Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

22704370 .. 22707227

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAATGAAATTACATGTTGAAATTTCTTCTGTGTTTTTGTTTGTCTTCGAACACCGCAACATGAAGTGCATATCTTGCGAGGGCAAATACGACGGAGATGCCGGCGCCTGCAGGCAGTGCTACGAGGACCTCAAGGCTAAGGTCGCTTTTCTCGCGATGTCCAATCGGTATCCCTTAACCTTCTGCACCGACGTCGTTCTGTTAGCCTCGGACAACGGCCATCCCGAGGGCCCTGCAGGAGGTATGGCCCATGAGGCCGTTTTGGCAAGTCGTTCTCCGGTGTTCAAAGCCCTCCTTCATAACGAGACAAAAGAAATCCATATCAACGAATTGTGGCCCCAAGAACTTGGTGCCTTTATCAACTACCTCTACACGGCCGAGATATGCCTTGACCAGGATTTGGCCCGTAAACTCCTTGTAGTGGCTGAAAAGTACCAGGTGCATCATCTCAAAGACTTGTGCCAGAAGTTCTTGGTGTCCAACCTCAACCGGGACAATTCACTTGCGACCTACACCTTCGGCCACCATCATAATGACAAGCAGATCATCGACGCAGCCTTGATGTTGATCACAAACAACATCGAAAAGCTTGCTTCAAGCGATGAGTATGCGGAGCTAAAGAGAAGTCATCCGCAACTTGTAATCGAAATATATGAACATATTGTTGCATCCTCTACTGCTCCTTCGGTACAAGCTTTGCTTTTAGAGGAGTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BACK BTB Kelch_1

Protein Analysis

241

Amino Acids

27.06

Weight (kDa)

