27.37

Weight (kDa)

5.41

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
AatII	GACGTC	2 cut(s)	116, 141
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	38, 302
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccII	CGCG	1 cut(s)	288
AciI	CCGC	4 cut(s)	153, 162, 177, 286
AclWI	GGATC	3 cut(s)	277, 587, 600
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	460, 680
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	3 cut(s)	33, 113, 138
AfaI	GTAC	2 cut(s)	183, 701
AfiI	CCNNNNNNNGG	5 cut(s)	162, 223, 364, 385, 454
AgsI	TTSAA	2 cut(s)	232, 611
AhdI	GACNNNNNGTC	1 cut(s)	163
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	171, 399
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	553, 580, 623
AluI	AGCT	3 cut(s)	553, 580, 623
Alw21I	GWGCWC	2 cut(s)	408, 489
Alw44I	GTGCAC	2 cut(s)	404, 485
AlwI	GGATC	3 cut(s)	277, 587, 600
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	5 cut(s)	90, 174, 192, 201, 441
ApaLI	GTGCAC	2 cut(s)	404, 485
ApeKI	GCWGC	3 cut(s)	518, 650, 653
ApoI	RAATTY	2 cut(s)	460, 680
AspS9I	GGNCC	4 cut(s)	61, 82, 193, 665
AsuC2I	CCSGG	2 cut(s)	562, 563
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	3 cut(s)	61, 82, 665
BaeGI	GKGCMC	2 cut(s)	408, 489
BalI	TGGCCA	1 cut(s)	443
BamHI	GGATCC	1 cut(s)	592
BanI	GGYRCC	2 cut(s)	38, 302
BauI	CACGAG	2 cut(s)	56, 77
Bbv12I	GWGCWC	2 cut(s)	408, 489
BbvI	GCAGC	3 cut(s)	530, 662, 665
BccI	CCATC	2 cut(s)	247, 417
BceAI	ACGGC	4 cut(s)	175, 188, 201, 316
BciT130I	CCWGG	2 cut(s)	173, 401
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	562, 563
BfaI	CTAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	50
BglI	GCCNNNNNGGC	2 cut(s)	200, 270
BisI	GCNGC	5 cut(s)	153, 177, 519, 651, 654
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	5 cut(s)	154, 178, 520, 652, 655
Bme1390I	CCNGG	4 cut(s)	173, 401, 562, 563
Bme18I	GGWCC	3 cut(s)	61, 82, 665
BmeRI	GACNNNNNGTC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	561
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	4 cut(s)	61, 82, 193, 665
BmiI	GGNNCC	4 cut(s)	40, 304, 594, 666
BmrFI	CCNGG	4 cut(s)	173, 401, 562, 563
BmrI	ACTGGG	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	463
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	50, 71
BpuMI	CCSGG	2 cut(s)	562, 563
BsaHI	GRCGYC	3 cut(s)	33, 113, 138
BsaJI	CCNNGG	3 cut(s)	93, 171, 561
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 223, 364, 385, 454
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	173, 401
BseDI	CCNNGG	3 cut(s)	93, 171, 561
BseLI	CCNNNNNNNGG	5 cut(s)	162, 223, 364, 385, 454
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	257, 330, 567
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	2 cut(s)	408, 489
BseXI	GCAGC	3 cut(s)	530, 662, 665
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	92, 176, 194, 203, 443
BshNI	GGYRCC	2 cut(s)	38, 302
BsiHKAI	GWGCWC	2 cut(s)	408, 489
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	6 cut(s)	36, 122, 191, 224, 562, 725
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	5 cut(s)	162, 223, 364, 385, 454
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	5 cut(s)	92, 176, 194, 203, 443
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	408, 489
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	5 cut(s)	282, 471, 507, 531, 592
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	4 cut(s)	153, 162, 177, 286
BspANI	GGCC	5 cut(s)	92, 176, 194, 203, 443
BspCNI	CTCAG	3 cut(s)	258, 331, 568
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	40, 304, 594, 666
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	3 cut(s)	277, 587, 600
BspT107I	GGYRCC	2 cut(s)	38, 302
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	93, 171, 561
BssMI	GATC	5 cut(s)	282, 471, 507, 531, 592
BssNI	GRCGYC	3 cut(s)	33, 113, 138
BssSI	CACGAG	2 cut(s)	56, 77
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	2 cut(s)	56, 77
Bst2UI	CCWGG	2 cut(s)	173, 401
Bst4CI	ACNGT	1 cut(s)	720
BstACI	GRCGYC	3 cut(s)	33, 113, 138
BstAPI	GCANNNNNTGC	2 cut(s)	15, 51
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	3 cut(s)	266, 339, 576
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	5 cut(s)	285, 474, 510, 534, 595
BstMBI	GATC	5 cut(s)	282, 471, 507, 531, 592
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 51, 98, 176, 200, 270
BstNI	CCWGG	2 cut(s)	173, 401
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	4 cut(s)	171, 399, 560, 561
BstSLI	GKGCMC	2 cut(s)	408, 489
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	530, 662, 665
BstX2I	RGATCY	2 cut(s)	282, 592
BstYI	RGATCY	2 cut(s)	282, 592
BsuRI	GGCC	5 cut(s)	92, 176, 194, 203, 443
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	4 cut(s)	61, 82, 193, 665
Cfr9I	CCCGGG	1 cut(s)	561
CseI	GACGC	2 cut(s)	41, 524
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	182, 700
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	3 cut(s)	238, 369, 544
