Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40626822 .. 40629742

Gene Structure 2921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G487700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAGTGCATATCGTGCCAGGATCTCTACGACGAAGATGCCGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAAGAGGAGCTGAAGCGCGAGATCGACGAACTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTGGTCCCCAACTCCCAGCGCTAGGTCTCACCCCGCTTCCTTCTCCGACGTCGTTTTGGTTGCCTCCGAGGATACCTCCGCCGGAGCCCCTGTAGCCGTTCCGGCCCATAAGGCCGTTTTGGTGAGCCGTTCTCCGGTGTTCAGAGCCATGCTTGAGAATGAGATGGAAGAAAGCCTGAGTGGCACCATTAAGATTGGCGATGTGTCCTACGATGCCCTTCGCACGTTTGTCAACTACCTGTACACAGCTGAGGTATGCCTTGATGAGGATATGGCCTGCGACCTGCTAATACTGGCTGAAAAATACCAGGTGCAGCATCTCAAGGACTATTGTGAAAAGTTCTTGGTGTCCAAGCTGAATTGGGACAATTCAGTTATGAACTACACCTTTGCGCACCAGCACAATGCCAAGCATATCATCGACGCAGCCTTGACATTGATCACAGACAACATGGACAAGCTTACTACCCGGGAGGAGTACGTGGAGCTAGTGGAGAAAGATCCACGACTCGTTGTTGAAATATATGAAGCTTATCTCTCCAAACAGGTCAATACTGCTGCCCAGAAAGATTCTTCCCGGAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

244

Amino Acids

27.47

Weight (kDa)

