Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Reverse (-)

57633071 .. 57634226

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG378100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGACGACAAGACAGGCGGCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGCCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCATTCCTCAAGTTCTCCACTCGCTCCCAACCCATCTCCTTCTCGGACGTCGTTTTGGTTGCCTCCCAGGATCCCTCCGCCGCAGGGCTCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGTCGTTCCCCGGTGTTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTGTCCTATGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCTTAATATTGGCCGAAAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCGCACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACGCGGGAGGAGTACATGGAGCTGGTGGAGAAAGATCCACGACTCGTGGTGGAAGTCTACGAGGCTTATCTGTCGAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTAGGTCCTGCAGTTAAGCCCCCACTCCGTGATCCCTTTAGTGATCTAGATTATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

270

Amino Acids

30.3

Weight (kDa)

4.91

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	68 - 175	1.6e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
Acc16I	TGCGCA	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	2 cut(s)	141, 640
AciI	CCGC	4 cut(s)	17, 246, 249, 640
AclWI	GGATC	4 cut(s)	233, 246, 665, 779
AcoI	YGGCCR	1 cut(s)	465
AcvI	CACGTG	2 cut(s)	77, 90
AcyI	GRCGYC	2 cut(s)	81, 216
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	2 cut(s)	476, 650
AfiI	CCNNNNNNNGG	3 cut(s)	252, 271, 436
AjnI	CCWGG	3 cut(s)	57, 234, 477
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	7 cut(s)	133, 317, 419, 526, 552, 631, 658
AluI	AGCT	7 cut(s)	133, 317, 419, 526, 552, 631, 658
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	4 cut(s)	233, 246, 665, 779
AoxI	GGCC	6 cut(s)	111, 159, 273, 282, 444, 465
ApeKI	GCWGC	3 cut(s)	484, 596, 728
AspLEI	GCGC	2 cut(s)	141, 565
AspS9I	GGNCC	2 cut(s)	274, 758
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	758
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	135, 258
BauI	CACGAG	2 cut(s)	680, 750
BbrPI	CACGTG	2 cut(s)	77, 90
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	496, 608, 740
BccI	CCATC	2 cut(s)	209, 328
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	59, 236, 479
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	800
BfmI	CTRYAG	2 cut(s)	726, 762
BglI	GCCNNNNNGGC	3 cut(s)	281, 290, 351
BisI	GCNGC	5 cut(s)	18, 249, 485, 597, 729
BlsI	GCNGC	5 cut(s)	19, 250, 486, 598, 730
Bme1390I	CCNGG	4 cut(s)	59, 236, 305, 479
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	2 cut(s)	274, 758
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	4 cut(s)	59, 236, 305, 479
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	4 cut(s)	29, 373, 496, 583
BmuI	ACTGGG	1 cut(s)	541
BpuEI	CTTGAG	5 cut(s)	119, 140, 161, 344, 476
BpuMI	CCSGG	1 cut(s)	305
BsaAI	YACGTR	2 cut(s)	77, 90
BsaHI	GRCGYC	2 cut(s)	81, 216
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	123, 162, 234, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 271, 436
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	536
BseBI	CCWGG	3 cut(s)	59, 236, 479
BseDI	CCNNGG	4 cut(s)	123, 162, 234, 303
BseLI	CCNNNNNNNGG	3 cut(s)	252, 271, 436
BseMII	CTCAG	2 cut(s)	338, 411
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	4 cut(s)	122, 140, 143, 659
BseXI	GCAGC	3 cut(s)	496, 608, 740
BsgI	GTGCAG	2 cut(s)	503, 732
Bsh1236I	CGCG	2 cut(s)	141, 640
BshFI	GGCC	6 cut(s)	113, 161, 275, 284, 446, 467
