Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Reverse (-)

61418983 .. 61420148

Gene Structure 1166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG386100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGACGACAAGACAGGCGGCATCATCATCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGCCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTCCACTCGCTCCCAACCCATCTCCTTCTCCGACGTCGTTTTGGTTGCCTCCCAGGATCCCTCCGCCGCAGGGCCCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGCCGTTCCCCGGTGTTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTGTCCTATGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCCTAATATTGGCCGAAAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCACACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACGCGTGAGGAGTACATGGAGCTGGTGGAGAAAGATCCACGACTCGTGGTGGAAGTCTACGAGGCTTATCTGTCGAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTAGGTCCTGCAGTTAAGCCCCCCCTCCGTGATGCCTTCAGTGATCTAGATTATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

273

Amino Acids

30.52

Weight (kDa)

4.91

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	71 - 178	1.6e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	2 cut(s)	150, 649
AciI	CCGC	3 cut(s)	17, 255, 258
AclWI	GGATC	3 cut(s)	242, 255, 674
AcoI	YGGCCR	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	784
AcvI	CACGTG	2 cut(s)	86, 99
AcyI	GRCGYC	2 cut(s)	90, 225
AfaI	GTAC	2 cut(s)	485, 659
AfiI	CCNNNNNNNGG	5 cut(s)	261, 280, 313, 445, 472
AflIII	ACRYGT	1 cut(s)	647
AjnI	CCWGG	3 cut(s)	66, 243, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	7 cut(s)	142, 326, 428, 535, 561, 640, 667
AluI	AGCT	7 cut(s)	142, 326, 428, 535, 561, 640, 667
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	242, 255, 674
AoxI	GGCC	7 cut(s)	120, 168, 263, 282, 291, 453, 474
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	493, 605, 737
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	4 cut(s)	263, 264, 283, 767
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	247
BanII	GRGCYC	2 cut(s)	144, 267
BauI	CACGAG	2 cut(s)	689, 759
BbrPI	CACGTG	2 cut(s)	86, 99
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	505, 617, 749
BccI	CCATC	2 cut(s)	218, 337
BceAI	ACGGC	2 cut(s)	278, 291
BciT130I	CCWGG	3 cut(s)	68, 245, 488
BclI	TGATCA	1 cut(s)	618
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	2 cut(s)	735, 771
BglI	GCCNNNNNGGC	3 cut(s)	290, 299, 360
BisI	GCNGC	5 cut(s)	18, 258, 494, 606, 738
BlsI	GCNGC	5 cut(s)	19, 259, 495, 607, 739
Bme1390I	CCNGG	4 cut(s)	68, 245, 314, 488
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	4 cut(s)	263, 264, 283, 767
BmiI	GGNNCC	2 cut(s)	249, 265
BmrFI	CCNGG	4 cut(s)	68, 245, 314, 488
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	5 cut(s)	29, 382, 505, 592, 784
BmuI	ACTGGG	1 cut(s)	550
BpuEI	CTTGAG	5 cut(s)	128, 149, 170, 353, 485
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	2 cut(s)	86, 99
BsaHI	GRCGYC	2 cut(s)	90, 225
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	132, 171, 243, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	261, 280, 313, 445, 472
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	545
BseBI	CCWGG	3 cut(s)	68, 245, 488
BseDI	CCNNGG	4 cut(s)	132, 171, 243, 312
BseLI	CCNNNNNNNGG	5 cut(s)	261, 280, 313, 445, 472
BseMII	CTCAG	2 cut(s)	347, 420
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	4 cut(s)	131, 149, 152, 668
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	505, 617, 749
BsgI	GTGCAG	2 cut(s)	512, 741
Bsh1236I	CGCG	2 cut(s)	150, 649
