Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Reverse (-)

22116306 .. 22118118

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28021.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACGACAAGACAAGCAGCAGCGGTGGGGAAGATGAAGTGCATATCCTGTCTGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAAGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGTCCAAGGTCGCCTTCCTCAAATTCTCCACTCGCTCCCTTCACCCCACTCCCTTCTCCGACGTCGTTTTGCTCGCCTCCGACGATCCCTCCACCGCCGTCCCCGTCCCTGCCCATAAAGCCGTTTTGGCGAGTCGTTCACCGGTGTTCAGAGCAATGCTTGAGAATGAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGAGATGTGTCCTACGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACGGCCGAGGCATGTCTCGATGAGGAAATGGCCTGCCACCTTCTGATATTGGCCGAGAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTCAACTGGGACAACTCTATTGTGAGCTACACCTTTGCACACCAGCACAATGCTAAGCATGTCGTTGATGCGGCGCTGACGTGGATCACGGACAACATGGACAAGCTTACTACACGAGAGGAGTACATGGAGCTGGTGCAGAAGGATCCACGGCTCGTGGTGGAAGTCTATGAGGCTTATCTATCGAAACAGATTAACACTGCAGCACAGAAGGATTCTGCCGGACGAGGAGGTGTCAAGCCTCCCCCCGCCAGGACCTCAGATGATTCATCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

264

Amino Acids

29.49

Weight (kDa)