4.75

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
Acc16I	TGCGCA	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	326
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	42, 177, 222
AclWI	GGATC	2 cut(s)	30, 638
AcuI	CTGAAG	1 cut(s)	116
AcvI	CACGTG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	386, 623
AfeI	AGCGCT	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	165, 277, 409
AgsI	TTSAA	1 cut(s)	662
AjnI	CCWGG	2 cut(s)	18, 450
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	94, 392, 499, 604, 631, 674
AluI	AGCT	6 cut(s)	94, 392, 499, 604, 631, 674
Alw26I	GTCTC	2 cut(s)	74, 174
AlwI	GGATC	2 cut(s)	30, 638
Ama87I	CYCGRG	1 cut(s)	612
Aor51HI	AGCGCT	1 cut(s)	163
AoxI	GGCC	5 cut(s)	72, 120, 246, 255, 417
ApeKI	GCWGC	3 cut(s)	457, 569, 701
AspLEI	GCGC	3 cut(s)	102, 164, 538
AspS9I	GGNCC	2 cut(s)	147, 247
AsuC2I	CCSGG	3 cut(s)	613, 614, 721
AsuHPI	GGTGA	2 cut(s)	164, 277
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	232
BbrPI	CACGTG	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	469, 581, 688
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	3 cut(s)	224, 242, 255
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	2 cut(s)	20, 452
BciVI	GTATCC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	3 cut(s)	613, 614, 721
BcoDI	GTCTC	2 cut(s)	74, 174
BfaI	CTAG	2 cut(s)	165, 632
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	208
BglI	GCCNNNNNGGC	3 cut(s)	245, 254, 324
BisI	GCNGC	4 cut(s)	42, 458, 570, 702
BlsI	GCNGC	4 cut(s)	43, 459, 571, 703
Bme1390I	CCNGG	5 cut(s)	20, 452, 613, 614, 721
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	2 cut(s)	147, 247
BmiI	GGNNCC	3 cut(s)	149, 229, 328
BmrFI	CCNGG	5 cut(s)	20, 452, 613, 614, 721
BmsI	GCATC	3 cut(s)	28, 346, 469
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 259, 291
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	4 cut(s)	101, 122, 317, 449
BpuMI	CCSGG	3 cut(s)	613, 614, 721
BsaAI	YACGTR	2 cut(s)	51, 625
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	74, 174
BsaJI	CCNNGG	3 cut(s)	123, 210, 612
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 277, 409
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	20, 452
BseDI	CCNNGG	3 cut(s)	123, 210, 612
BseLI	CCNNNNNNNGG	3 cut(s)	165, 277, 409
BseMII	CTCAG	2 cut(s)	311, 384
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	3 cut(s)	83, 104, 632
BseXI	GCAGC	3 cut(s)	469, 581, 688
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	5 cut(s)	74, 122, 248, 257, 419
BshNI	GGYRCC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	6 cut(s)	45, 225, 245, 278, 613, 721
BslFI	GGGAC	2 cut(s)	133, 521
BslI	CCNNNNNNNGG	3 cut(s)	165, 277, 409
BsmAI	GTCTC	2 cut(s)	74, 174
BsmFI	GGGAC	2 cut(s)	133, 521
BsnI	GGCC	5 cut(s)	74, 122, 248, 257, 419
Bso31I	GGTCTC	2 cut(s)	74, 174
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	22, 105, 582, 643
BspACI	CCGC	3 cut(s)	42, 177, 222
BspANI	GGCC	5 cut(s)	74, 122, 248, 257, 419
BspCNI	CTCAG	2 cut(s)	312, 385
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	149, 229, 328
BspMI	ACCTGC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	30, 638
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	2 cut(s)	74, 174
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	123, 210, 612
BssMI	GATC	4 cut(s)	22, 105, 582, 643
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	20, 452
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	15, 60
BstAUI	TGTACA	1 cut(s)	384
BstBAI	YACGTR	2 cut(s)	51, 625
BstC8I	GCNNGC	2 cut(s)	46, 421
BstDEI	CTNAG	2 cut(s)	320, 393
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	102, 164, 538
BstKTI	GATC	4 cut(s)	25, 108, 585, 646
BstMAI	GTCTC	2 cut(s)	74, 174
BstMBI	GATC	4 cut(s)	22, 105, 582, 643
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 60, 128, 236, 245, 254, 324
BstNI	CCWGG	2 cut(s)	20, 452
BstSCI	CCNGG	5 cut(s)	18, 450, 611, 612, 719
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	469, 581, 688
BstX2I	RGATCY	2 cut(s)	22, 643
BstYI	RGATCY	2 cut(s)	22, 643
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	5 cut(s)	74, 122, 248, 257, 419
BtgZI	GCGATG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	435
Cac8I	GCNNGC	2 cut(s)	46, 421
CfoI	GCGC	3 cut(s)	102, 164, 538
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	147, 247
Cfr9I	CCCGGG	1 cut(s)	612
CseI	GACGC	1 cut(s)	575
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	385, 622
CviAII	CATG	2 cut(s)	292, 595
CviQI	GTAC	2 cut(s)	385, 622
DdeI	CTNAG	2 cut(s)	320, 393
