Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40640954 .. 40643139

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G488100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGGTGCAAATCTTGCGAGAGCAGCTTCCAAGATTATTACGCCGATACCTGCAAGCAGTGCCACGAGCACCACAAGGCCAAGGTCGCTTTTCTCGGGGCCACCCACCCGGCTTCCTTCTCCGATGTCGTTCTGTTTGCCTCCGACGACGAGGCCGCTGGTCCCATCCCGGCCCATAAAGCCGTTTTGGTGAGCCGTTCTCCGGTGTTTAGAGCCATGTTTGAGAATGAGATGGAAGAAAGCCTGAGCGGCACCATCAAGATTGGCGAAGTGTCCTACCGCACCCTTGGTGCCTTTGTCAACTACCTCTACACTGCTGAGGTACGCCTTGACCAGCAATTCGCCTGTGACCTCTTTGTAATGGCTGAAAAATACCAGGTCCAGCATCTCAAAGACTACTGCCAGACGTTCTTGTTGGCCAACCTCAACTGTGACAATTCACTTTCGACCTACACCTTAGCGCACCGGCATAATGCCAAGCAGATCATCGACGCGGCCTTAATAGTGATCACAGACAACATGGACAAGCTTACTTCCCGGAAAGAGTACGCCAAGCTCAAGGAGAAAGATCCGCAACTCGTGATCGAAATCTATGAAGCTTTTCTCTCCAGACATTCTTCATTTTCCTGTGTGCGCACGGTTTATTCCCCGTTTACGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

222

Amino Acids

25.1

Weight (kDa)

