Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Reverse (-)

4206599 .. 4207856

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCCAGAAACCAATTCCCCGTCGAGCGTCCATGCTCCTCATGTCACTTTGCTCCGGAAGCTTGGTGCCGAGTTTGTGGGGAGCTTCATCCTGATATTTTCAGCAGCAGCAGCCCCTATTGTGAACCAAAAGTATCAAGGTTCGGAGACGCTGCTAGGCAATGCGGCATGCGCAGGCCTAGCAGTGATGGCAGTGATTTTGTCCACAGGCCACATCTCCGGAGCACACCTAAACCCGTCTGTCACCATTGCTTTTGCAGCGTTTCGACACTTCCCATGGACCCAAGTTCCCCTCTACATAATAGCACAGGTTTCAGCGTCCATCTCTGCAAGTTTCGCTCTAAAGGGAGTTTTTCATCCATTCATGTCTGGTGGTGTAACGGTCCCATCTGTTAGCCATTGCCAAGCTTTTGCACTCGAGTTCATTGTCACTTTCATTCTCATGTTCACAGTCACTTCCGTTGCCACTGATACTCGTGCGGTGGGGGAGTTGGCAGGTGTAGCAATTGGAGCGACAGTTTTGCTCAACATTCTTGTGGCAGGACAAACAACGGGGGGTTCAATGAACCCTATCCGGAGTTTGGGTCCAGCTGTGGCTGCCGGAAATTATAAAGGATTGTGGATCTACTTGGTCGCACCCACACTCGGTGCCTTAGCTGGTGCTGCTACGTACACAGCTGTGAAGCTCCCACACAACCAGATTTATGACGAGGCTGATGGTGGCACTCCTTTGCCGCAATTCTACCCAGACGGATCTCCTTCCATCGAACAGGGTCGCGCAACAGAACCTCGTCGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

267

Amino Acids

27.56

Weight (kDa)

