Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Reverse (-)

6431161 .. 6435396

Gene Structure 4236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTCCACCGGAGGCTGAGGTGGGTGCGGTAATGGTGATGGCTCCTCCAACGCCGGGGACACCGGGAACACCGGGAGGACCGTTGATCACGGGGATGAGAGTGGATTCAATGTCGTTTGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTGATGGGATCAACTTGGGGTCAACATGACACATGCTTCACCGATTTTCCCTCTCCTGATGTCTCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCGACAGCCGGTCCAATCGTGAACCAGAAATACGATGGAGCAGAAACCCTAATCGGTAACGCTGCATGCGCAGGACTCGCAGTGATGATCATAATACTCTCAACAGGTCATATCTCAGGGGCTCACCTAAACCCATCACTGACCATAGCATTCGCTGCTCTAAGGCACTTCCCTTGGGCACACGTCCCTGCTTACATAGCGGCTCAAGTCTCAGCTTCCATTTGCGCTTCATTCGCACTTAAAGGAGTGTTCCATCCTTTTATGTCCGGTGGTGTCACTATTCCATCTGTTAGCCTTGGACAAGCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTTGTAACTGCCGTCGCTACCGACACTCGTGCCGTTGGAGAATTGGCAGGTATAGCCGTTGGAGCCACGGTCATGCTCAATATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCTGTGAGAACTCTAGGACCAGCCGTTGCATCAGGAAACTATAGGTCACTATGGGTGTATCTGGTGGCTCCTACACTTGGTGCCATATCTGGTGCAGCGGTCTACACAGGTGTTAAGCTTAACGATAGCGTGACTGACCCGCCTCGTCCGGTTAGGAGCTTTCGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015105 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015893 GO:0016020 GO:0016021 GO:0016328 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046685 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

304

Amino Acids

31.49

Weight (kDa)

