Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Reverse (-)

57257513 .. 57258628

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGTGCATATCTTGCCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCATTCCTCAAGTTCTCCACTCGCTCCCAACCCATCTCCTTCTCGGACGTCGTTTTGGTTGCCTCCCAGGATCCCTCCGCCGCAGGGCTCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGTCGTTCCCCGGTGTTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTGTCCTATGATGCCCTTCGTGCCTTCGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCTTAATATTGGCCGAAAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCGCACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACGCGGGAGGAGTACATGGAGCTGGTGGAGAAAGATCCACGACTCGTGGTGGAAGTCTACGAGGCTTATCTGTCGAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTAGGTCCTGCAGTTAAGCCCCCCCTCCGTGATCCCTTTAGTGATCTAGATTATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

257

Amino Acids

29.0

Weight (kDa)

4.79

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	55 - 162	1.4e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
Acc16I	TGCGCA	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	2 cut(s)	102, 601
AciI	CCGC	3 cut(s)	207, 210, 601
AclWI	GGATC	4 cut(s)	194, 207, 626, 740
AcoI	YGGCCR	1 cut(s)	426
AcvI	CACGTG	2 cut(s)	38, 51
AcyI	GRCGYC	2 cut(s)	42, 177
AfaI	GTAC	2 cut(s)	437, 611
AfiI	CCNNNNNNNGG	3 cut(s)	213, 232, 397
AjnI	CCWGG	3 cut(s)	18, 195, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	7 cut(s)	94, 278, 380, 487, 513, 592, 619
AluI	AGCT	7 cut(s)	94, 278, 380, 487, 513, 592, 619
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	4 cut(s)	194, 207, 626, 740
AoxI	GGCC	6 cut(s)	72, 120, 234, 243, 405, 426
ApeKI	GCWGC	3 cut(s)	445, 557, 689
AspLEI	GCGC	2 cut(s)	102, 526
AspS9I	GGNCC	2 cut(s)	235, 719
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	96, 219
BauI	CACGAG	2 cut(s)	641, 711
BbrPI	CACGTG	2 cut(s)	38, 51
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	457, 569, 701
BccI	CCATC	2 cut(s)	170, 289
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	3 cut(s)	20, 197, 440
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	2 cut(s)	687, 723
BglI	GCCNNNNNGGC	3 cut(s)	242, 251, 312
BisI	GCNGC	4 cut(s)	210, 446, 558, 690
BlsI	GCNGC	4 cut(s)	211, 447, 559, 691
Bme1390I	CCNGG	4 cut(s)	20, 197, 266, 440
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	235, 719
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	4 cut(s)	20, 197, 266, 440
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	3 cut(s)	334, 457, 544
BmuI	ACTGGG	1 cut(s)	502
BpuEI	CTTGAG	5 cut(s)	80, 101, 122, 305, 437
BpuMI	CCSGG	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	38, 51
BsaHI	GRCGYC	2 cut(s)	42, 177
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	84, 123, 195, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 232, 397
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	3 cut(s)	20, 197, 440
BseDI	CCNNGG	4 cut(s)	84, 123, 195, 264
BseLI	CCNNNNNNNGG	3 cut(s)	213, 232, 397
BseMII	CTCAG	2 cut(s)	299, 372
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	4 cut(s)	83, 101, 104, 620
BseXI	GCAGC	3 cut(s)	457, 569, 701
BsgI	GTGCAG	2 cut(s)	464, 693
Bsh1236I	CGCG	2 cut(s)	102, 601
BshFI	GGCC	6 cut(s)	74, 122, 236, 245, 407, 428
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	3 cut(s)	45, 233, 266
BslFI	GGGAC	2 cut(s)	209, 509