CviQI	GTAC	2 cut(s)	182, 700
DdeI	CTNAG	3 cut(s)	266, 339, 576
DpnI	GATC	5 cut(s)	284, 473, 509, 533, 594
DpnII	GATC	5 cut(s)	282, 471, 507, 531, 592
DriI	GACNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	61, 82, 665
Eco57I	CTGAAG	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	561
EcoO109I	RGGNCCY	2 cut(s)	61, 82
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	171, 399
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	241, 372, 547
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	237, 368, 543
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	5 cut(s)	153, 177, 519, 651, 654
Fsp4HI	GCNGC	5 cut(s)	153, 177, 519, 651, 654
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	5 cut(s)	153, 177, 519, 651, 654
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	5 cut(s)	92, 176, 194, 203, 443
HapII	CCGG	6 cut(s)	36, 122, 191, 224, 562, 725
HgaI	GACGC	2 cut(s)	41, 524
Hin1I	GRCGYC	3 cut(s)	33, 113, 138
Hin1II	CATG	3 cut(s)	241, 372, 547
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	2 cut(s)	551, 621
HinfI	GANTC	2 cut(s)	125, 670
HpaII	CCGG	6 cut(s)	36, 122, 191, 224, 562, 725
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	322, 406, 487
Hpy188I	TCNGA	2 cut(s)	136, 669
Hpy188III	TCNNGA	3 cut(s)	67, 109, 280
Hpy8I	GTNNAC	3 cut(s)	322, 406, 487
Hpy99I	CGWCG	5 cut(s)	35, 115, 143, 161, 518
HpyAV	CCTTC	7 cut(s)	317, 325, 490, 577, 583, 655, 686
HpyCH4III	ACNGT	1 cut(s)	720
HpyCH4IV	ACGT	4 cut(s)	71, 113, 138, 527
HpyCH4V	TGCA	5 cut(s)	9, 18, 45, 406, 487
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 51, 98, 176, 200, 270
HpyF3I	CTNAG	3 cut(s)	266, 339, 576
HpySE526I	ACGT	4 cut(s)	71, 113, 138, 527
Hsp92I	GRCGYC	3 cut(s)	33, 113, 138
Hsp92II	CATG	3 cut(s)	241, 372, 547
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	5 cut(s)	282, 471, 507, 531, 592
Lsp1109I	GCAGC	3 cut(s)	530, 662, 665
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	4 cut(s)	71, 113, 138, 527
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	5 cut(s)	284, 473, 509, 533, 594
MboI	GATC	5 cut(s)	282, 471, 507, 531, 592
MboII	GAAGA	2 cut(s)	269, 517
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	2 cut(s)	282, 592
MhlI	GDGCHC	2 cut(s)	408, 489
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	4 cut(s)	362, 460, 680, 685
MluNI	TGGCCA	1 cut(s)	443
Mox20I	TGGCCA	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	642, 684, 730
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	6 cut(s)	36, 122, 191, 224, 562, 725
MspR9I	CCNGG	4 cut(s)	173, 401, 562, 563
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	173, 401
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	6 cut(s)	15, 51, 98, 176, 200, 270
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	562, 563
NdeII	GATC	5 cut(s)	282, 471, 507, 531, 592
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	241, 372, 547
NlaIV	GGNNCC	4 cut(s)	40, 304, 594, 666
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	372
OliI	CACNNNNGTG	1 cut(s)	482
PaqCI	CACCTGC	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	125, 670
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	154, 178, 520, 652, 655
PpuMI	RGGWCCY	2 cut(s)	61, 82
Psp5II	RGGWCCY	2 cut(s)	61, 82
Psp6I	CCWGG	2 cut(s)	171, 399
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	171, 399
PspN4I	GGNNCC	4 cut(s)	40, 304, 594, 666
PspPI	GGNCC	4 cut(s)	61, 82, 193, 665
PspPPI	RGGWCCY	2 cut(s)	61, 82
PsuI	RGATCY	2 cut(s)	282, 592
RsaI	GTAC	2 cut(s)	183, 701
RsaNI	GTAC	2 cut(s)	182, 700
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	642, 684, 730
SatI	GCNGC	5 cut(s)	153, 177, 519, 651, 654
Sau3AI	GATC	5 cut(s)	282, 471, 507, 531, 592
Sau96I	GGNCC	4 cut(s)	61, 82, 193, 665
ScrFI	CCNGG	4 cut(s)	173, 401, 562, 563
SduI	GDGCHC	2 cut(s)	408, 489
SexAI	ACCWGGT	1 cut(s)	399
SfiI	GGCCNNNNNGGCC	1 cut(s)	200
SinI	GGWCC	3 cut(s)	61, 82, 665
SmaI	CCCGGG	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	65, 86
SmoI	CTYRAG	2 cut(s)	65, 86
Sse9I	AATT	4 cut(s)	362, 460, 680, 685
SsiI	CCGC	4 cut(s)	153, 162, 177, 286
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	4 cut(s)	171, 399, 560, 561
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	720
TaiI	ACGT	4 cut(s)	74, 116, 141, 530
TaqI	TCGA	3 cut(s)	330, 470, 513
TasI	AATT	4 cut(s)	362, 460, 680, 685
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	2 cut(s)	155, 179
TfiI	GAWTC	2 cut(s)	125, 670
Tru1I	TTAA	3 cut(s)	642, 684, 730
Tru9I	TTAA	3 cut(s)	642, 684, 730
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	3 cut(s)	518, 650, 653
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	633, 729
TspMI	CCCGGG	1 cut(s)	561
Van91I	CCANNNNNTGG	1 cut(s)	364
VneI	GTGCAC	2 cut(s)	404, 485
VpaK11BI	GGWCC	3 cut(s)	61, 82, 665
XapI	RAATTY	2 cut(s)	460, 680
XceI	RCATGY	1 cut(s)	372
XmaI	CCCGGG	1 cut(s)	561
XspI	CTAG	1 cut(s)	380
ZraI	GACGTC	2 cut(s)	114, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.