5.78

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccB1I	GGYRCC	2 cut(s)	107, 353
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	58, 614, 635
AcoI	YGGCCR	3 cut(s)	220, 378, 523
AcsI	RAATTY	1 cut(s)	24
AcyI	GRCGYC	2 cut(s)	108, 195
AfaI	GTAC	2 cut(s)	437, 693
AfiI	CCNNNNNNNGG	7 cut(s)	229, 242, 376, 397, 403, 424, 493
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	23, 289, 600
AjnI	CCWGG	2 cut(s)	396, 438
AluBI	AGCT	3 cut(s)	592, 619, 698
AluI	AGCT	3 cut(s)	592, 619, 698
Alw26I	GTCTC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	8 cut(s)	220, 232, 249, 258, 338, 378, 405, 523
ApaI	GGGCCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	6 cut(s)	130, 232, 233, 250, 339, 406
AsuC2I	CCSGG	1 cut(s)	494
AsuII	TTCGAA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	236
BanI	GGYRCC	2 cut(s)	107, 353
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	2 cut(s)	231, 537
BceAI	ACGGC	3 cut(s)	235, 245, 393
BciT130I	CCWGG	2 cut(s)	398, 440
BciVI	GTATCC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	302
BfmI	CTRYAG	2 cut(s)	112, 237
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	183
BglI	GCCNNNNNGGC	2 cut(s)	257, 266
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	3 cut(s)	398, 440, 494
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	6 cut(s)	130, 232, 233, 250, 339, 406
BmiI	GGNNCC	4 cut(s)	109, 234, 341, 355
BmrFI	CCNGG	3 cut(s)	398, 440, 494
BmsI	GCATC	3 cut(s)	91, 454, 680
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	569
BsaHI	GRCGYC	2 cut(s)	108, 195
BsaJI	CCNNGG	2 cut(s)	210, 228
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	7 cut(s)	229, 242, 376, 397, 403, 424, 493
Bse118I	RCCGGY	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	398, 440
BseDI	CCNNGG	2 cut(s)	210, 228
BseGI	GGATG	3 cut(s)	223, 631, 671
BseJI	GATNNNNATC	1 cut(s)	569
BseLI	CCNNNNNNNGG	7 cut(s)	229, 242, 376, 397, 403, 424, 493
BseSI	GKGCMC	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	569
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	8 cut(s)	222, 234, 251, 260, 340, 380, 407, 525
BshNI	GGYRCC	2 cut(s)	107, 353
BsiEI	CGRYCG	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	105, 281, 493
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	7 cut(s)	229, 242, 376, 397, 403, 424, 493
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	8 cut(s)	222, 234, 251, 260, 340, 380, 407, 525
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	546, 570
Bsp68I	TCGCGA	1 cut(s)	158
BspACI	CCGC	3 cut(s)	58, 614, 635
BspANI	GGCC	8 cut(s)	222, 234, 251, 260, 340, 380, 407, 525
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	109, 234, 341, 355
BspMAI	CTGCAG	2 cut(s)	116, 241
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	107, 353
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	210, 228
BssMI	GATC	2 cut(s)	546, 570
BssNI	GRCGYC	2 cut(s)	108, 195
Bst2UI	CCWGG	2 cut(s)	398, 440
BstACI	GRCGYC	2 cut(s)	108, 195
BstAPI	GCANNNNNTGC	2 cut(s)	78, 120
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	4 cut(s)	106, 112, 116, 594
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	2 cut(s)	240, 395
BstF5I	GGATG	3 cut(s)	223, 631, 671
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	549, 573
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	2 cut(s)	546, 570
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 120, 146, 155, 257, 266
BstNI	CCWGG	2 cut(s)	398, 440
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	396, 438, 492
BstSFI	CTRYAG	2 cut(s)	112, 237
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	569
BstV2I	GAAGAC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	8 cut(s)	222, 234, 251, 260, 340, 380, 407, 525
BtgZI	GCGATG	2 cut(s)	173, 618
BtsCI	GGATG	3 cut(s)	223, 631, 671
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
BtuMI	TCGCGA	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	106, 112, 116, 594
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	6 cut(s)	130, 232, 233, 250, 339, 406
CseI	GACGC	1 cut(s)	563
CsiI	ACCWGGT	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	436, 692
CviAII	CATG	3 cut(s)	17, 64, 254
CviQI	GTAC	2 cut(s)	436, 692
DdeI	CTNAG	1 cut(s)	141
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	2 cut(s)	548, 572
DpnII	GATC	2 cut(s)	546, 570
EaeI	YGGCCR	3 cut(s)	220, 378, 523
EagI	CGGCCG	1 cut(s)	378
EclXI	CGGCCG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	2 cut(s)	240, 395
EcoO109I	RGGNCCY	3 cut(s)	130, 232, 233
EcoRII	CCWGG	2 cut(s)	396, 438
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	3 cut(s)	20, 67, 257
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 687, 719
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	16, 63, 253
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	3 cut(s)	210, 618, 658
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	558
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	558
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	8 cut(s)	222, 234, 251, 260, 340, 380, 407, 525
HapII	CCGG	3 cut(s)	105, 281, 493
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	108, 195
Hin1II	CATG	3 cut(s)	20, 67, 257
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	590, 696
HpaII	CCGG	3 cut(s)	105, 281, 493
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	157, 227
Hpy8I	GTNNAC	1 cut(s)	413
Hpy99I	CGWCG	4 cut(s)	98, 197, 200, 557
HpyAV	CCTTC	4 cut(s)	193, 308, 529, 696
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	72, 114, 189, 239, 445, 671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 120, 146, 155, 257, 266
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	108, 195
Hsp92II	CATG	3 cut(s)	20, 67, 257
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	546, 570
LmnI	GCTCC	2 cut(s)	616, 688
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	3 cut(s)	91, 454, 680
MabI	ACCWGGT	1 cut(s)	438
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	714
MalI	GATC	2 cut(s)	548, 572
MboI	GATC	2 cut(s)	546, 570
MboII	GAAGA	2 cut(s)	21, 40
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	4 cut(s)	11, 24, 332, 499
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	3 cut(s)	105, 281, 493
MspR9I	CCNGG	3 cut(s)	398, 440, 494
MvaI	CCWGG	2 cut(s)	398, 440
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	6 cut(s)	78, 120, 146, 155, 257, 266
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	2 cut(s)	546, 570
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	20, 67, 257
NlaIV	GGNNCC	4 cut(s)	109, 234, 341, 355
NmeAIII	GCCGAG	1 cut(s)	406
NruI	TCGCGA	1 cut(s)	158
NspI	RCATGY	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	51
PciI	ACATGT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	559
PluTI	GGCGCC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	130
PscI	ACATGT	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	396, 438
PspGI	CCWGG	2 cut(s)	396, 438
PspN4I	GGNNCC	4 cut(s)	109, 234, 341, 355
PspOMI	GGGCCC	1 cut(s)	232
PspPI	GGNCC	6 cut(s)	130, 232, 233, 250, 339, 406
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	2 cut(s)	116, 241
RruI	TCGCGA	1 cut(s)	158
RsaI	GTAC	2 cut(s)	437, 693
RsaNI	GTAC	2 cut(s)	436, 692
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	2 cut(s)	546, 570
Sau96I	GGNCC	6 cut(s)	130, 232, 233, 250, 339, 406
SbfI	CCTGCAGG	2 cut(s)	116, 241
ScrFI	CCNGG	3 cut(s)	398, 440, 494
SdaI	CCTGCAGG	2 cut(s)	116, 241
SduI	GDGCHC	1 cut(s)	236
SexAI	ACCWGGT	1 cut(s)	438
SfaNI	GCATC	3 cut(s)	91, 454, 680
SfcI	CTRYAG	2 cut(s)	112, 237
SfiI	GGCCNNNNNGGCC	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse8387I	CCTGCAGG	2 cut(s)	116, 241
Sse9I	AATT	4 cut(s)	11, 24, 332, 499
SsiI	CCGC	3 cut(s)	58, 614, 635
SspDI	GGCGCC	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	396, 438, 492
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	51, 552, 585, 648
TasI	AATT	4 cut(s)	11, 24, 332, 499
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	17, 23, 80, 290, 672
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	130
XagI	CCTNNNNNAGG	2 cut(s)	240, 395
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.