BshFI	GGCC	7 cut(s)	122, 170, 265, 284, 293, 455, 476
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	93, 281, 314
BslFI	GGGAC	2 cut(s)	257, 557
BslI	CCNNNNNNNGG	5 cut(s)	261, 280, 313, 445, 472
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	257, 557
BsnI	GGCC	7 cut(s)	122, 170, 265, 284, 293, 455, 476
Bso31I	GGTCTC	1 cut(s)	122
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	144, 267
Bsp143I	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
BspACI	CCGC	3 cut(s)	17, 255, 258
BspANI	GGCC	7 cut(s)	122, 170, 265, 284, 293, 455, 476
BspCNI	CTCAG	2 cut(s)	348, 421
BspFNI	CGCG	2 cut(s)	150, 649
BspLI	GGNNCC	2 cut(s)	249, 265
BspMAI	CTGCAG	2 cut(s)	739, 775
BspPI	GGATC	3 cut(s)	242, 255, 674
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	132, 171, 243, 312
BssMI	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
BssNI	GRCGYC	2 cut(s)	90, 225
BssSI	CACGAG	2 cut(s)	689, 759
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	2 cut(s)	689, 759
Bst2UI	CCWGG	3 cut(s)	68, 245, 488
BstACI	GRCGYC	2 cut(s)	90, 225
BstAPI	GCANNNNNTGC	2 cut(s)	63, 108
BstBAI	YACGTR	2 cut(s)	86, 99
BstC8I	GCNNGC	3 cut(s)	94, 304, 457
BstDEI	CTNAG	2 cut(s)	356, 429
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstFNI	CGCG	2 cut(s)	150, 649
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	7 cut(s)	156, 250, 375, 621, 682, 729, 808
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
BstMWI	GCNNNNNNNGC	9 cut(s)	63, 89, 108, 176, 290, 299, 360, 401, 646
BstNI	CCWGG	3 cut(s)	68, 245, 488
BstSCI	CCNGG	4 cut(s)	66, 243, 312, 486
BstSFI	CTRYAG	2 cut(s)	735, 771
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	2 cut(s)	150, 649
BstV1I	GCAGC	3 cut(s)	505, 617, 749
BstX2I	RGATCY	2 cut(s)	247, 679
BstYI	RGATCY	2 cut(s)	247, 679
BsuRI	GGCC	7 cut(s)	122, 170, 265, 284, 293, 455, 476
BtsIMutI	CAGTG	2 cut(s)	45, 808
Cac8I	GCNNGC	3 cut(s)	94, 304, 457
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	4 cut(s)	263, 264, 283, 767
CseI	GACGC	2 cut(s)	89, 98
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	484, 658
CviAII	CATG	2 cut(s)	631, 661
CviQI	GTAC	2 cut(s)	484, 658
DdeI	CTNAG	2 cut(s)	356, 429
DpnI	GATC	7 cut(s)	155, 249, 374, 620, 681, 728, 807
DpnII	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
EaeI	YGGCCR	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	144, 267
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	767
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	784
Eco72I	CACGTG	2 cut(s)	86, 99
EcoICRI	GAGCTC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO109I	RGGNCCY	3 cut(s)	263, 264, 767
EcoRII	CCWGG	3 cut(s)	66, 243, 486
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	144, 267
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	634, 664
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	2 cut(s)	257, 557
FatI	CATG	2 cut(s)	630, 660
FbaI	TGATCA	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	5 cut(s)	18, 258, 494, 606, 738
FriOI	GRGCYC	2 cut(s)	144, 267
Fsp4HI	GCNGC	5 cut(s)	18, 258, 494, 606, 738
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	5 cut(s)	18, 258, 494, 606, 738
HaeIII	GGCC	7 cut(s)	122, 170, 265, 284, 293, 455, 476
HapII	CCGG	3 cut(s)	93, 281, 314
HgaI	GACGC	2 cut(s)	89, 98
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	2 cut(s)	90, 225
Hin1II	CATG	2 cut(s)	634, 664
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	3 cut(s)	337, 687, 749
HpaII	CCGG	3 cut(s)	93, 281, 314
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	412, 703