6.13

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	59
AccB1I	GGYRCC	2 cut(s)	251, 290
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	1 cut(s)	494
AciI	CCGC	5 cut(s)	156, 249, 280, 494, 572
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	417
AfaI	GTAC	2 cut(s)	324, 548
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	4 cut(s)	27, 529, 556, 599
AluI	AGCT	4 cut(s)	27, 529, 556, 599
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	6 cut(s)	78, 99, 153, 171, 417, 495
ApeKI	GCWGC	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	463, 636
AspS9I	GGNCC	4 cut(s)	99, 161, 172, 379
AsuC2I	CCSGG	3 cut(s)	110, 170, 538
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	161, 379
BalI	TGGCCA	1 cut(s)	419
BanI	GGYRCC	2 cut(s)	251, 290
BauI	CACGAG	2 cut(s)	65, 578
Bbv12I	GWGCWC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	173, 226, 263
BceAI	ACGGC	2 cut(s)	167, 180
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	3 cut(s)	110, 170, 538
BfuAI	ACCTGC	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	4 cut(s)	25, 156, 250, 495
BlsI	GCNGC	4 cut(s)	26, 157, 251, 496
Bme1390I	CCNGG	4 cut(s)	110, 170, 377, 538
Bme18I	GGWCC	2 cut(s)	161, 379
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	99, 161, 172, 379
BmiI	GGNNCC	4 cut(s)	100, 163, 253, 292
BmrFI	CCNGG	4 cut(s)	110, 170, 377, 538
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	1 cut(s)	592
Bpu10I	CCTNAGC	3 cut(s)	245, 318, 457
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	3 cut(s)	110, 170, 538
BsaBI	GATNNNNATC	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	81, 286
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	81, 286
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	236, 309
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	6 cut(s)	80, 101, 155, 173, 419, 497
BshNI	GGYRCC	2 cut(s)	251, 290
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	5 cut(s)	110, 170, 203, 466, 538
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	6 cut(s)	80, 101, 155, 173, 419, 497
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	4 cut(s)	483, 507, 568, 582
BspACI	CCGC	5 cut(s)	156, 249, 280, 494, 572
BspANI	GGCC	6 cut(s)	80, 101, 155, 173, 419, 497
BspCNI	CTCAG	2 cut(s)	237, 310
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	4 cut(s)	100, 163, 253, 292
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	2 cut(s)	251, 290
BsrBI	CCGCTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	465
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	2 cut(s)	81, 286
BssMI	GATC	4 cut(s)	483, 507, 568, 582
BssSI	CACGAG	2 cut(s)	65, 578
BssT1I	CCWWGG	2 cut(s)	81, 286
Bst2BI	CACGAG	2 cut(s)	65, 578
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	431, 640
BstAPI	GCANNNNNTGC	2 cut(s)	15, 60
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	245, 318, 457
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	463, 636
BstKTI	GATC	4 cut(s)	486, 510, 571, 585
BstMBI	GATC	4 cut(s)	483, 507, 568, 582
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 24, 60, 86, 179, 249
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	108, 168, 375, 536
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	6 cut(s)	80, 101, 155, 173, 419, 497
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	65, 312
BtsIMutI	CAGTG	2 cut(s)	65, 312
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	2 cut(s)	463, 636
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	4 cut(s)	99, 161, 172, 379
CseI	GACGC	1 cut(s)	500
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	323, 547
CviAII	CATG	2 cut(s)	217, 520
CviQI	GTAC	2 cut(s)	323, 547
DdeI	CTNAG	3 cut(s)	245, 318, 457
DpnI	GATC	4 cut(s)	485, 509, 570, 584
DpnII	GATC	4 cut(s)	483, 507, 568, 582
EaeI	YGGCCR	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	81, 286
Eco47I	GGWCC	2 cut(s)	161, 379
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	81, 286
ErhI	CCWWGG	2 cut(s)	81, 286
FaeI	CATG	2 cut(s)	220, 523
FaiI	YATR	5 cut(s)	177, 218, 471, 521, 594
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	2 cut(s)	216, 519
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	25, 156, 250, 495
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	25, 156, 250, 495
FspAI	RTGCGCAY	1 cut(s)	635
FspI	TGCGCA	1 cut(s)	635
GlaI	GCGC	2 cut(s)	462, 635
GluI	GCNGC	4 cut(s)	25, 156, 250, 495
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	6 cut(s)	80, 101, 155, 173, 419, 497
HapII	CCGG	5 cut(s)	110, 170, 203, 466, 538
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	2 cut(s)	463, 636
Hin1II	CATG	2 cut(s)	220, 523
Hin6I	GCGC	2 cut(s)	461, 634
HinP1I	GCGC	2 cut(s)	461, 634
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	2 cut(s)	527, 597
HpaII	CCGG	5 cut(s)	110, 170, 203, 466, 538
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	301, 654
Hpy188I	TCNGA	2 cut(s)	124, 145
Hpy188III	TCNNGA	3 cut(s)	259, 580, 609
Hpy8I	GTNNAC	2 cut(s)	301, 654
Hpy99I	CGWCG	3 cut(s)	149, 152, 494
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	431, 640
HpyCH4IV	ACGT	2 cut(s)	407, 656
HpyCH4V	TGCA	2 cut(s)	9, 54
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 24, 60, 86, 179, 249
HpyF3I	CTNAG	3 cut(s)	245, 318, 457
HpySE526I	ACGT	2 cut(s)	407, 656
Hsp92II	CATG	2 cut(s)	220, 523
HspAI	GCGC	2 cut(s)	461, 634
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	483, 507, 568, 582
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	394
MabI	ACCWGGT	1 cut(s)	375
MaeII	ACGT	2 cut(s)	407, 656
MaeIII	GTNAC	2 cut(s)	347, 431
MalI	GATC	4 cut(s)	485, 509, 570, 584
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	4 cut(s)	483, 507, 568, 582
MboII	GAAGA	2 cut(s)	248, 609
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	2 cut(s)	338, 436
MluNI	TGGCCA	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	145, 151, 313, 317, 362, 434
Mox20I	TGGCCA	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	5 cut(s)	110, 170, 203, 466, 538
MspR9I	CCNGG	4 cut(s)	110, 170, 377, 538
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	6 cut(s)	15, 24, 60, 86, 179, 249
NciI	CCSGG	3 cut(s)	110, 170, 538
NdeII	GATC	4 cut(s)	483, 507, 568, 582
NlaIII	CATG	2 cut(s)	220, 523
NlaIV	GGNNCC	4 cut(s)	100, 163, 253, 292
NmuCI	GTSAC	2 cut(s)	347, 431
NsbI	TGCGCA	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	600
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	26, 157, 251, 496
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	4 cut(s)	100, 163, 253, 292
PspPI	GGNCC	4 cut(s)	99, 161, 172, 379
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	2 cut(s)	324, 548
RsaNI	GTAC	2 cut(s)	323, 547
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	4 cut(s)	25, 156, 250, 495
Sau3AI	GATC	4 cut(s)	483, 507, 568, 582
Sau96I	GGNCC	4 cut(s)	99, 161, 172, 379
ScrFI	CCNGG	4 cut(s)	110, 170, 377, 538
SduI	GDGCHC	1 cut(s)	72
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	2 cut(s)	161, 379
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	2 cut(s)	338, 436
SsiI	CCGC	5 cut(s)	156, 249, 280, 494, 572
StyD4I	CCNGG	4 cut(s)	108, 168, 375, 536
StyI	CCWWGG	2 cut(s)	81, 286
TaaI	ACNGT	2 cut(s)	431, 640
TaiI	ACGT	2 cut(s)	410, 659
TaqI	TCGA	3 cut(s)	446, 489, 585
TasI	AATT	2 cut(s)	338, 436
TauI	GCSGC	3 cut(s)	158, 252, 497
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	2 cut(s)	65, 319
TseFI	GTSAC	2 cut(s)	347, 431
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	2 cut(s)	347, 431
TspDTI	ATGAA	2 cut(s)	609, 609
TspRI	CASTG	2 cut(s)	65, 319
VpaK11BI	GGWCC	2 cut(s)	161, 379
XmnI	GAANNNNTTC	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.