Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Reverse (-)

57295096 .. 57296267

Gene Structure 1172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG378800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGACGACAAGACAGGCGGCATCATCATCATCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGCCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTCCACCCGCTCCCAACCCATCTCCTTCTCCGACGTCGTTTTGGTTGCCTCCCAGGATCCCTCCGCCGCAGGGCTCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGTCGTTCTCCGGTATTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTATCCTATGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCCTAATATTGGCCGAAAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCACACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACGCGTGAGGAGTACATGGAGCTGGTGGAGAAAGATCCACGACTCGTGGTGGAAGTCTACGAGGCTTATCTGTCAAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTAGGTCCTGCAGTTAAGCCCCCCCTCCGTGATGCCTTTGGTGATCTAGATTATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

274

Amino Acids

30.59

Weight (kDa)

4.91

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	72 - 179	1.7e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	705
AccII	CGCG	2 cut(s)	153, 652
AciI	CCGC	4 cut(s)	17, 202, 258, 261
AclWI	GGATC	3 cut(s)	245, 258, 677
AcoI	YGGCCR	1 cut(s)	477
AcvI	CACGTG	2 cut(s)	89, 102
AcyI	GRCGYC	2 cut(s)	93, 228
AfaI	GTAC	2 cut(s)	488, 662
AfiI	CCNNNNNNNGG	4 cut(s)	264, 283, 448, 475
AflIII	ACRYGT	1 cut(s)	650
AjnI	CCWGG	3 cut(s)	69, 246, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	7 cut(s)	145, 329, 431, 538, 564, 643, 670
AluI	AGCT	7 cut(s)	145, 329, 431, 538, 564, 643, 670
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	245, 258, 677
AoxI	GGCC	6 cut(s)	123, 171, 285, 294, 456, 477
ApeKI	GCWGC	3 cut(s)	496, 608, 740
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	286, 770
AsuHPI	GGTGA	2 cut(s)	392, 818
AvaII	GGWCC	1 cut(s)	770
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	2 cut(s)	147, 270
BauI	CACGAG	2 cut(s)	692, 762
BbrPI	CACGTG	2 cut(s)	89, 102
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	508, 620, 752
BccI	CCATC	2 cut(s)	221, 340
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	3 cut(s)	71, 248, 491
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	2 cut(s)	738, 774
BfuI	GTATCC	1 cut(s)	397
BglI	GCCNNNNNGGC	3 cut(s)	293, 302, 363
BisI	GCNGC	5 cut(s)	18, 261, 497, 609, 741
BlsI	GCNGC	5 cut(s)	19, 262, 498, 610, 742
Bme1390I	CCNGG	3 cut(s)	71, 248, 491
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	286, 770
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	3 cut(s)	71, 248, 491
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	5 cut(s)	29, 385, 508, 595, 787
BmuI	ACTGGG	1 cut(s)	553
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpuEI	CTTGAG	5 cut(s)	131, 152, 173, 356, 488
BsaAI	YACGTR	2 cut(s)	89, 102
BsaHI	GRCGYC	2 cut(s)	93, 228
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	135, 174, 246
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 283, 448, 475
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	548
BseBI	CCWGG	3 cut(s)	71, 248, 491
BseDI	CCNNGG	3 cut(s)	135, 174, 246
BseLI	CCNNNNNNNGG	4 cut(s)	264, 283, 448, 475
BseMII	CTCAG	2 cut(s)	350, 423
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	4 cut(s)	134, 152, 155, 671
BseXI	GCAGC	3 cut(s)	508, 620, 752
BsgI	GTGCAG	2 cut(s)	515, 744
Bsh1236I	CGCG	2 cut(s)	153, 652