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	84, 272, 305
BslFI	GGGAC	2 cut(s)	248, 548
BslI	CCNNNNNNNGG	3 cut(s)	252, 271, 436
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	248, 548
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	6 cut(s)	113, 161, 275, 284, 446, 467
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	135, 258
Bsp143I	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
BspACI	CCGC	4 cut(s)	17, 246, 249, 640
BspANI	GGCC	6 cut(s)	113, 161, 275, 284, 446, 467
BspCNI	CTCAG	2 cut(s)	339, 412
BspFNI	CGCG	2 cut(s)	141, 640
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	2 cut(s)	730, 766
BspPI	GGATC	4 cut(s)	233, 246, 665, 779
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	4 cut(s)	123, 162, 234, 303
BssMI	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
BssNI	GRCGYC	2 cut(s)	81, 216
BssSI	CACGAG	2 cut(s)	680, 750
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	2 cut(s)	680, 750
Bst2UI	CCWGG	3 cut(s)	59, 236, 479
BstACI	GRCGYC	2 cut(s)	81, 216
BstAPI	GCANNNNNTGC	2 cut(s)	54, 99
BstBAI	YACGTR	2 cut(s)	77, 90
BstC8I	GCNNGC	2 cut(s)	85, 448
BstDEI	CTNAG	2 cut(s)	347, 420
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstFNI	CGCG	2 cut(s)	141, 640
BstHHI	GCGC	2 cut(s)	141, 565
BstKTI	GATC	8 cut(s)	147, 241, 366, 612, 673, 720, 787, 799
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 80, 99, 167, 281, 290, 351, 392, 637
BstNI	CCWGG	3 cut(s)	59, 236, 479
BstSCI	CCNGG	4 cut(s)	57, 234, 303, 477
BstSFI	CTRYAG	2 cut(s)	726, 762
BstUI	CGCG	2 cut(s)	141, 640
BstV1I	GCAGC	3 cut(s)	496, 608, 740
BstX2I	RGATCY	2 cut(s)	238, 670
BstYI	RGATCY	2 cut(s)	238, 670
BsuRI	GGCC	6 cut(s)	113, 161, 275, 284, 446, 467
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	85, 448
CfoI	GCGC	2 cut(s)	141, 565
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	274, 758
CseI	GACGC	2 cut(s)	80, 89
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	475, 649
CviAII	CATG	2 cut(s)	622, 652
CviQI	GTAC	2 cut(s)	475, 649
DdeI	CTNAG	2 cut(s)	347, 420
DpnI	GATC	8 cut(s)	146, 240, 365, 611, 672, 719, 786, 798
DpnII	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
DraIII	CACNNNGTG	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	235
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	135, 258
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	758
Eco53kI	GAGCTC	1 cut(s)	133
Eco72I	CACGTG	2 cut(s)	77, 90
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	57, 234, 477
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	135, 258
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	625, 655
FaqI	GGGAC	2 cut(s)	248, 548
FatI	CATG	2 cut(s)	621, 651
FauI	CCCGC	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	5 cut(s)	18, 249, 485, 597, 729
FriOI	GRGCYC	2 cut(s)	135, 258
Fsp4HI	GCNGC	5 cut(s)	18, 249, 485, 597, 729
FspBI	CTAG	1 cut(s)	800
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	2 cut(s)	140, 564
GluI	GCNGC	5 cut(s)	18, 249, 485, 597, 729
HaeIII	GGCC	6 cut(s)	113, 161, 275, 284, 446, 467
HapII	CCGG	3 cut(s)	84, 272, 305
HgaI	GACGC	2 cut(s)	80, 89
HhaI	GCGC	2 cut(s)	141, 565
Hin1I	GRCGYC	2 cut(s)	81, 216
Hin1II	CATG	2 cut(s)	625, 655
Hin6I	GCGC	2 cut(s)	139, 563
HinP1I	GCGC	2 cut(s)	139, 563
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	4 cut(s)	295, 328, 678, 740
HpaII	CCGG	3 cut(s)	84, 272, 305
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	403, 694
Hpy188I	TCNGA	3 cut(s)	214, 314, 333
Hpy188III	TCNNGA	2 cut(s)	361, 800
Hpy8I	GTNNAC	2 cut(s)	403, 694