8.65

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	74 - 283	2.7e-51	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	662
AccB1I	GGYRCC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	281
AciI	CCGC	5 cut(s)	29, 279, 479, 842, 884
AclWI	GGATC	2 cut(s)	175, 742
AdeI	CACNNNGTG	1 cut(s)	824
AfiI	CCNNNNNNNGG	4 cut(s)	56, 164, 728, 821
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	111
AhdI	GACNNNNNGTC	1 cut(s)	288
AjiI	CACGTC	1 cut(s)	463
AluBI	AGCT	4 cut(s)	238, 494, 862, 903
AluI	AGCT	4 cut(s)	238, 494, 862, 903
Alw26I	GTCTC	2 cut(s)	226, 493
AlwI	GGATC	2 cut(s)	175, 742
AoxI	GGCC	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	341, 434, 839
AspLEI	GCGC	2 cut(s)	350, 506
AspS9I	GGNCC	4 cut(s)	80, 290, 719, 761
AsuC2I	CCSGG	3 cut(s)	57, 66, 75
AsuHPI	GGTGA	5 cut(s)	49, 172, 190, 268, 395
AvaII	GGWCC	3 cut(s)	80, 290, 761
BaeGI	GKGCMC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	403
BauI	CACGAG	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	328, 421, 851
BccI	CCATC	7 cut(s)	34, 157, 308, 421, 540, 571, 730
BceAI	ACGGC	4 cut(s)	620, 641, 665, 752
BcgI	CGANNNNNNTGC	6 cut(s)	132, 166, 635, 669, 705, 739
BclI	TGATCA	3 cut(s)	87, 121, 366
BcnI	CCSGG	3 cut(s)	57, 66, 75
BcoDI	GTCTC	2 cut(s)	226, 493
BfaI	CTAG	2 cut(s)	710, 758
BfmI	CTRYAG	1 cut(s)	784
BfuAI	ACCTGC	1 cut(s)	662
BisI	GCNGC	4 cut(s)	342, 435, 480, 840
BlsI	GCNGC	4 cut(s)	343, 436, 481, 841
Bme1390I	CCNGG	3 cut(s)	57, 66, 75
Bme18I	GGWCC	3 cut(s)	80, 290, 761
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	4 cut(s)	80, 290, 719, 761
BmiI	GGNNCC	6 cut(s)	6, 45, 244, 688, 813, 826
BmrFI	CCNGG	3 cut(s)	57, 66, 75
BmsI	GCATC	2 cut(s)	134, 782
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	468, 614
BpuMI	CCSGG	3 cut(s)	57, 66, 75
BsaJI	CCNNGG	4 cut(s)	56, 452, 574, 690
BsaWI	WCCGGW	3 cut(s)	10, 545, 892
BsaXI	ACNNNNNCTCC	3 cut(s)	678, 708, 892
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 164, 728, 821
Bse118I	RCCGGY	2 cut(s)	157, 287
Bse1I	ACTGG	1 cut(s)	733
BseDI	CCNNGG	4 cut(s)	56, 452, 574, 690
BseGI	GGATG	2 cut(s)	102, 532
BseLI	CCNNNNNNNGG	4 cut(s)	56, 164, 728, 821
BseMII	CTCAG	3 cut(s)	9, 408, 504
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	2 cut(s)	36, 608
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	3 cut(s)	328, 421, 851
BsgI	GTGCAG	1 cut(s)	858
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	721
BshNI	GGYRCC	1 cut(s)	824
BsiSI	CCGG	8 cut(s)	11, 56, 65, 74, 158, 288, 546, 893
BslFI	GGGAC	2 cut(s)	73, 449
BslI	CCNNNNNNNGG	4 cut(s)	56, 164, 728, 821
BsmAI	GTCTC	2 cut(s)	226, 493
BsmFI	GGGAC	2 cut(s)	73, 449
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	721
Bsp1286I	GDGCHC	2 cut(s)	403, 460
Bsp143I	GATC	5 cut(s)	87, 121, 167, 366, 734
BspACI	CCGC	5 cut(s)	29, 279, 479, 842, 884
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	3 cut(s)	10, 407, 503
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	6 cut(s)	6, 45, 244, 688, 813, 826
BspMI	ACCTGC	1 cut(s)	662
BspPI	GGATC	2 cut(s)	175, 742
BspT107I	GGYRCC	1 cut(s)	824
BsrFI	RCCGGY	2 cut(s)	157, 287
BsrI	ACTGG	1 cut(s)	733
BssAI	RCCGGY	2 cut(s)	157, 287
BssECI	CCNNGG	4 cut(s)	56, 452, 574, 690
BssMI	GATC	5 cut(s)	87, 121, 167, 366, 734
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	2 cut(s)	452, 574
Bst2BI	CACGAG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	84, 694
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	155, 236, 346
BstDEI	CTNAG	4 cut(s)	18, 394, 440, 490
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	102, 532
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	350, 506
BstKTI	GATC	5 cut(s)	90, 124, 170, 369, 737
BstMAI	GTCTC	2 cut(s)	226, 493
BstMBI	GATC	5 cut(s)	87, 121, 167, 366, 734
BstMWI	GCNNNNNNNGC	7 cut(s)	347, 356, 434, 476, 512, 677, 686
BstNSI	RCATGY	2 cut(s)	195, 348
BstSCI	CCNGG	3 cut(s)	55, 64, 73
BstSFI	CTRYAG	1 cut(s)	784
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	328, 421, 851
BstX2I	RGATCY	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	721
BtgI	CCRYGG	1 cut(s)	690
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	102, 532
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 416
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	3 cut(s)	155, 236, 346
CfoI	GCGC	2 cut(s)	350, 506
Cfr10I	RCCGGY	2 cut(s)	157, 287
Cfr13I	GGNCC	4 cut(s)	80, 290, 719, 761
CviAII	CATG	4 cut(s)	185, 192, 345, 697
DdeI	CTNAG	4 cut(s)	18, 394, 440, 490
DpnI	GATC	5 cut(s)	89, 123, 169, 368, 736
DpnII	GATC	5 cut(s)	87, 121, 167, 366, 734
DraIII	CACNNNGTG	1 cut(s)	824
DriI	GACNNNNNGTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	452, 574
