Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

40644167 .. 40645375

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G488200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAGTGCATATCTTGCGAGGGCAGATACGACGGAGACGACGCCGGCACTTGCAAGCAGTGCCACGAGGACCACAAGGCCAAGGTTGCTTTTCTCACCACGACCCATCCATCTTCCTTCTCTGACATCTTTCTGTTTGCCTCCGACGACAAAGAGGCCGCTAGACCCGTTCCGGCCCACAAGGCCGTTTTGGTGAGCCGTTCTCCGGTGTTGAGAGCTATGCTTGAAAATGAGATGGAAGAAAGCCGGAGCGGCACCATCCAGATTGGCGAAGTGTCCTACGGCGCCCTTTATACCTTTGTGAACTACCTATACACAGCTGAGGTATGCCTTGACAAGCAATTGGCATGTGACCTCCTAGTAATGGCTGAAATATACCAGGTGCAACACCTCAAAAACTACTGCCAGAAGTTCTTGGTGTCCAACCTCAACTTGGACAATTCACTTTTGACGTACACCTTTGCGCACCAGCATAACGCTAAGCCGGTCATCCATGCAGCCTTGACGTTGATCATAGACAACATGGACAAACTTACTGCCCGGGAAGAGTACGCTGAACTAAAGGAGAAAGATCCACAACTTGTATTTGAAATCTATGAAGCCTATCTCTCTAAACAAGTTAATAAAGCAGCAGCAGAGAAGGCAGTGGCGAAGCTAGAAGCTAATATGTATGAGGGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

228

Amino Acids

25.54

Weight (kDa)

