Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

8130989 .. 8133346

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCAATCGGAATAATGTCACGATATTGCAAATCTTGCGAAGGTGGTTTCGACAGACATGGCGGCGGCATGTACTGCAAGGGGTGCTACTTGGAGGCCGACAAGATCAAGGTGCAGTTGATGGGTGAGAACGAAGAGCTCAAGGATAAGATTGAATTTCTCAAGTTGTGCTCGCCGTCGCCGACCACTTCTGCTACGTCACTGGCAGCTTCCTTCTCCGACGTCGTTCTGATTGCCTTGGACTCTGACAACTCCCCTTCTGAGCCGCCCGTTCAGGCTCATAAGGCCGTTCTGGTGAACCGCTCTCCGGTGTTCAGAGCCATGTTTGAGAATGAAGAGATGGAAGAAAGTCGGAGTGGTACCGTTAACATTGCCGATGTGCGCTACGATGCCCTACAAGCTTTTGTCAACTACCTCTACACTGCTGAGACATGCCTTAACCAGAACTTGGCATGCGACCTCCTAATACTGGCTGAAAAATACCAAGTGCAGCATCTCAAGCACTACTGCCAGAAATTCTTGGTGTCCAAGCTCAACTGGGACAATGCGCTTACGACCTACACCTTCGCCTGGGGCCATAACGCGGAGGACGTCATGGACGCGGCCTTGGAAGTGATCACCGATAACATGGACAAGCTCACTGCCCGGTTGGAGTACGACGATTTGGTGAAGAAAGATCCCCAACTCGTCATCAAAATCTACGAAACTTATCTCTCCAAACAGGTTAATACTGATAGGGAGGGAGATGGGGAGAGAGATTCTTCAAGTTGCAAAGGGAGTGGCTCGTTGAACGTGATTGCCTTGGGGGGACGCTCGGACGACGGGAGTAGCTCGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

280

Amino Acids

30.91

Weight (kDa)