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	3 cut(s)	80, 290, 761
EcoT14I	CCWWGG	2 cut(s)	452, 574
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	452, 574
FaeI	CATG	4 cut(s)	188, 195, 348, 700
FaqI	GGGAC	2 cut(s)	73, 449
FatI	CATG	4 cut(s)	184, 191, 344, 696
FauI	CCCGC	1 cut(s)	891
FbaI	TGATCA	3 cut(s)	87, 121, 366
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	342, 435, 480, 840
FokI	GGATG	2 cut(s)	109, 519
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	4 cut(s)	342, 435, 480, 840
FspBI	CTAG	2 cut(s)	710, 758
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	2 cut(s)	349, 505
GluI	GCNGC	4 cut(s)	342, 435, 480, 840
HaeIII	GGCC	1 cut(s)	721
HapII	CCGG	8 cut(s)	11, 56, 65, 74, 158, 288, 546, 893
HhaI	GCGC	2 cut(s)	350, 506
Hin1II	CATG	4 cut(s)	188, 195, 348, 700
Hin6I	GCGC	2 cut(s)	348, 504
HinP1I	GCGC	2 cut(s)	348, 504
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HindIII	AAGCTT	2 cut(s)	236, 860
HinfI	GANTC	3 cut(s)	107, 354, 742
HpaII	CCGG	8 cut(s)	11, 56, 65, 74, 158, 288, 546, 893
HphI	GGTGA	5 cut(s)	49, 172, 190, 268, 395
Hpy166II	GTNNAC	3 cut(s)	182, 301, 847
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	5 cut(s)	215, 268, 298, 593, 777
Hpy8I	GTNNAC	3 cut(s)	182, 301, 847
Hpy99I	CGWCG	2 cut(s)	641, 912
HpyCH4III	ACNGT	2 cut(s)	84, 694
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	147, 344, 773, 839
HpyF10VI	GCNNNNNNNGC	7 cut(s)	347, 356, 434, 476, 512, 677, 686
HpyF3I	CTNAG	4 cut(s)	18, 394, 440, 490
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	188, 195, 348, 700
HspAI	GCGC	2 cut(s)	348, 504
Ksp22I	TGATCA	3 cut(s)	87, 121, 366
Kzo9I	GATC	5 cut(s)	87, 121, 167, 366, 734
LmnI	GCTCC	7 cut(s)	10, 49, 242, 317, 686, 817, 900
Lsp1109I	GCAGC	3 cut(s)	328, 421, 851
LweI	GCATC	2 cut(s)	134, 782
MaeI	CTAG	2 cut(s)	710, 758
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	5 cut(s)	335, 553, 628, 789, 874
MalI	GATC	5 cut(s)	89, 123, 169, 368, 736
MboI	GATC	5 cut(s)	87, 121, 167, 366, 734
MflI	RGATCY	1 cut(s)	734
MhlI	GDGCHC	2 cut(s)	403, 460
MluCI	AATT	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	3 cut(s)	74, 640, 664
MnlI	CCTC	9 cut(s)	7, 13, 57, 71, 150, 220, 236, 629, 897
MseI	TTAA	4 cut(s)	519, 858, 864, 913
MslI	CAYNNNNRTG	2 cut(s)	95, 695
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	8 cut(s)	11, 56, 65, 74, 158, 288, 546, 893
MspR9I	CCNGG	3 cut(s)	57, 66, 75
Mva1269I	GAATGC	1 cut(s)	428
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	7 cut(s)	347, 356, 434, 476, 512, 677, 686
NciI	CCSGG	3 cut(s)	57, 66, 75
NdeII	GATC	5 cut(s)	87, 121, 167, 366, 734
NlaIII	CATG	4 cut(s)	188, 195, 348, 700
NlaIV	GGNNCC	6 cut(s)	6, 45, 244, 688, 813, 826
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	3 cut(s)	553, 789, 874
NsbI	TGCGCA	1 cut(s)	349
NspI	RCATGY	2 cut(s)	195, 348
PaeI	GCATGC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	107, 742
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	343, 436, 481, 841
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspN4I	GGNNCC	6 cut(s)	6, 45, 244, 688, 813, 826
PspPI	GGNCC	4 cut(s)	80, 290, 719, 761
PsrI	GAACNNNNNNTAC	2 cut(s)	293, 325
PsuI	RGATCY	1 cut(s)	734
RseI	CAYNNNNRTG	2 cut(s)	95, 695
SaqAI	TTAA	4 cut(s)	519, 858, 864, 913
SatI	GCNGC	4 cut(s)	342, 435, 480, 840
Sau3AI	GATC	5 cut(s)	87, 121, 167, 366, 734
Sau96I	GGNCC	4 cut(s)	80, 290, 719, 761
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	57, 66, 75
SduI	GDGCHC	2 cut(s)	403, 460
SfaNI	GCATC	2 cut(s)	134, 782
SfcI	CTRYAG	1 cut(s)	784
SinI	GGWCC	3 cut(s)	80, 290, 761
SmiMI	CAYNNNNRTG	2 cut(s)	95, 695
SmlI	CTYRAG	2 cut(s)	483, 593
SmoI	CTYRAG	2 cut(s)	483, 593
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	665
SsiI	CCGC	5 cut(s)	29, 279, 479, 842, 884
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	2 cut(s)	710, 758
StyD4I	CCNGG	3 cut(s)	55, 64, 73
StyI	CCWWGG	2 cut(s)	452, 574
TaaI	ACNGT	2 cut(s)	84, 694
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	142, 725
TasI	AATT	1 cut(s)	665
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	107, 742
Tru1I	TTAA	4 cut(s)	519, 858, 864, 913
Tru9I	TTAA	4 cut(s)	519, 858, 864, 913
TscAI	CASTG	2 cut(s)	366, 423
TseFI	GTSAC	3 cut(s)	553, 789, 874
TseI	GCWGC	3 cut(s)	341, 434, 839
Tsp45I	GTSAC	3 cut(s)	553, 789, 874
TspDTI	ATGAA	5 cut(s)	253, 498, 589, 601, 755
TspRI	CASTG	2 cut(s)	366, 423
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	3 cut(s)	80, 290, 761
XceI	RCATGY	2 cut(s)	195, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	2 cut(s)	710, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.