Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

41393968 .. 41396008

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCGTGCCTTTGCTGAAGAAGCAGATTGTGAAGAAGCGCCTCAAGCAGTTCAAGAGGCCCCAGAGTGACAGGAAGATATGTGTCAAGACAAACTGGAGAAGGCCCAAGGGTATTGATTCACGTGTCAGGCGTAAGTTTAAGGGAGTCACTCTGATGCCTAACATTGGTTATGGCTCTGATAAGAAGACTCGCCACTACCTCCCCAACAAATTTAAGAAATTTGTTGTCCACAACGTCAATGAGTTGGAAGTTCTTATGATGCACAACAGGACTTACTGTGCTGAGATTGCACACAACATTTCCACCCGGAAGAGAAAGGAGATTGTTGAACGTGCAGCTCAGTTGGATGTTGTTGTCACCAACAAACTCGCCAGGTTGCGCAGCCAGGAAGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

133

Amino Acids

15.77

Weight (kDa)

10.7

Isoelectric Point (pI)

65.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32e	PF01655	16 - 122	2.6e-47	Ribosomal protein L32

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	212, 221
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	55, 332
AjnI	CCWGG	2 cut(s)	374, 387
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
AoxI	GGCC	3 cut(s)	3, 59, 104
ApeKI	GCWGC	2 cut(s)	338, 384
ApoI	RAATTY	2 cut(s)	212, 221
AspLEI	GCGC	2 cut(s)	42, 384
AspS9I	GGNCC	2 cut(s)	60, 105
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	350, 396
BciT130I	CCWGG	2 cut(s)	376, 389
BcnI	CCSGG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	43
BisI	GCNGC	2 cut(s)	339, 385
BlsI	GCNGC	2 cut(s)	340, 386
Bme1390I	CCNGG	3 cut(s)	310, 376, 389
BmgT120I	GGNCC	2 cut(s)	60, 105
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	3 cut(s)	310, 376, 389
BmsI	GCATC	2 cut(s)	147, 252
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	376, 389
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	276, 356
BseNI	ACTGG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	350, 396
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	5, 61, 106
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	3 cut(s)	5, 61, 106
BspANI	GGCC	3 cut(s)	5, 61, 106
BspCNI	CTCAG	2 cut(s)	277, 355
BspLI	GGNNCC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	376, 389
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	285, 342
BstF5I	GGATG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	42, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 46, 290
BstNI	CCWGG	2 cut(s)	376, 389
BstSCI	CCNGG	3 cut(s)	308, 374, 387
BstV1I	GCAGC	2 cut(s)	350, 396
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	5, 61, 106
BtsCI	GGATG	1 cut(s)	355
CfoI	GCGC	2 cut(s)	42, 384
Cfr13I	GGNCC	2 cut(s)	60, 105
CviJI	RGCY	6 cut(s)	5, 61, 106, 177, 341, 387
CviKI_1	RGCY	6 cut(s)	5, 61, 106, 177, 341, 387
DdeI	CTNAG	2 cut(s)	285, 342
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	374, 387
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	3 cut(s)	82, 174, 260
Fnu4HI	GCNGC	2 cut(s)	339, 385
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	339, 385
FspI	TGCGCA	1 cut(s)	383
GlaI	GCGC	2 cut(s)	41, 383
GluI	GCNGC	2 cut(s)	339, 385
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	5, 61, 106
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	2 cut(s)	42, 384
Hin6I	GCGC	2 cut(s)	40, 382
HinP1I	GCGC	2 cut(s)	40, 382
HinfI	GANTC	3 cut(s)	119, 147, 190
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	156, 181
Hpy188III	TCNNGA	2 cut(s)	55, 88
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	3 cut(s)	124, 237, 334
HpyCH4V	TGCA	3 cut(s)	265, 293, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 46, 290
HpyF3I	CTNAG	2 cut(s)	285, 342
HpySE526I	ACGT	3 cut(s)	124, 237, 334
HspAI	GCGC	2 cut(s)	40, 382
LpnPI	CCDG	9 cut(s)	58, 77, 82, 115, 256, 323, 361, 374, 388
Lsp1109I	GCAGC	2 cut(s)	350, 396
LweI	GCATC	2 cut(s)	147, 252
MaeII	ACGT	3 cut(s)	124, 237, 334
MaeIII	GTNAC	3 cut(s)	68, 148, 358
MboII	GAAGA	5 cut(s)	31, 46, 88, 199, 325
MluCI	AATT	2 cut(s)	212, 221
MlyI	GAGTC	2 cut(s)	156, 184
MmeI	TCCRAC	2 cut(s)	228, 327
MnlI	CCTC	3 cut(s)	51, 53, 212
MseI	TTAA	2 cut(s)	141, 216
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	3 cut(s)	310, 376, 389
MvaI	CCWGG	2 cut(s)	376, 389
MwoI	GCNNNNNNNGC	3 cut(s)	22, 46, 290
NciI	CCSGG	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	3 cut(s)	68, 148, 358
NsbI	TGCGCA	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	340, 386
PleI	GAGTC	2 cut(s)	155, 184
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
PpsI	GAGTC	2 cut(s)	155, 184
Ppu21I	YACGTR	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	374, 387
PspCI	CACGTG	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	374, 387
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	60, 105
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	141, 216
SatI	GCNGC	2 cut(s)	339, 385
Sau96I	GGNCC	2 cut(s)	60, 105
SchI	GAGTC	2 cut(s)	156, 184
ScrFI	CCNGG	3 cut(s)	310, 376, 389
SetI	ASST	6 cut(s)	127, 204, 240, 337, 343, 380
SfaNI	GCATC	2 cut(s)	147, 252
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	212, 221
StyD4I	CCNGG	3 cut(s)	308, 374, 387
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	3 cut(s)	127, 240, 337
TasI	AATT	2 cut(s)	212, 221
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	141, 216
Tru9I	TTAA	2 cut(s)	141, 216
TseFI	GTSAC	3 cut(s)	68, 148, 358
TseI	GCWGC	2 cut(s)	338, 384
Tsp45I	GTSAC	3 cut(s)	68, 148, 358
XapI	RAATTY	2 cut(s)	212, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.