Hpy188I	TCNGA	3 cut(s)	223, 323, 342
Hpy188III	TCNNGA	2 cut(s)	370, 809
Hpy8I	GTNNAC	2 cut(s)	412, 703
Hpy99I	CGWCG	4 cut(s)	83, 161, 227, 230
HpyAV	CCTTC	4 cut(s)	190, 226, 407, 808
HpyCH4IV	ACGT	3 cut(s)	85, 98, 225
HpyCH4V	TGCA	8 cut(s)	57, 102, 493, 572, 605, 737, 758, 773
HpyF10VI	GCNNNNNNNGC	9 cut(s)	63, 89, 108, 176, 290, 299, 360, 401, 646
HpyF3I	CTNAG	2 cut(s)	356, 429
HpySE526I	ACGT	3 cut(s)	85, 98, 225
Hsp92I	GRCGYC	2 cut(s)	90, 225
Hsp92II	CATG	2 cut(s)	634, 664
HspAI	GCGC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
LmnI	GCTCC	3 cut(s)	139, 206, 664
Lsp1109I	GCAGC	3 cut(s)	505, 617, 749
LweI	GCATC	5 cut(s)	29, 382, 505, 592, 784
MabI	ACCWGGT	1 cut(s)	486
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	3 cut(s)	85, 98, 225
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	7 cut(s)	155, 249, 374, 620, 681, 728, 807
MboI	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
MboII	GAAGA	2 cut(s)	58, 744
MflI	RGATCY	2 cut(s)	247, 679
MhlI	GDGCHC	2 cut(s)	144, 267
MluI	ACGCGT	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	681
MmeI	TCCRAC	1 cut(s)	246
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	3 cut(s)	93, 281, 314
MspR9I	CCNGG	4 cut(s)	68, 245, 314, 488
MvaI	CCWGG	3 cut(s)	68, 245, 488
MvnI	CGCG	2 cut(s)	150, 649
MwoI	GCNNNNNNNGC	9 cut(s)	63, 89, 108, 176, 290, 299, 360, 401, 646
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	634, 664
NlaIV	GGNNCC	2 cut(s)	249, 265
NmuCI	GTSAC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	337, 749
PkrI	GCNGC	5 cut(s)	19, 259, 495, 607, 739
PleI	GAGTC	1 cut(s)	681
PmaCI	CACGTG	2 cut(s)	86, 99
PmlI	CACGTG	2 cut(s)	86, 99
PpsI	GAGTC	1 cut(s)	681
Ppu21I	YACGTR	2 cut(s)	86, 99
PpuMI	RGGWCCY	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	3 cut(s)	66, 243, 486
PspCI	CACGTG	2 cut(s)	86, 99
PspGI	CCWGG	3 cut(s)	66, 243, 486
PspN4I	GGNNCC	2 cut(s)	249, 265
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	263, 264, 283, 767
PspPPI	RGGWCCY	1 cut(s)	767
PstI	CTGCAG	2 cut(s)	739, 775
PsuI	RGATCY	2 cut(s)	247, 679
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	485, 659
RsaNI	GTAC	2 cut(s)	484, 658
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	5 cut(s)	18, 258, 494, 606, 738
Sau3AI	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
Sau96I	GGNCC	4 cut(s)	263, 264, 283, 767
SchI	GAGTC	1 cut(s)	681
ScrFI	CCNGG	4 cut(s)	68, 245, 314, 488
SduI	GDGCHC	2 cut(s)	144, 267
SexAI	ACCWGGT	1 cut(s)	486
SfaNI	GCATC	5 cut(s)	29, 382, 505, 592, 784
SfcI	CTRYAG	2 cut(s)	735, 771
SfiI	GGCCNNNNNGGCC	1 cut(s)	290
SinI	GGWCC	1 cut(s)	767
SmlI	CTYRAG	5 cut(s)	143, 164, 185, 332, 500
SmoI	CTYRAG	5 cut(s)	143, 164, 185, 332, 500
SsiI	CCGC	3 cut(s)	17, 255, 258
SspI	AATATT	2 cut(s)	471, 555
SspMI	CTAG	1 cut(s)	809
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	4 cut(s)	66, 243, 312, 486
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	3 cut(s)	88, 101, 228
TaqI	TCGA	3 cut(s)	156, 441, 719
TaqII	GACCGA	1 cut(s)	146
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	2 cut(s)	20, 260
TfiI	GAWTC	2 cut(s)	337, 749
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	2 cut(s)	45, 808
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	493, 605, 737
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	2 cut(s)	259, 779
TspRI	CASTG	2 cut(s)	45, 808
VpaK11BI	GGWCC	1 cut(s)	767
XagI	CCTNNNNNAGG	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	1 cut(s)	809
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.