Hpy99I	CGWCG	3 cut(s)	74, 152, 221
HpyAV	CCTTC	2 cut(s)	217, 398
HpyCH4IV	ACGT	3 cut(s)	76, 89, 216
HpyCH4V	TGCA	7 cut(s)	48, 93, 484, 596, 728, 749, 764
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 80, 99, 167, 281, 290, 351, 392, 637
HpyF3I	CTNAG	2 cut(s)	347, 420
HpySE526I	ACGT	3 cut(s)	76, 89, 216
Hsp92I	GRCGYC	2 cut(s)	81, 216
Hsp92II	CATG	2 cut(s)	625, 655
HspAI	GCGC	2 cut(s)	139, 563
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
LmnI	GCTCC	3 cut(s)	130, 197, 655
Lsp1109I	GCAGC	3 cut(s)	496, 608, 740
LweI	GCATC	4 cut(s)	29, 373, 496, 583
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	1 cut(s)	800
MaeII	ACGT	3 cut(s)	76, 89, 216
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	8 cut(s)	146, 240, 365, 611, 672, 719, 786, 798
MboI	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
MboII	GAAGA	2 cut(s)	49, 735
MflI	RGATCY	2 cut(s)	238, 670
MhlI	GDGCHC	2 cut(s)	135, 258
MlyI	GAGTC	2 cut(s)	304, 672
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	2 cut(s)	458, 768
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	84, 272, 305
MspR9I	CCNGG	4 cut(s)	59, 236, 305, 479
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	3 cut(s)	59, 236, 479
MvnI	CGCG	2 cut(s)	141, 640
MwoI	GCNNNNNNNGC	9 cut(s)	54, 80, 99, 167, 281, 290, 351, 392, 637
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	625, 655
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	77
NsbI	TGCGCA	1 cut(s)	564
PctI	GAATGC	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	328, 740
PkrI	GCNGC	5 cut(s)	19, 250, 486, 598, 730
PleI	GAGTC	2 cut(s)	303, 672
PmaCI	CACGTG	2 cut(s)	77, 90
PmlI	CACGTG	2 cut(s)	77, 90
PpsI	GAGTC	2 cut(s)	303, 672
Ppu21I	YACGTR	2 cut(s)	77, 90
PpuMI	RGGWCCY	1 cut(s)	758
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	3 cut(s)	57, 234, 477
PspCI	CACGTG	2 cut(s)	77, 90
PspGI	CCWGG	3 cut(s)	57, 234, 477
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	274, 758
PspPPI	RGGWCCY	1 cut(s)	758
PstI	CTGCAG	2 cut(s)	730, 766
PsuI	RGATCY	2 cut(s)	238, 670
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	476, 650
RsaNI	GTAC	2 cut(s)	475, 649
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	458, 768
SatI	GCNGC	5 cut(s)	18, 249, 485, 597, 729
Sau3AI	GATC	8 cut(s)	144, 238, 363, 609, 670, 717, 784, 796
Sau96I	GGNCC	2 cut(s)	274, 758
SchI	GAGTC	2 cut(s)	304, 672
ScrFI	CCNGG	4 cut(s)	59, 236, 305, 479
SduI	GDGCHC	2 cut(s)	135, 258
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	4 cut(s)	29, 373, 496, 583
SfcI	CTRYAG	2 cut(s)	726, 762
SfiI	GGCCNNNNNGGCC	1 cut(s)	281
SinI	GGWCC	1 cut(s)	758
SmlI	CTYRAG	5 cut(s)	134, 155, 176, 323, 491
SmoI	CTYRAG	5 cut(s)	134, 155, 176, 323, 491
SsiI	CCGC	4 cut(s)	17, 246, 249, 640
SspI	AATATT	2 cut(s)	462, 546
SspMI	CTAG	1 cut(s)	800
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	57, 234, 303, 477
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	3 cut(s)	79, 92, 219
TaqI	TCGA	3 cut(s)	147, 432, 710
TaqII	GACCGA	1 cut(s)	137
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	2 cut(s)	20, 251
TfiI	GAWTC	2 cut(s)	328, 740
Tru1I	TTAA	2 cut(s)	458, 768
Tru9I	TTAA	2 cut(s)	458, 768
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	3 cut(s)	484, 596, 728
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	2 cut(s)	250, 770
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	758
XagI	CCTNNNNNAGG	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	1 cut(s)	800
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.