DpnI	GATC	4 cut(s)	24, 107, 584, 645
DpnII	GATC	4 cut(s)	22, 105, 582, 643
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	2 cut(s)	74, 174
Eco47I	GGWCC	1 cut(s)	147
Eco47III	AGCGCT	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	116
Eco72I	CACGTG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	612
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	18, 450
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	295, 598
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	133, 521
FatI	CATG	2 cut(s)	291, 594
FauI	CCCGC	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	42, 458, 570, 702
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	42, 458, 570, 702
FspBI	CTAG	2 cut(s)	165, 632
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	3 cut(s)	101, 163, 537
GluI	GCNGC	4 cut(s)	42, 458, 570, 702
GsaI	CCCAGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	74, 122, 248, 257, 419
HapII	CCGG	6 cut(s)	45, 225, 245, 278, 613, 721
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	3 cut(s)	102, 164, 538
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	295, 598
Hin6I	GCGC	3 cut(s)	100, 162, 536
HinP1I	GCGC	3 cut(s)	100, 162, 536
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	2 cut(s)	602, 672
HinfI	GANTC	2 cut(s)	651, 713
HpaII	CCGG	6 cut(s)	45, 225, 245, 278, 613, 721
HphI	GGTGA	2 cut(s)	164, 277
Hpy166II	GTNNAC	2 cut(s)	376, 387
Hpy188I	TCNGA	3 cut(s)	190, 211, 287
Hpy8I	GTNNAC	2 cut(s)	376, 387
Hpy99I	CGWCG	5 cut(s)	35, 113, 194, 197, 569
HpyAV	CCTTC	3 cut(s)	142, 193, 371
HpyCH4IV	ACGT	4 cut(s)	50, 192, 368, 624
HpyCH4V	TGCA	3 cut(s)	9, 54, 457
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 60, 128, 236, 245, 254, 324
HpyF3I	CTNAG	2 cut(s)	320, 393
HpySE526I	ACGT	4 cut(s)	50, 192, 368, 624
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	295, 598
HspAI	GCGC	3 cut(s)	100, 162, 536
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	22, 105, 582, 643
LmnI	GCTCC	3 cut(s)	91, 227, 628
Lsp1109I	GCAGC	3 cut(s)	469, 581, 688
LweI	GCATC	3 cut(s)	28, 346, 469
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	2 cut(s)	165, 632
MaeII	ACGT	4 cut(s)	50, 192, 368, 624
MalI	GATC	4 cut(s)	24, 107, 584, 645
MboI	GATC	4 cut(s)	22, 105, 582, 643
MboII	GAAGA	4 cut(s)	47, 98, 323, 708
MflI	RGATCY	2 cut(s)	22, 643
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	2 cut(s)	502, 511
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	6 cut(s)	45, 225, 245, 278, 613, 721
MspR9I	CCNGG	5 cut(s)	20, 452, 613, 614, 721
MvaI	CCWGG	2 cut(s)	20, 452
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	7 cut(s)	15, 60, 128, 236, 245, 254, 324
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	3 cut(s)	613, 614, 721
NdeII	GATC	4 cut(s)	22, 105, 582, 643
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	295, 598
NlaIV	GGNNCC	3 cut(s)	149, 229, 328
NsbI	TGCGCA	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	719
PkrI	GCNGC	4 cut(s)	43, 459, 571, 703
PleI	GAGTC	1 cut(s)	645
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	645
Ppu21I	YACGTR	2 cut(s)	51, 625
Psp6I	CCWGG	2 cut(s)	18, 450
PspCI	CACGTG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	18, 450
PspN4I	GGNNCC	3 cut(s)	149, 229, 328
PspPI	GGNCC	2 cut(s)	147, 247
PsuI	RGATCY	2 cut(s)	22, 643
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	386, 623
RsaNI	GTAC	2 cut(s)	385, 622
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	4 cut(s)	42, 458, 570, 702
Sau3AI	GATC	4 cut(s)	22, 105, 582, 643
Sau96I	GGNCC	2 cut(s)	147, 247
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	5 cut(s)	20, 452, 613, 614, 721
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	28, 346, 469
SfcI	CTRYAG	1 cut(s)	234
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
SinI	GGWCC	1 cut(s)	147
SmaI	CCCGGG	1 cut(s)	614
SmlI	CTYRAG	4 cut(s)	116, 137, 296, 464
SmoI	CTYRAG	4 cut(s)	116, 137, 296, 464
Sse9I	AATT	2 cut(s)	502, 511
SsiI	CCGC	3 cut(s)	42, 177, 222
SspMI	CTAG	2 cut(s)	165, 632
StyD4I	CCNGG	5 cut(s)	18, 450, 611, 612, 719
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	4 cut(s)	53, 195, 371, 627
TaqI	TCGA	2 cut(s)	108, 564
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	502, 511
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	3 cut(s)	457, 569, 701
TspDTI	ATGAA	3 cut(s)	17, 536, 684
TspMI	CCCGGG	1 cut(s)	612
VpaK11BI	GGWCC	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	407
XmaI	CCCGGG	1 cut(s)	612
XspI	CTAG	2 cut(s)	165, 632
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.