Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40652755 .. 40654198

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G488300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGTAGGTGCATGTCTTGCGAGGCCATATCCGAGGGATATGATGCCGCCACTTGCAAGCAGCGCCACGAGGTCCTCAAGGCCAAGGTCGCTTTTCTCACGACGTCCCAGCCGGCTTCCTTCCCCGACGTCCTTCTGTTTGCCTCAGACGATGGCTCTGCCGACACCGCCGAGCCCCTTGTACCCGTTCCGGCCCATAAAGCCGTTTTGGTGAGCCGTTCTCCAGTGTTCAAAGCCATGCTTGAGAATGAGATGGAAGAAAGTCAGAGCGGCACCATCAAGATCAGCGATGTGTCCTACGACGCCCTTTGTGCTTTTGTCAACTACCTGTACACAGCTGAGATATGCCTTGACCAGCAATTGGCCTATTATCTGCTTGTAATGGCTGAAAAATACCAGGTACAGCATCTCAAAGACTACTGCCAGAAATTCTTCGTGTCCAACCTCAACTGGGACAATGTACTTCCAACCTACACCTTTGCGCACCAGCATAACTCTAAGCCGATCATCGACGTGGCCTTGAGGGTGATCACAGCCAACATGGACAAGCTCACTGCCCGGGAGGAGTACGCGGAGCTGAAGGAGAGACATCCAGGACTTGTATTGGAAATCTATGAAGCTCATTTCAGTCGTGCAGCAGCAGTCCGTGATCAATCTTCATTTTCCTGTGTACTCAGGGCTTCTTCTAGGTCTCGTGGTTTCCCTATTTTGCGACGACAAAGTGGAAACCAACCCCAAGTTTCAACAGCTTCTTCAACGGGCTTGATTGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

259

Amino Acids

28.77

Weight (kDa)