BslI	CCNNNNNNNGG	3 cut(s)	213, 232, 397
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	209, 509
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	6 cut(s)	74, 122, 236, 245, 407, 428
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	96, 219
Bsp143I	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
BspACI	CCGC	3 cut(s)	207, 210, 601
BspANI	GGCC	6 cut(s)	74, 122, 236, 245, 407, 428
BspCNI	CTCAG	2 cut(s)	300, 373
BspFNI	CGCG	2 cut(s)	102, 601
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	2 cut(s)	691, 727
BspPI	GGATC	4 cut(s)	194, 207, 626, 740
BspTNI	GGTCTC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	4 cut(s)	84, 123, 195, 264
BssMI	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
BssNI	GRCGYC	2 cut(s)	42, 177
BssSI	CACGAG	2 cut(s)	641, 711
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	2 cut(s)	641, 711
Bst2UI	CCWGG	3 cut(s)	20, 197, 440
BstACI	GRCGYC	2 cut(s)	42, 177
BstAPI	GCANNNNNTGC	2 cut(s)	15, 60
BstBAI	YACGTR	2 cut(s)	38, 51
BstC8I	GCNNGC	2 cut(s)	46, 409
BstDEI	CTNAG	2 cut(s)	308, 381
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstFNI	CGCG	2 cut(s)	102, 601
BstHHI	GCGC	2 cut(s)	102, 526
BstKTI	GATC	8 cut(s)	108, 202, 327, 573, 634, 681, 748, 760
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 41, 60, 128, 242, 251, 312, 353, 598
BstNI	CCWGG	3 cut(s)	20, 197, 440
BstSCI	CCNGG	4 cut(s)	18, 195, 264, 438
BstSFI	CTRYAG	2 cut(s)	687, 723
BstUI	CGCG	2 cut(s)	102, 601
BstV1I	GCAGC	3 cut(s)	457, 569, 701
BstX2I	RGATCY	2 cut(s)	199, 631
BstYI	RGATCY	2 cut(s)	199, 631
BsuRI	GGCC	6 cut(s)	74, 122, 236, 245, 407, 428
Cac8I	GCNNGC	2 cut(s)	46, 409
CfoI	GCGC	2 cut(s)	102, 526
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	235, 719
CseI	GACGC	2 cut(s)	41, 50
CsiI	ACCWGGT	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	436, 610
CviAII	CATG	2 cut(s)	583, 613
CviQI	GTAC	2 cut(s)	436, 610
DdeI	CTNAG	2 cut(s)	308, 381
DpnI	GATC	8 cut(s)	107, 201, 326, 572, 633, 680, 747, 759
DpnII	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
EaeI	YGGCCR	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	96, 219
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	94
Eco72I	CACGTG	2 cut(s)	38, 51
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	3 cut(s)	18, 195, 438
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	2 cut(s)	96, 219
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	586, 616
FaqI	GGGAC	2 cut(s)	209, 509
FatI	CATG	2 cut(s)	582, 612
FauI	CCCGC	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	210, 446, 558, 690
FriOI	GRGCYC	2 cut(s)	96, 219
Fsp4HI	GCNGC	4 cut(s)	210, 446, 558, 690
FspBI	CTAG	1 cut(s)	761
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	2 cut(s)	101, 525
GluI	GCNGC	4 cut(s)	210, 446, 558, 690
HaeIII	GGCC	6 cut(s)	74, 122, 236, 245, 407, 428
HapII	CCGG	3 cut(s)	45, 233, 266
HgaI	GACGC	2 cut(s)	41, 50
HhaI	GCGC	2 cut(s)	102, 526
Hin1I	GRCGYC	2 cut(s)	42, 177
Hin1II	CATG	2 cut(s)	586, 616
Hin6I	GCGC	2 cut(s)	100, 524
HinP1I	GCGC	2 cut(s)	100, 524
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	256, 289, 639, 701
HpaII	CCGG	3 cut(s)	45, 233, 266
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	364, 655
Hpy188I	TCNGA	3 cut(s)	175, 275, 294
Hpy188III	TCNNGA	2 cut(s)	322, 761
Hpy8I	GTNNAC	2 cut(s)	364, 655
Hpy99I	CGWCG	3 cut(s)	35, 113, 182
HpyAV	CCTTC	3 cut(s)	178, 359, 367