BshFI	GGCC	6 cut(s)	125, 173, 287, 296, 458, 479
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	96, 284, 317
BslFI	GGGAC	2 cut(s)	260, 560
BslI	CCNNNNNNNGG	4 cut(s)	264, 283, 448, 475
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	260, 560
BsnI	GGCC	6 cut(s)	125, 173, 287, 296, 458, 479
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	147, 270
Bsp143I	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
BspACI	CCGC	4 cut(s)	17, 202, 258, 261
BspANI	GGCC	6 cut(s)	125, 173, 287, 296, 458, 479
BspCNI	CTCAG	2 cut(s)	351, 424
BspFNI	CGCG	2 cut(s)	153, 652
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	2 cut(s)	742, 778
BspPI	GGATC	3 cut(s)	245, 258, 677
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	135, 174, 246
BssMI	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
BssNI	GRCGYC	2 cut(s)	93, 228
BssSI	CACGAG	2 cut(s)	692, 762
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	2 cut(s)	692, 762
Bst2UI	CCWGG	3 cut(s)	71, 248, 491
BstACI	GRCGYC	2 cut(s)	93, 228
BstAPI	GCANNNNNTGC	2 cut(s)	66, 111
BstBAI	YACGTR	2 cut(s)	89, 102
BstC8I	GCNNGC	2 cut(s)	97, 460
BstDEI	CTNAG	2 cut(s)	359, 432
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstFNI	CGCG	2 cut(s)	153, 652
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	7 cut(s)	159, 253, 378, 624, 685, 732, 811
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
BstMWI	GCNNNNNNNGC	9 cut(s)	66, 92, 111, 179, 293, 302, 363, 404, 649
BstNI	CCWGG	3 cut(s)	71, 248, 491
BstSCI	CCNGG	3 cut(s)	69, 246, 489
BstSFI	CTRYAG	2 cut(s)	738, 774
BstUI	CGCG	2 cut(s)	153, 652
BstV1I	GCAGC	3 cut(s)	508, 620, 752
BstX2I	RGATCY	2 cut(s)	250, 682
BstYI	RGATCY	2 cut(s)	250, 682
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	6 cut(s)	125, 173, 287, 296, 458, 479
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	97, 460
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	286, 770
CseI	GACGC	2 cut(s)	92, 101
CsiI	ACCWGGT	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	487, 661
CviAII	CATG	2 cut(s)	634, 664
CviQI	GTAC	2 cut(s)	487, 661
DdeI	CTNAG	2 cut(s)	359, 432
DpnI	GATC	7 cut(s)	158, 252, 377, 623, 684, 731, 810
DpnII	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
EaeI	YGGCCR	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	147, 270
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	770
Eco53kI	GAGCTC	1 cut(s)	145
Eco72I	CACGTG	2 cut(s)	89, 102
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	3 cut(s)	69, 246, 489
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	147, 270
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	637, 667
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	260, 560
FatI	CATG	2 cut(s)	633, 663
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	5 cut(s)	18, 261, 497, 609, 741
FriOI	GRGCYC	2 cut(s)	147, 270
Fsp4HI	GCNGC	5 cut(s)	18, 261, 497, 609, 741
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	5 cut(s)	18, 261, 497, 609, 741
HaeIII	GGCC	6 cut(s)	125, 173, 287, 296, 458, 479
HapII	CCGG	3 cut(s)	96, 284, 317
HgaI	GACGC	2 cut(s)	92, 101
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	2 cut(s)	93, 228
Hin1II	CATG	2 cut(s)	637, 667
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	4 cut(s)	307, 340, 690, 752
HpaII	CCGG	3 cut(s)	96, 284, 317
HphI	GGTGA	2 cut(s)	392, 818
Hpy166II	GTNNAC	2 cut(s)	415, 706
Hpy188I	TCNGA	3 cut(s)	226, 326, 345
