Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

22707395 .. 22709254

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G186000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAAATGAAATTACATGTTGTTGAAATTTCTTCTGTGTTTTTGTTTGTCTTCGAACACCGCAACATGAAGTGCACATCTTGCGAGGGCAAATACGACGGAGATGCCGGCGCCTGCAGGCAGTGCTACGAGGACATCAAGGCTAAGGTCGCTTTTCTCACGATTTCCTATGAGTATCCCTTAACCTCCTTCCCTGACGTCGTTCTGTATGGCTCGGACGACGGCCATCCCGACGGCCCTGTAAAAGTTATGGCCCATACGGTCGTTTTGGCAAGCCGTTCTCCGGTGTTCAGAGCCATCCTTGAGAATGAGACAAAAGAAATCCATATCTACGAATTGTGGCCACCCCAAGAATTTTTTGCTTTTGTCAACTACCTCTACACGGCCGAGATATGCCTTGACCAGCAATCGGCCCGTACACTCCTTGTACTGGCTGAAAAGTACCAGGTGCATCATCTCAGAGACTTGTGCCAGAAGTTCTTGGTGTCCAACCTCAACTGTTACAATTCACTTGCGACCTACACCCTCGGCCACCATCATAACGACAAGCAGATCATCGACGCAGCCTTGACGTTCATCACAAACAACATCGAAAAGCTTGCTTCAAGCGATGAGTACGCGGAGCTAAAGAAAAGTCATCCGCAACTTGTAATCGAAATCTATGAACGTCATTTTGCATCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

229

Amino Acids

26.17

Weight (kDa)