4.81

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	225, 594
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccBSI	CCGCTC	1 cut(s)	303
AccII	CGCG	2 cut(s)	584, 602
AciI	CCGC	6 cut(s)	63, 66, 266, 301, 584, 602
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	2 cut(s)	155, 515
AcyI	GRCGYC	2 cut(s)	222, 591
AfaI	GTAC	3 cut(s)	74, 361, 656
AfiI	CCNNNNNNNGG	5 cut(s)	307, 448, 469, 570, 583
AgsI	TTSAA	3 cut(s)	155, 765, 790
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	6 cut(s)	139, 209, 401, 532, 637, 831
AluI	AGCT	6 cut(s)	139, 209, 401, 532, 637, 831
Alw21I	GWGCWC	2 cut(s)	141, 173
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	832
AoxI	GGCC	4 cut(s)	96, 285, 574, 603
ApeKI	GCWGC	2 cut(s)	206, 490
ApoI	RAATTY	2 cut(s)	155, 515
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	384, 550
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	4 cut(s)	137, 307, 610, 679
AvaI	CYCGRG	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	141, 173
BbvI	GCAGC	2 cut(s)	218, 502
BccI	CCATC	3 cut(s)	115, 334, 740
BceAI	ACGGC	2 cut(s)	160, 272
BciT130I	CCWGG	1 cut(s)	571
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	422
BisI	GCNGC	6 cut(s)	64, 67, 207, 266, 491, 603
BlsI	GCNGC	6 cut(s)	65, 68, 208, 267, 492, 604
Bme1390I	CCNGG	2 cut(s)	571, 646
BmeT110I	CYCGRG	1 cut(s)	832
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	361, 575
BmrFI	CCNGG	2 cut(s)	571, 646
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	379, 502
BmuI	ACTGGG	1 cut(s)	547
BpuEI	CTTGAG	3 cut(s)	125, 146, 482
BpuMI	CCSGG	1 cut(s)	646
BsaHI	GRCGYC	2 cut(s)	222, 591
BsaJI	CCNNGG	4 cut(s)	237, 570, 606, 801
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	5 cut(s)	307, 448, 469, 570, 583
Bse1I	ACTGG	3 cut(s)	207, 474, 542
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	4 cut(s)	237, 570, 606, 801
BseLI	CCNNNNNNNGG	5 cut(s)	307, 448, 469, 570, 583
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	252, 417
BseNI	ACTGG	3 cut(s)	207, 474, 542
BseXI	GCAGC	2 cut(s)	218, 502
BsgI	GTGCAG	2 cut(s)	134, 509
Bsh1236I	CGCG	2 cut(s)	584, 602
BshFI	GGCC	4 cut(s)	98, 287, 576, 605
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	141, 173
BsiHKCI	CYCGRG	1 cut(s)	832
BsiSI	CCGG	2 cut(s)	308, 646
BslFI	GGGAC	2 cut(s)	554, 822
BslI	CCNNNNNNNGG	5 cut(s)	307, 448, 469, 570, 583
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	554, 822
BsnI	GGCC	4 cut(s)	98, 287, 576, 605
BsoBI	CYCGRG	1 cut(s)	832
Bsp1286I	GDGCHC	2 cut(s)	141, 173
Bsp143I	GATC	3 cut(s)	105, 615, 676
BspACI	CCGC	6 cut(s)	63, 66, 266, 301, 584, 602
BspANI	GGCC	4 cut(s)	98, 287, 576, 605
BspCNI	CTCAG	2 cut(s)	253, 418
BspFNI	CGCG	2 cut(s)	584, 602
BspLI	GGNNCC	2 cut(s)	361, 575
BspPI	GGATC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	207, 474, 542
BssECI	CCNNGG	4 cut(s)	237, 570, 606, 801
BssMI	GATC	3 cut(s)	105, 615, 676
BssNI	GRCGYC	2 cut(s)	222, 591
BssT1I	CCWWGG	3 cut(s)	237, 606, 801
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	129, 330
BstACI	GRCGYC	2 cut(s)	222, 591
BstAPI	GCANNNNNTGC	3 cut(s)	36, 75, 84
BstC8I	GCNNGC	2 cut(s)	173, 454
BstDEI	CTNAG	2 cut(s)	261, 426
BstFNI	CGCG	2 cut(s)	584, 602
BstHHI	GCGC	2 cut(s)	384, 550
BstKTI	GATC	3 cut(s)	108, 618, 679
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	105, 615, 676
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 75, 84, 284, 398, 499
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	3 cut(s)	73, 435, 456
BstSCI	CCNGG	2 cut(s)	569, 644
BstUI	CGCG	2 cut(s)	584, 602
BstV1I	GCAGC	2 cut(s)	218, 502
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	98, 287, 576, 605
BtsI	GCAGTG	2 cut(s)	420, 639
BtsIMutI	CAGTG	3 cut(s)	200, 420, 639
Cac8I	GCNNGC	2 cut(s)	173, 454
CfoI	GCGC	2 cut(s)	384, 550
Cfr13I	GGNCC	1 cut(s)	574
CseI	GACGC	2 cut(s)	608, 819
Csp6I	GTAC	3 cut(s)	73, 360, 655
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	7 cut(s)	59, 70, 322, 432, 453, 595, 628
CviQI	GTAC	3 cut(s)	73, 360, 655
DdeI	CTNAG	2 cut(s)	261, 426
DpnI	GATC	3 cut(s)	107, 617, 678
DpnII	GATC	3 cut(s)	105, 615, 676
Eam1104I	CTCTTC	2 cut(s)	129, 330
EarI	CTCTTC	2 cut(s)	129, 330
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	237, 606, 801
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	832
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	569
EcoT14I	CCWWGG	3 cut(s)	237, 606, 801
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	3 cut(s)	237, 606, 801