7.09

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AarI	CACCTGC	1 cut(s)	485
Acc16I	TGCGCA	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	2 cut(s)	65, 647
AccII	CGCG	1 cut(s)	777
AccIII	TCCGGA	3 cut(s)	54, 218, 573
AciI	CCGC	3 cut(s)	164, 479, 734
AclWI	GGATC	2 cut(s)	629, 760
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	2 cut(s)	580, 644
AgsI	TTSAA	1 cut(s)	561
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	7 cut(s)	61, 84, 407, 590, 656, 677, 685
AluI	AGCT	7 cut(s)	61, 84, 407, 590, 656, 677, 685
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	629, 760
Ama87I	CYCGRG	1 cut(s)	416
Aor13HI	TCCGGA	3 cut(s)	54, 218, 573
AoxI	GGCC	3 cut(s)	175, 208, 795
ApeKI	GCWGC	7 cut(s)	104, 107, 110, 151, 257, 596, 662
AspLEI	GCGC	2 cut(s)	173, 779
AspS9I	GGNCC	4 cut(s)	279, 382, 584, 795
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	3 cut(s)	279, 382, 584
BanI	GGYRCC	2 cut(s)	65, 647
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	7 cut(s)	116, 119, 122, 138, 269, 583, 649
BccI	CCATC	5 cut(s)	181, 329, 394, 710, 770
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	155, 179
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	9 cut(s)	105, 108, 111, 152, 165, 258, 597, 663, 734
BlsI	GCNGC	9 cut(s)	106, 109, 112, 153, 166, 259, 598, 664, 735
Bme18I	GGWCC	3 cut(s)	279, 382, 584
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	4 cut(s)	279, 382, 584, 795
BmiI	GGNNCC	5 cut(s)	67, 281, 384, 585, 649
Bpu10I	CCTNAGC	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	3 cut(s)	54, 218, 573
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 644
Bse3DI	GCAATG	3 cut(s)	166, 246, 397
BseAI	TCCGGA	3 cut(s)	54, 218, 573
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	87, 355
BseLI	CCNNNNNNNGG	2 cut(s)	580, 644
BseMI	GCAATG	3 cut(s)	166, 246, 397
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	7 cut(s)	116, 119, 122, 138, 269, 583, 649
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	3 cut(s)	177, 210, 797
BshNI	GGYRCC	2 cut(s)	65, 647
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	4 cut(s)	55, 219, 574, 600
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	580, 644
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	177, 210, 797
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp13I	TCCGGA	3 cut(s)	54, 218, 573
Bsp143I	GATC	2 cut(s)	621, 752
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	3 cut(s)	164, 479, 734
BspANI	GGCC	3 cut(s)	177, 210, 797
BspEI	TCCGGA	3 cut(s)	54, 218, 573
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	5 cut(s)	67, 281, 384, 585, 649
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	629, 760
BspT107I	GGYRCC	2 cut(s)	65, 647
BsrDI	GCAATG	3 cut(s)	166, 246, 397
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	621, 752
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	382, 451, 517
BstBAI	YACGTR	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	169, 175
BstDEI	CTNAG	1 cut(s)	652
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	87, 355
BstFNI	CGCG	1 cut(s)	777
BstHHI	GCGC	2 cut(s)	173, 779
BstKTI	GATC	2 cut(s)	624, 755
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	621, 752
BstNSI	RCATGY	1 cut(s)	171
BstSNI	TACGTA	1 cut(s)	669
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	7 cut(s)	116, 119, 122, 138, 269, 583, 649
BstX2I	RGATCY	2 cut(s)	621, 752
BstYI	RGATCY	2 cut(s)	621, 752
BsuRI	GGCC	3 cut(s)	177, 210, 797
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	87, 355
BtsI	GCAGTG	2 cut(s)	189, 198
BtsIMutI	CAGTG	3 cut(s)	189, 198, 465
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	169, 175
CfoI	GCGC	2 cut(s)	173, 779
Cfr13I	GGNCC	4 cut(s)	279, 382, 584, 795
CseI	GACGC	3 cut(s)	16, 157, 306
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	6 cut(s)	32, 41, 168, 276, 364, 442
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	1 cut(s)	652
DpnI	GATC	2 cut(s)	623, 754
DpnII	GATC	2 cut(s)	621, 752
DraIII	CACNNNGTG	1 cut(s)	647
Eco105I	TACGTA	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	3 cut(s)	279, 382, 584
Eco88I	CYCGRG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	6 cut(s)	35, 44, 171, 279, 367, 445