5.38

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	254, 284
AccBSI	CCGCTC	1 cut(s)	252
AciI	CCGC	2 cut(s)	159, 252
AclWI	GGATC	1 cut(s)	566
AcyI	GRCGYC	2 cut(s)	42, 285
AfaI	GTAC	2 cut(s)	455, 551
AfiI	CCNNNNNNNGG	3 cut(s)	205, 364, 433
AgsI	TTSAA	2 cut(s)	227, 590
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	4 cut(s)	218, 320, 655, 662
AluI	AGCT	4 cut(s)	218, 320, 655, 662
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	5 cut(s)	78, 156, 174, 183, 676
ApeKI	GCWGC	3 cut(s)	497, 629, 632
AspLEI	GCGC	2 cut(s)	287, 466
AspS9I	GGNCC	3 cut(s)	70, 175, 676
AsuC2I	CCSGG	2 cut(s)	541, 542
AsuHPI	GGTGA	2 cut(s)	88, 205
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	254, 284
BauI	CACGAG	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	509, 641, 644
BccI	CCATC	4 cut(s)	114, 118, 229, 266
BceAI	ACGGC	3 cut(s)	170, 183, 298
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	541, 542
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	3 cut(s)	162, 359, 656
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	2 cut(s)	182, 252
BisI	GCNGC	5 cut(s)	159, 253, 498, 630, 633
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	5 cut(s)	160, 254, 499, 631, 634
Bme1390I	CCNGG	3 cut(s)	380, 541, 542
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	3 cut(s)	70, 175, 676
BmiI	GGNNCC	2 cut(s)	256, 286
BmrFI	CCNGG	3 cut(s)	380, 541, 542
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	541, 542
BsaHI	GRCGYC	2 cut(s)	42, 285
BsaJI	CCNNGG	2 cut(s)	81, 540
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 364, 433
Bse118I	RCCGGY	2 cut(s)	44, 484
Bse1I	ACTGG	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	81, 540
BseGI	GGATG	3 cut(s)	106, 258, 489
BseLI	CCNNNNNNNGG	3 cut(s)	205, 364, 433
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	509, 641, 644
BshFI	GGCC	5 cut(s)	80, 158, 176, 185, 678
BshNI	GGYRCC	2 cut(s)	254, 284
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	6 cut(s)	45, 173, 206, 247, 485, 541
BslI	CCNNNNNNNGG	3 cut(s)	205, 364, 433
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	5 cut(s)	80, 158, 176, 185, 678
BsoBI	CYCGRG	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	510, 571
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	159, 252
BspANI	GGCC	5 cut(s)	80, 158, 176, 185, 678
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	256, 286
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	2 cut(s)	254, 284
BsrBI	CCGCTC	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	44, 484
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	2 cut(s)	44, 484
BssECI	CCNNGG	2 cut(s)	81, 540
BssMI	GATC	2 cut(s)	510, 571
BssNI	GRCGYC	2 cut(s)	42, 285
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	2 cut(s)	42, 285
BstAPI	GCANNNNNTGC	2 cut(s)	15, 60
BstC8I	GCNNGC	2 cut(s)	46, 56
BstDEI	CTNAG	2 cut(s)	321, 480
BstF5I	GGATG	3 cut(s)	106, 258, 489
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	287, 466
BstKTI	GATC	2 cut(s)	513, 574
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	510, 571
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 60, 86, 182, 252, 641
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	3 cut(s)	378, 539, 540
BstV1I	GCAGC	3 cut(s)	509, 641, 644
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	5 cut(s)	80, 158, 176, 185, 678
BtsCI	GGATG	3 cut(s)	106, 258, 489
BtsI	GCAGTG	2 cut(s)	65, 651
BtsIMutI	CAGTG	2 cut(s)	65, 651
Cac8I	GCNNGC	2 cut(s)	46, 56
CfoI	GCGC	2 cut(s)	287, 466
Cfr10I	RCCGGY	2 cut(s)	44, 484
Cfr13I	GGNCC	3 cut(s)	70, 175, 676
Cfr9I	CCCGGG	1 cut(s)	540
CseI	GACGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	454, 550
CviAII	CATG	3 cut(s)	348, 494, 523
CviQI	GTAC	2 cut(s)	454, 550
DdeI	CTNAG	2 cut(s)	321, 480
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	2 cut(s)	512, 573
DpnII	GATC	2 cut(s)	510, 571
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	351, 497, 526
FatI	CATG	3 cut(s)	347, 493, 522
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	5 cut(s)	159, 253, 498, 630, 633
FokI	GGATG	3 cut(s)	93, 245, 476
Fsp4HI	GCNGC	5 cut(s)	159, 253, 498, 630, 633
FspBI	CTAG	3 cut(s)	162, 359, 656
FspI	TGCGCA	1 cut(s)	465
GlaI	GCGC	2 cut(s)	286, 465
GluI	GCNGC	5 cut(s)	159, 253, 498, 630, 633
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	80, 158, 176, 185, 678
HapII	CCGG	6 cut(s)	45, 173, 206, 247, 485, 541
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	287, 466
Hin1I	GRCGYC	2 cut(s)	42, 285
Hin1II	CATG	3 cut(s)	351, 497, 526
Hin6I	GCGC	2 cut(s)	285, 464
HinP1I	GCGC	2 cut(s)	285, 464
HpaII	CCGG	6 cut(s)	45, 173, 206, 247, 485, 541
HphI	GGTGA	2 cut(s)	88, 205
Hpy166II	GTNNAC	2 cut(s)	304, 456
Hpy188I	TCNGA	2 cut(s)	124, 145
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	304, 456
Hpy99I	CGWCG	3 cut(s)	35, 44, 149
HpyAV	CCTTC	2 cut(s)	127, 634
HpyCH4IV	ACGT	2 cut(s)	452, 506
HpyCH4V	TGCA	4 cut(s)	9, 54, 385, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 60, 86, 182, 252, 641
HpyF3I	CTNAG	2 cut(s)	321, 480
HpySE526I	ACGT	2 cut(s)	452, 506
Hsp92I	GRCGYC	2 cut(s)	42, 285
Hsp92II	CATG	3 cut(s)	351, 497, 526
HspAI	GCGC	2 cut(s)	285, 464
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	510, 571
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	3 cut(s)	509, 641, 644
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	3 cut(s)	162, 359, 656
MaeII	ACGT	2 cut(s)	452, 506
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	512, 573
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	2 cut(s)	510, 571
MboII	GAAGA	3 cut(s)	105, 251, 557
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	1 cut(s)	571
MluCI	AATT	2 cut(s)	341, 439
Mly113I	GGCGCC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	168, 447
MnlI	CCTC	9 cut(s)	13, 61, 148, 151, 316, 365, 401, 437, 667
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	6 cut(s)	45, 173, 206, 247, 485, 541
MspR9I	CCNGG	3 cut(s)	380, 541, 542
MunI	CAATTG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	6 cut(s)	15, 60, 86, 182, 252, 641
NaeI	GCCGGC	1 cut(s)	46
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	541, 542
NdeII	GATC	2 cut(s)	510, 571
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	351, 497, 526
NlaIV	GGNNCC	2 cut(s)	256, 286
NmuCI	GTSAC	1 cut(s)	350
NsbI	TGCGCA	1 cut(s)	465
NspI	RCATGY	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	160, 254, 499, 631, 634
PluTI	GGCGCC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	256, 286
PspPI	GGNCC	3 cut(s)	70, 175, 676
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	455, 551
RsaNI	GTAC	2 cut(s)	454, 550
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	5 cut(s)	159, 253, 498, 630, 633
Sau3AI	GATC	2 cut(s)	510, 571
Sau96I	GGNCC	3 cut(s)	70, 175, 676
ScrFI	CCNGG	3 cut(s)	380, 541, 542
SexAI	ACCWGGT	1 cut(s)	378
SfiI	GGCCNNNNNGGCC	1 cut(s)	182
SfoI	GGCGCC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	70
SmaI	CCCGGG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	341, 439
SsiI	CCGC	2 cut(s)	159, 252
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	3 cut(s)	162, 359, 656
StyD4I	CCNGG	3 cut(s)	378, 539, 540
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	2 cut(s)	455, 509
TasI	AATT	2 cut(s)	341, 439
TauI	GCSGC	2 cut(s)	161, 255
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	65, 651
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	3 cut(s)	497, 629, 632
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	17, 612
TspGWI	ACGGA	1 cut(s)	48
TspMI	CCCGGG	1 cut(s)	540
TspRI	CASTG	2 cut(s)	65, 651
VpaK11BI	GGWCC	1 cut(s)	70
XceI	RCATGY	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmaI	CCCGGG	1 cut(s)	540
XspI	CTAG	3 cut(s)	162, 359, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.