Hpy188III	TCNNGA	2 cut(s)	373, 812
Hpy8I	GTNNAC	2 cut(s)	415, 706
Hpy99I	CGWCG	4 cut(s)	86, 164, 230, 233
HpyAV	CCTTC	3 cut(s)	193, 229, 410
HpyCH4IV	ACGT	3 cut(s)	88, 101, 228
HpyCH4V	TGCA	8 cut(s)	60, 105, 496, 575, 608, 740, 761, 776
HpyF10VI	GCNNNNNNNGC	9 cut(s)	66, 92, 111, 179, 293, 302, 363, 404, 649
HpyF3I	CTNAG	2 cut(s)	359, 432
HpySE526I	ACGT	3 cut(s)	88, 101, 228
Hsp92I	GRCGYC	2 cut(s)	93, 228
Hsp92II	CATG	2 cut(s)	637, 667
HspAI	GCGC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
LmnI	GCTCC	3 cut(s)	142, 209, 667
Lsp1109I	GCAGC	3 cut(s)	508, 620, 752
LweI	GCATC	5 cut(s)	29, 385, 508, 595, 787
MabI	ACCWGGT	1 cut(s)	489
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	3 cut(s)	88, 101, 228
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	7 cut(s)	158, 252, 377, 623, 684, 731, 810
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
MboII	GAAGA	2 cut(s)	61, 747
MflI	RGATCY	2 cut(s)	250, 682
MhlI	GDGCHC	2 cut(s)	147, 270
MluI	ACGCGT	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	316, 684
MmeI	TCCRAC	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	780
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	3 cut(s)	96, 284, 317
MspR9I	CCNGG	3 cut(s)	71, 248, 491
MvaI	CCWGG	3 cut(s)	71, 248, 491
MvnI	CGCG	2 cut(s)	153, 652
MwoI	GCNNNNNNNGC	9 cut(s)	66, 92, 111, 179, 293, 302, 363, 404, 649
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	637, 667
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	340, 752
PkrI	GCNGC	5 cut(s)	19, 262, 498, 610, 742
PleI	GAGTC	2 cut(s)	315, 684
PmaCI	CACGTG	2 cut(s)	89, 102
PmlI	CACGTG	2 cut(s)	89, 102
PpsI	GAGTC	2 cut(s)	315, 684
Ppu21I	YACGTR	2 cut(s)	89, 102
PpuMI	RGGWCCY	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	69, 246, 489
PspCI	CACGTG	2 cut(s)	89, 102
PspGI	CCWGG	3 cut(s)	69, 246, 489
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	286, 770
PspPPI	RGGWCCY	1 cut(s)	770
PstI	CTGCAG	2 cut(s)	742, 778
PsuI	RGATCY	2 cut(s)	250, 682
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	488, 662
RsaNI	GTAC	2 cut(s)	487, 661
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	5 cut(s)	18, 261, 497, 609, 741
Sau3AI	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
Sau96I	GGNCC	2 cut(s)	286, 770
SchI	GAGTC	2 cut(s)	316, 684
ScrFI	CCNGG	3 cut(s)	71, 248, 491
SduI	GDGCHC	2 cut(s)	147, 270
SexAI	ACCWGGT	1 cut(s)	489
SfaNI	GCATC	5 cut(s)	29, 385, 508, 595, 787
SfcI	CTRYAG	2 cut(s)	738, 774
SfiI	GGCCNNNNNGGCC	1 cut(s)	293
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	5 cut(s)	146, 167, 188, 335, 503
SmoI	CTYRAG	5 cut(s)	146, 167, 188, 335, 503
SsiI	CCGC	4 cut(s)	17, 202, 258, 261
SspI	AATATT	2 cut(s)	474, 558
SspMI	CTAG	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	69, 246, 489
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	3 cut(s)	91, 104, 231
TaqI	TCGA	2 cut(s)	159, 444
TaqII	GACCGA	1 cut(s)	149
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	2 cut(s)	20, 263
TfiI	GAWTC	2 cut(s)	340, 752
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	496, 608, 740
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	2 cut(s)	262, 782
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	770
XagI	CCTNNNNNAGG	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	811
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	1 cut(s)	812
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.