5.98

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	107, 132
Acc16I	TGCGCA	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	572
AciI	CCGC	4 cut(s)	48, 168, 270, 572
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	3 cut(s)	104, 129, 303
AfaI	GTAC	6 cut(s)	183, 332, 402, 462, 569, 672
AfiI	CCNNNNNNNGG	2 cut(s)	361, 451
AgsI	TTSAA	3 cut(s)	232, 744, 756
AjiI	CACGTC	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	396, 592
AluBI	AGCT	5 cut(s)	338, 550, 577, 620, 749
AluI	AGCT	5 cut(s)	338, 550, 577, 620, 749
Alw26I	GTCTC	2 cut(s)	580, 696
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	5 cut(s)	24, 81, 192, 363, 516
ApeKI	GCWGC	3 cut(s)	61, 635, 638
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	2 cut(s)	66, 484
AspS9I	GGNCC	2 cut(s)	73, 193
AsuC2I	CCSGG	2 cut(s)	559, 560
AsuHPI	GGTGA	2 cut(s)	223, 538
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	2 cut(s)	68, 693
BbvI	GCAGC	3 cut(s)	73, 647, 650
BccI	CCATC	3 cut(s)	146, 247, 284
BceAI	ACGGC	2 cut(s)	188, 201
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	398, 594
BclI	TGATCA	2 cut(s)	528, 649
BcnI	CCSGG	2 cut(s)	559, 560
BcoDI	GTCTC	2 cut(s)	580, 696
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	5 cut(s)	48, 62, 271, 636, 639
BlsI	GCNGC	5 cut(s)	49, 63, 272, 637, 640
Bme1390I	CCNGG	4 cut(s)	398, 559, 560, 594
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	73, 193
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	4 cut(s)	398, 559, 560, 594
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	34, 415
BmuI	ACTGGG	1 cut(s)	460
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	62, 263, 541
BpuMI	CCSGG	2 cut(s)	559, 560
BsaHI	GRCGYC	3 cut(s)	104, 129, 303
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	33, 84, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 451
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	224, 455
BseBI	CCWGG	2 cut(s)	398, 594
BseDI	CCNNGG	3 cut(s)	33, 84, 558
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	361, 451
BseMII	CTCAG	3 cut(s)	159, 330, 688
BseNI	ACTGG	2 cut(s)	224, 455
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	73, 647, 650
BseYI	CCCAGC	1 cut(s)	108
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	5 cut(s)	26, 83, 194, 365, 518
BshNI	GGYRCC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	113, 191, 559
BslFI	GGGAC	2 cut(s)	91, 467
BslI	CCNNNNNNNGG	2 cut(s)	361, 451
BsmAI	GTCTC	2 cut(s)	580, 696
BsmFI	GGGAC	2 cut(s)	91, 467
BsnI	GGCC	5 cut(s)	26, 83, 194, 365, 518
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	282, 504, 528, 649
BspACI	CCGC	4 cut(s)	48, 168, 270, 572
BspANI	GGCC	5 cut(s)	26, 83, 194, 365, 518
BspCNI	CTCAG	3 cut(s)	158, 331, 687
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	696
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	224, 455
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	33, 84, 558
BssMI	GATC	4 cut(s)	282, 504, 528, 649
BssNI	GRCGYC	3 cut(s)	104, 129, 303
BssSI	CACGAG	2 cut(s)	68, 693
BssT1I	CCWWGG	1 cut(s)	84
Bst2BI	CACGAG	2 cut(s)	68, 693
Bst2UI	CCWGG	2 cut(s)	398, 594
BstACI	GRCGYC	3 cut(s)	104, 129, 303
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	59, 114
BstDEI	CTNAG	4 cut(s)	145, 339, 498, 674
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 484
BstKTI	GATC	4 cut(s)	285, 507, 531, 652
BstMAI	GTCTC	2 cut(s)	580, 696
BstMBI	GATC	4 cut(s)	282, 504, 528, 649
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 63, 89, 167, 200, 311
BstNI	CCWGG	2 cut(s)	398, 594
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	396, 557, 558, 592
BstSFI	CTRYAG	1 cut(s)	773
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	3 cut(s)	73, 647, 650
BsuRI	GGCC	5 cut(s)	26, 83, 194, 365, 518
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	231, 552
Cac8I	GCNNGC	2 cut(s)	59, 114
CfoI	GCGC	2 cut(s)	66, 484
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	73, 193
Cfr9I	CCCGGG	1 cut(s)	558
CseI	GACGC	1 cut(s)	311
CsiI	ACCWGGT	1 cut(s)	396
Csp6I	GTAC	6 cut(s)	182, 331, 401, 461, 568, 671
CviAII	CATG	3 cut(s)	13, 238, 541
CviQI	GTAC	6 cut(s)	182, 331, 401, 461, 568, 671
DdeI	CTNAG	4 cut(s)	145, 339, 498, 674
DpnI	GATC	4 cut(s)	284, 506, 530, 651
DpnII	GATC	4 cut(s)	282, 504, 528, 649
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	396, 592