5.1

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	67 - 171	4.5e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccII	CGCG	1 cut(s)	135
AciI	CCGC	4 cut(s)	23, 246, 584, 762
AclWI	GGATC	4 cut(s)	230, 605, 653, 666
AcoI	YGGCCR	2 cut(s)	405, 453
AcsI	RAATTY	1 cut(s)	173
AcvI	CACGTG	2 cut(s)	71, 84
AcyI	GRCGYC	2 cut(s)	75, 213
AfaI	GTAC	2 cut(s)	464, 638
AfiI	CCNNNNNNNGG	2 cut(s)	403, 765
AgeI	ACCGGT	1 cut(s)	292
AhdI	GACNNNNNGTC	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	2 cut(s)	465, 764
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	5 cut(s)	127, 514, 540, 619, 646
AluI	AGCT	5 cut(s)	127, 514, 540, 619, 646
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	107, 422
AlwI	GGATC	4 cut(s)	230, 605, 653, 666
AoxI	GGCC	4 cut(s)	105, 405, 432, 453
ApeKI	GCWGC	4 cut(s)	17, 20, 472, 716
ApoI	RAATTY	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	135, 589
AspS9I	GGNCC	1 cut(s)	768
AsuHPI	GGTGA	2 cut(s)	185, 282
AvaII	GGWCC	1 cut(s)	768
BamHI	GGATCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	2 cut(s)	627, 668
BbrPI	CACGTG	2 cut(s)	71, 84
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	29, 32, 484, 728
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	4 cut(s)	233, 257, 420, 680
BciT130I	CCWGG	2 cut(s)	467, 766
BcoDI	GTCTC	2 cut(s)	107, 422
BfmI	CTRYAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	590
BglI	GCCNNNNNGGC	2 cut(s)	278, 339
BisI	GCNGC	5 cut(s)	18, 21, 473, 585, 717
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	5 cut(s)	19, 22, 474, 586, 718
Bme1390I	CCNGG	2 cut(s)	467, 766
Bme18I	GGWCC	1 cut(s)	768
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	768
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	2 cut(s)	467, 766
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	3 cut(s)	361, 484, 571
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	4 cut(s)	113, 134, 332, 464
BsaAI	YACGTR	2 cut(s)	71, 84
BsaHI	GRCGYC	2 cut(s)	75, 213
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	117, 156, 408, 662
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 765
Bse118I	RCCGGY	2 cut(s)	77, 292
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	467, 766
BseDI	CCNNGG	4 cut(s)	117, 156, 408, 662
BseLI	CCNNNNNNNGG	2 cut(s)	403, 765
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	326, 786
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	4 cut(s)	134, 137, 647, 756
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	4 cut(s)	29, 32, 484, 728
BsgI	GTGCAG	2 cut(s)	491, 671
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	4 cut(s)	107, 407, 434, 455
BshTI	ACCGGT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	78, 293, 735
BslFI	GGGAC	3 cut(s)	236, 242, 536
BslI	CCNNNNNNNGG	2 cut(s)	403, 765
BsmAI	GTCTC	2 cut(s)	107, 422
BsmFI	GGGAC	3 cut(s)	236, 242, 536
BsnI	GGCC	4 cut(s)	107, 407, 434, 455
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	138, 235, 351, 597, 658
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	4 cut(s)	23, 246, 584, 762
BspANI	GGCC	4 cut(s)	107, 407, 434, 455
BspCNI	CTCAG	2 cut(s)	327, 785
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	660
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	4 cut(s)	230, 605, 653, 666
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	2 cut(s)	77, 292
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	2 cut(s)	77, 292
BssECI	CCNNGG	4 cut(s)	117, 156, 408, 662
BssMI	GATC	5 cut(s)	138, 235, 351, 597, 658
BssNI	GRCGYC	2 cut(s)	75, 213
BssSI	CACGAG	2 cut(s)	627, 668
BssT1I	CCWWGG	1 cut(s)	156
Bst2BI	CACGAG	2 cut(s)	627, 668
Bst2UI	CCWGG	2 cut(s)	467, 766
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	2 cut(s)	75, 213
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstBAI	YACGTR	2 cut(s)	71, 84
BstC8I	GCNNGC	3 cut(s)	79, 225, 436
BstDEI	CTNAG	3 cut(s)	335, 567, 772
BstDSI	CCRYGG	1 cut(s)	662
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	2 cut(s)	135, 589
BstKTI	GATC	5 cut(s)	141, 238, 354, 600, 661
BstMAI	GTCTC	2 cut(s)	107, 422
BstMBI	GATC	5 cut(s)	138, 235, 351, 597, 658
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 93, 269, 278, 339, 380
BstNI	CCWGG	2 cut(s)	467, 766
BstNSI	RCATGY	2 cut(s)	417, 575
BstSCI	CCNGG	2 cut(s)	465, 764
BstSFI	CTRYAG	1 cut(s)	714
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	29, 32, 484, 728
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BstZI	CGGCCG	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	107, 407, 434, 455
BtgI	CCRYGG	1 cut(s)	662
BtrI	CACGTC	1 cut(s)	594
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	3 cut(s)	79, 225, 436
CfoI	GCGC	2 cut(s)	135, 589
Cfr10I	RCCGGY	2 cut(s)	77, 292
Cfr13I	GGNCC	1 cut(s)	768
CseI	GACGC	2 cut(s)	74, 83
CsiI	ACCWGGT	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	463, 637
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	4 cut(s)	414, 572, 610, 640