FaiI	YATR	9 cut(s)	33, 42, 169, 277, 299, 365, 443, 609, 705
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	6 cut(s)	31, 40, 167, 275, 363, 441
Fnu4HI	GCNGC	9 cut(s)	105, 108, 111, 152, 165, 258, 597, 663, 734
FokI	GGATG	2 cut(s)	74, 342
Fsp4HI	GCNGC	9 cut(s)	105, 108, 111, 152, 165, 258, 597, 663, 734
FspBI	CTAG	2 cut(s)	155, 179
FspI	TGCGCA	1 cut(s)	172
GlaI	GCGC	2 cut(s)	172, 778
GluI	GCNGC	9 cut(s)	105, 108, 111, 152, 165, 258, 597, 663, 734
HaeIII	GGCC	3 cut(s)	177, 210, 797
HapII	CCGG	4 cut(s)	55, 219, 574, 600
HgaI	GACGC	3 cut(s)	16, 157, 306
HhaI	GCGC	2 cut(s)	173, 779
Hin1II	CATG	6 cut(s)	35, 44, 171, 279, 367, 445
Hin6I	GCGC	2 cut(s)	171, 777
HinP1I	GCGC	2 cut(s)	171, 777
HindIII	AAGCTT	2 cut(s)	59, 405
HpaII	CCGG	4 cut(s)	55, 219, 574, 600
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	4 cut(s)	124, 204, 447, 672
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	55, 91, 219, 574
Hpy8I	GTNNAC	4 cut(s)	124, 204, 447, 672
Hpy99I	CGWCG	2 cut(s)	25, 795
HpyAV	CCTTC	1 cut(s)	768
HpyCH4III	ACNGT	3 cut(s)	382, 451, 517
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	3 cut(s)	257, 329, 413
HpyF3I	CTNAG	1 cut(s)	652
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	6 cut(s)	35, 44, 171, 279, 367, 445
HspAI	GCGC	2 cut(s)	171, 777
Kpn2I	TCCGGA	3 cut(s)	54, 218, 573
Kzo9I	GATC	2 cut(s)	621, 752
LmnI	GCTCC	6 cut(s)	40, 57, 81, 221, 509, 690
Lsp1109I	GCAGC	7 cut(s)	116, 119, 122, 138, 269, 583, 649
MaeI	CTAG	2 cut(s)	155, 179
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	5 cut(s)	43, 241, 376, 427, 451
MalI	GATC	2 cut(s)	623, 754
MboI	GATC	2 cut(s)	621, 752
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	2 cut(s)	621, 752
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	4 cut(s)	13, 504, 604, 737
MnlI	CCTC	4 cut(s)	48, 302, 703, 798
MroI	TCCGGA	3 cut(s)	54, 218, 573
MslI	CAYNNNNRTG	3 cut(s)	440, 533, 677
MspA1I	CMGCKG	2 cut(s)	590, 677
MspI	CCGG	4 cut(s)	55, 219, 574, 600
MunI	CAATTG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	777
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	2 cut(s)	621, 752
NlaIII	CATG	6 cut(s)	35, 44, 171, 279, 367, 445
NlaIV	GGNNCC	5 cut(s)	67, 281, 384, 585, 649
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	4 cut(s)	43, 241, 427, 451
NsbI	TGCGCA	1 cut(s)	172
NspI	RCATGY	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	677
PaeI	GCATGC	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	485
PceI	AGGCCT	1 cut(s)	177
PkrI	GCNGC	9 cut(s)	106, 109, 112, 153, 166, 259, 598, 664, 735
Ppu21I	YACGTR	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	609
PspN4I	GGNNCC	5 cut(s)	67, 281, 384, 585, 649
PspPI	GGNCC	4 cut(s)	279, 382, 584, 795
PspXI	VCTCGAGB	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	621, 752
PvuII	CAGCTG	2 cut(s)	590, 677
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	3 cut(s)	440, 533, 677
SatI	GCNGC	9 cut(s)	105, 108, 111, 152, 165, 258, 597, 663, 734
Sau3AI	GATC	2 cut(s)	621, 752
Sau96I	GGNCC	4 cut(s)	279, 382, 584, 795
SduI	GDGCHC	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	3 cut(s)	279, 382, 584
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	3 cut(s)	440, 533, 677
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SnaBI	TACGTA	1 cut(s)	669
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	4 cut(s)	13, 504, 604, 737
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	3 cut(s)	164, 479, 734
SspMI	CTAG	2 cut(s)	155, 179
StuI	AGGCCT	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	3 cut(s)	382, 451, 517
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	4 cut(s)	23, 265, 417, 765
TasI	AATT	4 cut(s)	13, 504, 604, 737
TauI	GCSGC	2 cut(s)	167, 736
TscAI	CASTG	3 cut(s)	189, 198, 472
TseFI	GTSAC	4 cut(s)	43, 241, 427, 451
TseI	GCWGC	7 cut(s)	104, 107, 110, 151, 257, 596, 662
Tsp45I	GTSAC	4 cut(s)	43, 241, 427, 451
TspDTI	ATGAA	6 cut(s)	76, 344, 352, 412, 424, 578
TspGWI	ACGGA	2 cut(s)	448, 765
TspRI	CASTG	3 cut(s)	189, 198, 472
VpaK11BI	GGWCC	3 cut(s)	279, 382, 584
XceI	RCATGY	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	2 cut(s)	155, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.