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	16, 241, 544
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	2 cut(s)	91, 467
FatI	CATG	3 cut(s)	12, 237, 540
FbaI	TGATCA	2 cut(s)	528, 649
Fnu4HI	GCNGC	5 cut(s)	48, 62, 271, 636, 639
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	48, 62, 271, 636, 639
FspBI	CTAG	1 cut(s)	687
FspI	TGCGCA	1 cut(s)	483
GlaI	GCGC	2 cut(s)	65, 483
GluI	GCNGC	5 cut(s)	48, 62, 271, 636, 639
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	5 cut(s)	26, 83, 194, 365, 518
HapII	CCGG	3 cut(s)	113, 191, 559
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	66, 484
Hin1I	GRCGYC	3 cut(s)	104, 129, 303
Hin1II	CATG	3 cut(s)	16, 241, 544
Hin6I	GCGC	2 cut(s)	64, 482
HinP1I	GCGC	2 cut(s)	64, 482
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HpaII	CCGG	3 cut(s)	113, 191, 559
HphI	GGTGA	2 cut(s)	223, 538
Hpy166II	GTNNAC	3 cut(s)	322, 333, 671
Hpy188I	TCNGA	3 cut(s)	34, 148, 267
Hpy188III	TCNNGA	2 cut(s)	100, 280
Hpy8I	GTNNAC	3 cut(s)	322, 333, 671
Hpy99I	CGWCG	5 cut(s)	106, 131, 305, 515, 717
HpyAV	CCTTC	3 cut(s)	130, 143, 574
HpyCH4IV	ACGT	3 cut(s)	104, 129, 513
HpyCH4V	TGCA	3 cut(s)	12, 57, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 63, 89, 167, 200, 311
HpyF3I	CTNAG	4 cut(s)	145, 339, 498, 674
HpySE526I	ACGT	3 cut(s)	104, 129, 513
Hsp92I	GRCGYC	3 cut(s)	104, 129, 303
Hsp92II	CATG	3 cut(s)	16, 241, 544
HspAI	GCGC	2 cut(s)	64, 482
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Ksp22I	TGATCA	2 cut(s)	528, 649
Kzo9I	GATC	4 cut(s)	282, 504, 528, 649
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	3 cut(s)	73, 647, 650
LweI	GCATC	2 cut(s)	34, 415
MabI	ACCWGGT	1 cut(s)	396
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	3 cut(s)	104, 129, 513
MalI	GATC	4 cut(s)	284, 506, 530, 651
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	4 cut(s)	282, 504, 528, 649
MboII	GAAGA	5 cut(s)	269, 424, 648, 675, 744
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	359, 428
MmeI	TCCRAC	2 cut(s)	465, 491
MnlI	CCTC	8 cut(s)	16, 28, 64, 86, 154, 455, 516, 556
MroNI	GCCGGC	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	3 cut(s)	113, 191, 559
MspR9I	CCNGG	4 cut(s)	398, 559, 560, 594
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	2 cut(s)	398, 594
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	6 cut(s)	18, 63, 89, 167, 200, 311
NaeI	GCCGGC	1 cut(s)	114
NciI	CCSGG	2 cut(s)	559, 560
NdeII	GATC	4 cut(s)	282, 504, 528, 649
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	16, 241, 544
NlaIV	GGNNCC	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	196
NsbI	TGCGCA	1 cut(s)	483
NspI	RCATGY	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	5 cut(s)	49, 63, 272, 637, 640
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	396, 592
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	2 cut(s)	396, 592
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	73, 193
PspPPI	RGGWCCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	6 cut(s)	183, 332, 402, 462, 569, 672
RsaNI	GTAC	6 cut(s)	182, 331, 401, 461, 568, 671
RseI	CAYNNNNRTG	1 cut(s)	512
SatI	GCNGC	5 cut(s)	48, 62, 271, 636, 639
Sau3AI	GATC	4 cut(s)	282, 504, 528, 649
Sau96I	GGNCC	2 cut(s)	73, 193
ScrFI	CCNGG	4 cut(s)	398, 559, 560, 594
SduI	GDGCHC	1 cut(s)	177
SexAI	ACCWGGT	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	34, 415
SfcI	CTRYAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	73
SmaI	CCCGGG	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	3 cut(s)	77, 242, 520
SmoI	CTYRAG	3 cut(s)	77, 242, 520
Sse9I	AATT	2 cut(s)	359, 428
SsiI	CCGC	4 cut(s)	48, 168, 270, 572
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	4 cut(s)	396, 557, 558, 592
StyI	CCWWGG	1 cut(s)	84
TaiI	ACGT	3 cut(s)	107, 132, 516
TaqI	TCGA	1 cut(s)	510
TasI	AATT	2 cut(s)	359, 428
TatI	WGTACW	3 cut(s)	330, 460, 670
TauI	GCSGC	2 cut(s)	50, 273
TscAI	CASTG	2 cut(s)	231, 559
TseI	GCWGC	3 cut(s)	61, 635, 638
TspDTI	ATGAA	2 cut(s)	630, 648
TspGWI	ACGGA	1 cut(s)	635
TspMI	CCCGGG	1 cut(s)	558
TspRI	CASTG	2 cut(s)	231, 559
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	16
XmaI	CCCGGG	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	687
ZraI	GACGTC	2 cut(s)	105, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.