CviQI	GTAC	2 cut(s)	463, 637
DdeI	CTNAG	3 cut(s)	335, 567, 772
DpnI	GATC	5 cut(s)	140, 237, 353, 599, 660
DpnII	GATC	5 cut(s)	138, 235, 351, 597, 658
DriI	GACNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	2 cut(s)	405, 453
EagI	CGGCCG	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	768
Eco52I	CGGCCG	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	127
Eco72I	CACGTG	2 cut(s)	71, 84
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	768
EcoRII	CCWGG	2 cut(s)	465, 764
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	417, 575, 613, 643
FaiI	YATR	7 cut(s)	44, 267, 415, 573, 611, 641, 684
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	3 cut(s)	236, 242, 536
FatI	CATG	4 cut(s)	413, 571, 609, 639
FauI	CCCGC	1 cut(s)	769
Fnu4HI	GCNGC	5 cut(s)	18, 21, 473, 585, 717
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	5 cut(s)	18, 21, 473, 585, 717
GlaI	GCGC	2 cut(s)	134, 588
GluI	GCNGC	5 cut(s)	18, 21, 473, 585, 717
GsuI	CTGGAG	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	4 cut(s)	107, 407, 434, 455
HapII	CCGG	3 cut(s)	78, 293, 735
HgaI	GACGC	2 cut(s)	74, 83
HhaI	GCGC	2 cut(s)	135, 589
Hin1I	GRCGYC	2 cut(s)	75, 213
Hin1II	CATG	4 cut(s)	417, 575, 613, 643
Hin6I	GCGC	2 cut(s)	133, 587
HinP1I	GCGC	2 cut(s)	133, 587
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	3 cut(s)	283, 728, 779
HpaII	CCGG	3 cut(s)	78, 293, 735
HphI	GGTGA	2 cut(s)	185, 282
Hpy166II	GTNNAC	2 cut(s)	290, 391
Hpy188I	TCNGA	6 cut(s)	211, 232, 302, 356, 447, 775
Hpy188III	TCNNGA	3 cut(s)	53, 349, 419
Hpy8I	GTNNAC	2 cut(s)	290, 391
Hpy99I	CGWCG	5 cut(s)	68, 146, 215, 218, 236
HpyAV	CCTTC	7 cut(s)	175, 200, 214, 386, 452, 649, 718
HpyCH4IV	ACGT	4 cut(s)	70, 83, 213, 593
HpyCH4V	TGCA	6 cut(s)	42, 87, 472, 551, 652, 716
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 93, 269, 278, 339, 380
HpyF3I	CTNAG	3 cut(s)	335, 567, 772
HpySE526I	ACGT	4 cut(s)	70, 83, 213, 593
Hsp92I	GRCGYC	2 cut(s)	75, 213
Hsp92II	CATG	4 cut(s)	417, 575, 613, 643
HspAI	GCGC	2 cut(s)	133, 587
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	138, 235, 351, 597, 658
LmnI	GCTCC	3 cut(s)	124, 191, 643
Lsp1109I	GCAGC	4 cut(s)	29, 32, 484, 728
LweI	GCATC	3 cut(s)	361, 484, 571
MabI	ACCWGGT	1 cut(s)	465
MaeII	ACGT	4 cut(s)	70, 83, 213, 593
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	5 cut(s)	140, 237, 353, 599, 660
MboI	GATC	5 cut(s)	138, 235, 351, 597, 658
MboII	GAAGA	2 cut(s)	43, 113
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	234, 255
MroNI	GCCGGC	1 cut(s)	77
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	78, 293, 735
MspR9I	CCNGG	2 cut(s)	467, 766
MvaI	CCWGG	2 cut(s)	467, 766
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	6 cut(s)	74, 93, 269, 278, 339, 380
NaeI	GCCGGC	1 cut(s)	79
NdeII	GATC	5 cut(s)	138, 235, 351, 597, 658
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	4 cut(s)	417, 575, 613, 643
NlaIV	GGNNCC	1 cut(s)	660
NmeAIII	GCCGAG	2 cut(s)	433, 481
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	2 cut(s)	417, 575
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	728, 779
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	19, 22, 474, 586, 718
PleI	GAGTC	1 cut(s)	291
PmaCI	CACGTG	2 cut(s)	71, 84
PmlI	CACGTG	2 cut(s)	71, 84
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	2 cut(s)	71, 84
PpuMI	RGGWCCY	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	768
Psp6I	CCWGG	2 cut(s)	465, 764
PspCI	CACGTG	2 cut(s)	71, 84
PspGI	CCWGG	2 cut(s)	465, 764
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	1 cut(s)	768
PspPPI	RGGWCCY	1 cut(s)	768
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	464, 638
RsaNI	GTAC	2 cut(s)	463, 637
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	5 cut(s)	18, 21, 473, 585, 717
Sau3AI	GATC	5 cut(s)	138, 235, 351, 597, 658
Sau96I	GGNCC	1 cut(s)	768
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	467, 766
SduI	GDGCHC	1 cut(s)	129
SexAI	ACCWGGT	1 cut(s)	465
SfaNI	GCATC	3 cut(s)	361, 484, 571
SfcI	CTRYAG	1 cut(s)	714
SgrAI	CRCCGGYG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	768
SmlI	CTYRAG	4 cut(s)	128, 149, 311, 479
SmoI	CTYRAG	4 cut(s)	128, 149, 311, 479
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	4 cut(s)	23, 246, 584, 762
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	465, 764
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	4 cut(s)	73, 86, 216, 596
TaqI	TCGA	3 cut(s)	141, 420, 698
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	173
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	728, 779
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	4 cut(s)	17, 20, 472, 716
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	50, 771
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	768
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	2 cut(s)	417, 575
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.