5.81

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	1 cut(s)	620
AciI	CCGC	3 cut(s)	61, 620, 641
AcoI	YGGCCR	4 cut(s)	223, 341, 384, 529
AcsI	RAATTY	2 cut(s)	27, 353
AcyI	GRCGYC	2 cut(s)	111, 198
AfaI	GTAC	4 cut(s)	418, 429, 443, 617
AfiI	CCNNNNNNNGG	4 cut(s)	283, 382, 409, 430
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	26, 606
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	2 cut(s)	598, 625
AluI	AGCT	2 cut(s)	598, 625
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	305, 456
Alw44I	GTGCAC	1 cut(s)	73
AoxI	GGCC	7 cut(s)	223, 235, 252, 341, 384, 411, 529
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	27, 353
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	3 cut(s)	236, 253, 412
AsuII	TTCGAA	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	234, 305, 543
BceAI	ACGGC	4 cut(s)	238, 250, 261, 399
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 581, 615
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	305, 456
BfmI	CTRYAG	1 cut(s)	115
BfoI	RGCGCY	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	236, 253, 412
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	94, 460
BpiI	GAAGAC	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	323
BsaHI	GRCGYC	2 cut(s)	111, 198
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 382, 409, 430
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	4 cut(s)	226, 297, 637, 677
BseLI	CCNNNNNNNGG	4 cut(s)	283, 382, 409, 430
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	77
BseX3I	CGGCCG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	620
Bsh1285I	CGRYCG	2 cut(s)	264, 387
BshFI	GGCC	7 cut(s)	225, 237, 254, 343, 386, 413, 531
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	2 cut(s)	264, 387
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	108, 284
BslI	CCNNNNNNNGG	4 cut(s)	283, 382, 409, 430
BsmAI	GTCTC	2 cut(s)	305, 456
BsnI	GGCC	7 cut(s)	225, 237, 254, 343, 386, 413, 531
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	552
BspACI	CCGC	3 cut(s)	61, 620, 641
BspANI	GGCC	7 cut(s)	225, 237, 254, 343, 386, 413, 531
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	1 cut(s)	552
BssNI	GRCGYC	2 cut(s)	111, 198
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	262, 500
BstACI	GRCGYC	2 cut(s)	111, 198
BstAPI	GCANNNNNTGC	2 cut(s)	81, 123
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	5 cut(s)	109, 115, 119, 274, 600
BstDEI	CTNAG	2 cut(s)	144, 458
BstF5I	GGATG	4 cut(s)	226, 297, 637, 677
BstFNI	CGCG	1 cut(s)	620
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	555
BstMAI	GTCTC	2 cut(s)	305, 456
BstMBI	GATC	1 cut(s)	552
BstMCI	CGRYCG	2 cut(s)	264, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 123, 149
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	7 cut(s)	225, 237, 254, 343, 386, 413, 531
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	4 cut(s)	226, 297, 637, 677
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	5 cut(s)	109, 115, 119, 274, 600
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	236, 253, 412
CseI	GACGC	1 cut(s)	569
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	4 cut(s)	417, 428, 442, 616
CviAII	CATG	2 cut(s)	17, 67
CviQI	GTAC	4 cut(s)	417, 428, 442, 616
DdeI	CTNAG	2 cut(s)	144, 458
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
EaeI	YGGCCR	4 cut(s)	223, 341, 384, 529
EagI	CGGCCG	1 cut(s)	384
EclXI	CGGCCG	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	444
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
FaeI	CATG	2 cut(s)	20, 70
FatI	CATG	2 cut(s)	16, 66
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	4 cut(s)	213, 284, 624, 664
Fsp4HI	GCNGC	1 cut(s)	564
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	7 cut(s)	225, 237, 254, 343, 386, 413, 531
HapII	CCGG	2 cut(s)	108, 284
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	111, 198
Hin1II	CATG	2 cut(s)	20, 70
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	596
HpaII	CCGG	2 cut(s)	108, 284
Hpy166II	GTNNAC	3 cut(s)	75, 370, 419
Hpy188I	TCNGA	3 cut(s)	217, 293, 461
Hpy188III	TCNNGA	2 cut(s)	160, 230
Hpy8I	GTNNAC	3 cut(s)	75, 370, 419
Hpy99I	CGWCG	5 cut(s)	101, 203, 224, 236, 563
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	262, 500
HpyCH4IV	ACGT	3 cut(s)	198, 572, 667
HpyCH4V	TGCA	4 cut(s)	75, 117, 451, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 123, 149
HpyF3I	CTNAG	2 cut(s)	144, 458
HpySE526I	ACGT	3 cut(s)	198, 572, 667
Hsp92I	GRCGYC	2 cut(s)	111, 198
Hsp92II	CATG	2 cut(s)	20, 70
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	552
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	2 cut(s)	94, 460
MabI	ACCWGGT	1 cut(s)	444
MaeII	ACGT	3 cut(s)	198, 572, 667
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MboII	GAAGA	2 cut(s)	24, 43
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	343
MluCI	AATT	5 cut(s)	11, 27, 335, 353, 505
MluNI	TGGCCA	1 cut(s)	343
Mly113I	GGCGCC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	6 cut(s)	79, 124, 196, 386, 503, 536
Mox20I	TGGCCA	1 cut(s)	343
MroNI	GCCGGC	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	682
Msp20I	TGGCCA	1 cut(s)	343
MspI	CCGG	2 cut(s)	108, 284
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	3 cut(s)	81, 123, 149
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	1 cut(s)	111
NdeII	GATC	1 cut(s)	552
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	20, 70
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	2 cut(s)	412, 507
NspI	RCATGY	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	54
PciI	ACATGT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	114
PscI	ACATGT	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	236, 253, 412
PstI	CTGCAG	1 cut(s)	119
RsaI	GTAC	4 cut(s)	418, 429, 443, 617
RsaNI	GTAC	4 cut(s)	417, 428, 442, 616
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	1 cut(s)	552
Sau96I	GGNCC	3 cut(s)	236, 253, 412
SbfI	CCTGCAGG	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	446
SdaI	CCTGCAGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	77
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	94, 460
SfcI	CTRYAG	1 cut(s)	115
SfoI	GGCGCC	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse8387I	CCTGCAGG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	11, 27, 335, 353, 505
SsiI	CCGC	3 cut(s)	61, 620, 641
SspDI	GGCGCC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	262, 500
TaiI	ACGT	3 cut(s)	201, 575, 670
TaqI	TCGA	4 cut(s)	54, 558, 591, 654
TasI	AATT	5 cut(s)	11, 27, 335, 353, 505
TatI	WGTACW	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	17, 23, 83, 565, 678
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	73
XapI	RAATTY	2 cut(s)	27, 353
XceI	RCATGY	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.