HpyCH4IV	ACGT	3 cut(s)	37, 50, 177
HpyCH4V	TGCA	7 cut(s)	9, 54, 445, 557, 689, 710, 725
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 41, 60, 128, 242, 251, 312, 353, 598
HpyF3I	CTNAG	2 cut(s)	308, 381
HpySE526I	ACGT	3 cut(s)	37, 50, 177
Hsp92I	GRCGYC	2 cut(s)	42, 177
Hsp92II	CATG	2 cut(s)	586, 616
HspAI	GCGC	2 cut(s)	100, 524
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
LmnI	GCTCC	3 cut(s)	91, 158, 616
Lsp1109I	GCAGC	3 cut(s)	457, 569, 701
LweI	GCATC	3 cut(s)	334, 457, 544
MabI	ACCWGGT	1 cut(s)	438
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	3 cut(s)	37, 50, 177
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	8 cut(s)	107, 201, 326, 572, 633, 680, 747, 759
MboI	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
MboII	GAAGA	1 cut(s)	696
MflI	RGATCY	2 cut(s)	199, 631
MhlI	GDGCHC	2 cut(s)	96, 219
MlyI	GAGTC	2 cut(s)	265, 633
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	2 cut(s)	419, 729
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	45, 233, 266
MspR9I	CCNGG	4 cut(s)	20, 197, 266, 440
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	3 cut(s)	20, 197, 440
MvnI	CGCG	2 cut(s)	102, 601
MwoI	GCNNNNNNNGC	9 cut(s)	15, 41, 60, 128, 242, 251, 312, 353, 598
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	586, 616
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	38
NsbI	TGCGCA	1 cut(s)	525
PctI	GAATGC	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	289, 701
PkrI	GCNGC	4 cut(s)	211, 447, 559, 691
PleI	GAGTC	2 cut(s)	264, 633
PmaCI	CACGTG	2 cut(s)	38, 51
PmlI	CACGTG	2 cut(s)	38, 51
PpsI	GAGTC	2 cut(s)	264, 633
Ppu21I	YACGTR	2 cut(s)	38, 51
PpuMI	RGGWCCY	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	3 cut(s)	18, 195, 438
PspCI	CACGTG	2 cut(s)	38, 51
PspGI	CCWGG	3 cut(s)	18, 195, 438
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	235, 719
PspPPI	RGGWCCY	1 cut(s)	719
PstI	CTGCAG	2 cut(s)	691, 727
PsuI	RGATCY	2 cut(s)	199, 631
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	437, 611
RsaNI	GTAC	2 cut(s)	436, 610
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	419, 729
SatI	GCNGC	4 cut(s)	210, 446, 558, 690
Sau3AI	GATC	8 cut(s)	105, 199, 324, 570, 631, 678, 745, 757
Sau96I	GGNCC	2 cut(s)	235, 719
SchI	GAGTC	2 cut(s)	265, 633
ScrFI	CCNGG	4 cut(s)	20, 197, 266, 440
SduI	GDGCHC	2 cut(s)	96, 219
SexAI	ACCWGGT	1 cut(s)	438
SfaNI	GCATC	3 cut(s)	334, 457, 544
SfcI	CTRYAG	2 cut(s)	687, 723
SfiI	GGCCNNNNNGGCC	1 cut(s)	242
SinI	GGWCC	1 cut(s)	719
SmlI	CTYRAG	5 cut(s)	95, 116, 137, 284, 452
SmoI	CTYRAG	5 cut(s)	95, 116, 137, 284, 452
SsiI	CCGC	3 cut(s)	207, 210, 601
SspI	AATATT	2 cut(s)	423, 507
SspMI	CTAG	1 cut(s)	761
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	18, 195, 264, 438
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	3 cut(s)	40, 53, 180
TaqI	TCGA	3 cut(s)	108, 393, 671
TaqII	GACCGA	1 cut(s)	98
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	289, 701
Tru1I	TTAA	2 cut(s)	419, 729
Tru9I	TTAA	2 cut(s)	419, 729
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	3 cut(s)	445, 557, 689
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	211, 731
VpaK11BI	GGWCC	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	395
XbaI	TCTAGA	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	1 cut(s)	761
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.