FaeI	CATG	7 cut(s)	62, 73, 325, 435, 456, 598, 631
FaiI	YATR	9 cut(s)	60, 71, 282, 323, 433, 454, 579, 596, 629
FaqI	GGGAC	2 cut(s)	554, 822
FatI	CATG	7 cut(s)	58, 69, 321, 431, 452, 594, 627
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	6 cut(s)	64, 67, 207, 266, 491, 603
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	6 cut(s)	64, 67, 207, 266, 491, 603
GlaI	GCGC	2 cut(s)	383, 549
GluI	GCNGC	6 cut(s)	64, 67, 207, 266, 491, 603
HaeIII	GGCC	4 cut(s)	98, 287, 576, 605
HapII	CCGG	2 cut(s)	308, 646
HgaI	GACGC	2 cut(s)	608, 819
HhaI	GCGC	2 cut(s)	384, 550
Hin1I	GRCGYC	2 cut(s)	222, 591
Hin1II	CATG	7 cut(s)	62, 73, 325, 435, 456, 598, 631
Hin6I	GCGC	2 cut(s)	382, 548
HinP1I	GCGC	2 cut(s)	382, 548
HincII	GTYRAC	2 cut(s)	367, 409
HindII	GTYRAC	2 cut(s)	367, 409
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	2 cut(s)	242, 758
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	308, 646
HphI	GGTGA	4 cut(s)	137, 307, 610, 679
Hpy166II	GTNNAC	3 cut(s)	298, 367, 409
Hpy188I	TCNGA	8 cut(s)	11, 220, 231, 247, 262, 317, 354, 817
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	3 cut(s)	298, 367, 409
Hpy99I	CGWCG	5 cut(s)	181, 224, 227, 662, 824
HpyAV	CCTTC	4 cut(s)	35, 223, 267, 574
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	4 cut(s)	197, 222, 591, 792
HpyCH4V	TGCA	5 cut(s)	30, 78, 115, 490, 771
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 75, 84, 284, 398, 499
HpyF3I	CTNAG	2 cut(s)	261, 426
HpySE526I	ACGT	4 cut(s)	197, 222, 591, 792
Hsp92I	GRCGYC	2 cut(s)	222, 591
Hsp92II	CATG	7 cut(s)	62, 73, 325, 435, 456, 598, 631
HspAI	GCGC	2 cut(s)	382, 548
KpnI	GGTACC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	615
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	105, 615, 676
LguI	GCTCTTC	1 cut(s)	129
Lsp1109I	GCAGC	2 cut(s)	218, 502
LweI	GCATC	2 cut(s)	379, 502
MaeII	ACGT	4 cut(s)	197, 222, 591, 792
MaeIII	GTNAC	2 cut(s)	18, 198
MalI	GATC	3 cut(s)	107, 617, 678
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	3 cut(s)	105, 615, 676
MboII	GAAGA	5 cut(s)	146, 347, 356, 682, 753
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	2 cut(s)	141, 173
MluCI	AATT	2 cut(s)	155, 515
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	243, 332, 630
MnlI	CCTC	5 cut(s)	88, 425, 470, 580, 733
MseI	TTAA	3 cut(s)	366, 438, 726
MspI	CCGG	2 cut(s)	308, 646
MspR9I	CCNGG	2 cut(s)	571, 646
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	2 cut(s)	584, 602
MwoI	GCNNNNNNNGC	6 cut(s)	36, 75, 84, 284, 398, 499
NciI	CCSGG	1 cut(s)	646
NdeII	GATC	3 cut(s)	105, 615, 676
NlaIII	CATG	7 cut(s)	62, 73, 325, 435, 456, 598, 631
NlaIV	GGNNCC	2 cut(s)	361, 575
NmuCI	GTSAC	2 cut(s)	18, 198
NspI	RCATGY	3 cut(s)	73, 435, 456
PaeI	GCATGC	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 588
PfeI	GAWTC	1 cut(s)	758
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	6 cut(s)	65, 68, 208, 267, 492, 604
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	361, 575
PspPI	GGNCC	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	676
RsaI	GTAC	3 cut(s)	74, 361, 656
RsaNI	GTAC	3 cut(s)	73, 360, 655
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	366, 438, 726
SatI	GCNGC	6 cut(s)	64, 67, 207, 266, 491, 603
Sau3AI	GATC	3 cut(s)	105, 615, 676
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	571, 646
SduI	GDGCHC	2 cut(s)	141, 173
SfaNI	GCATC	2 cut(s)	379, 502
SmlI	CTYRAG	3 cut(s)	140, 161, 497
SmoI	CTYRAG	3 cut(s)	140, 161, 497
SphI	GCATGC	1 cut(s)	456
Sse9I	AATT	2 cut(s)	155, 515
SsiI	CCGC	6 cut(s)	63, 66, 266, 301, 584, 602
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	569, 644
StyI	CCWWGG	3 cut(s)	237, 606, 801
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	4 cut(s)	200, 225, 594, 795
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	155, 515
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	4 cut(s)	66, 69, 268, 605
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	3 cut(s)	366, 438, 726
Tru9I	TTAA	3 cut(s)	366, 438, 726
TscAI	CASTG	3 cut(s)	207, 427, 646
TseFI	GTSAC	2 cut(s)	18, 198
TseI	GCWGC	2 cut(s)	206, 490
Tsp45I	GTSAC	2 cut(s)	18, 198
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	3 cut(s)	207, 427, 646
Van91I	CCANNNNNTGG	1 cut(s)	448
XapI	RAATTY	2 cut(s)	155, 515
XceI	RCATGY	3 cut(s)	73, 435, 456
ZraI	GACGTC	2 cut(s)	223, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.