MD14G1144100.v1.1

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
23697369 .. 23707092
9724 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1144100.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGCGGAATCTGAGCCGGTGACGCCATCGGCTTCGGCGCCGGCGACGCCGGGAACGCCACTGCCTCTGTTTTCAGAGCCGAGAGTGGATTCGCTGTCGTATGAGCGTAAGTCAATGCCGCGAACCAAGTGCTTGCCTGTGATAGCTCCGACGTGGGGTCAATCTCCCAACTGCTTCAACGAGTTCCCTACTCCAACTGTCTCCCTCAGCCGCAAGGTAGGAGCTGAGTTCGTAGGAACCTTCATCTTGATGTTTGCAGCAAGTGCTGGACCAATCGTGAACCAAAAGTACAACGGAGCGGAGTCCTTGATCGGAAATGCAGCATGCGCAGGGCTTGGTGTGATGATTGTGATTCTCTCCACAGGCCACATTTCTGGTGCACATCTAAACCCATCTCTCACCATCGCGTTTGCCGCCCTGCGACATTTCCCATGGCTTCATGTCCCTGCCTACATCGCAGCTCAGGTTTTGGGCTCCATTTGCGCCTCGTTTACTCTCAAAGGGGTTTTACATCCGTACATGTCTGGCGGAGTCACGGTGCCTACTGTGAGCACTGGCCAGGCTTTTGGACTTGAGTTCATCATCACTTTTAATCTCTTGTTTGTTGTCACTGCTGTTGCAACTGACACTCGAGCGTTGGGAGAGTTGGCTGGTTTAGCAGTTGGGGCTTGTGTCATGCTAAACATTCTTATGGCAGGGCCATCTAGTGGTGGTTCAATGAACCCGGTGCGTACTCTCGGCCCTGCTATCGCTGCCGGAAACTACACCAAGTTGTGGATATACCTGGTGGCTCCTACCCTTGGAGCTGTCGCCGGGGCAGGTACCTATACAGCTGTGAAGCTTCGAGAAGATGAGGTGGATGCACCTGTGCGCATGGCCAGGAGCTTCCGTCGCTAG

Protein Analysis

299

Amino Acids

31.05

Weight (kDa)

8.85

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 66 - 276 7.2e-53 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 328, 872
Acc36I ACCTGC 1 cut(s) 809
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 3 cut(s) 37, 538, 821
AccB7I CCANNNNNTGG 2 cut(s) 707, 774
AccBSI CCGCTC 1 cut(s) 299
AccII CGCG 2 cut(s) 121, 407
AciI CCGC 6 cut(s) 5, 119, 211, 299, 414, 528
AcoI YGGCCR 2 cut(s) 556, 876
AcyI GRCGYC 3 cut(s) 23, 38, 47
AfaI GTAC 4 cut(s) 290, 518, 733, 823
AfiI CCNNNNNNNGG 4 cut(s) 155, 707, 774, 800
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 2 cut(s) 178, 717
AhdI GACNNNNNGTC 1 cut(s) 156
AjiI CACGTC 1 cut(s) 153
AjnI CCWGG 3 cut(s) 558, 783, 878
AluBI AGCT 7 cut(s) 146, 224, 461, 806, 833, 841, 885
AluI AGCT 7 cut(s) 146, 224, 461, 806, 833, 841, 885
Alw21I GWGCWC 2 cut(s) 382, 554
Alw26I GTCTC 1 cut(s) 205
Alw44I GTGCAC 1 cut(s) 378
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 5 cut(s) 364, 556, 698, 739, 876
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 4 cut(s) 257, 320, 458, 752
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 4 cut(s) 40, 329, 485, 873
AspS9I GGNCC 3 cut(s) 269, 698, 740
AsuC2I CCSGG 3 cut(s) 51, 725, 814
AsuHPI GGTGA 2 cut(s) 31, 391
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 2 cut(s) 558, 878
BanI GGYRCC 3 cut(s) 37, 538, 821
BanII GRGCYC 1 cut(s) 476
Bbv12I GWGCWC 2 cut(s) 382, 554
BbvCI CCTCAGC 1 cut(s) 206
BbvI GCAGC 4 cut(s) 269, 332, 470, 739
BccI CCATC 4 cut(s) 34, 400, 410, 709
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 3 cut(s) 560, 785, 880
BcnI CCSGG 3 cut(s) 51, 725, 814
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 705, 895
BfoI RGCGCY 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 809
BisI GCNGC 7 cut(s) 119, 211, 258, 321, 414, 459, 753
BlsI GCNGC 7 cut(s) 120, 212, 259, 322, 415, 460, 754
Bme1390I CCNGG 6 cut(s) 51, 560, 725, 785, 814, 880
Bme18I GGWCC 1 cut(s) 269
BmeRI GACNNNNNGTC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 269, 698, 740
BmiI GGNNCC 6 cut(s) 39, 238, 475, 540, 792, 823
BmrFI CCNGG 6 cut(s) 51, 560, 725, 785, 814, 880
BmsI GCATC 1 cut(s) 850
Bpu10I CCTNAGC 2 cut(s) 206, 462
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 3 cut(s) 51, 725, 814
BsaHI GRCGYC 3 cut(s) 23, 38, 47
BsaJI CCNNGG 3 cut(s) 431, 799, 813
BsaXI ACNNNNNCTCC 3 cut(s) 522, 552, 874
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 707, 774, 800
Bse118I RCCGGY 2 cut(s) 16, 40
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 3 cut(s) 560, 785, 880
BseDI CCNNGG 3 cut(s) 431, 799, 813
BseGI GGATG 2 cut(s) 511, 865
BseLI CCNNNNNNNGG 4 cut(s) 155, 707, 774, 800
BseMII CTCAG 3 cut(s) 216, 220, 476
BseNI ACTGG 1 cut(s) 559
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 4 cut(s) 269, 332, 470, 739
Bsh1236I CGCG 2 cut(s) 121, 407
BshFI GGCC 5 cut(s) 366, 558, 700, 741, 878
BshNI GGYRCC 3 cut(s) 37, 538, 821
BsiHKAI GWGCWC 2 cut(s) 382, 554
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 6 cut(s) 17, 41, 50, 725, 756, 813
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 4 cut(s) 155, 707, 774, 800
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 5 cut(s) 366, 558, 700, 741, 878
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 3 cut(s) 382, 476, 554
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 6 cut(s) 5, 119, 211, 299, 414, 528
BspANI GGCC 5 cut(s) 366, 558, 700, 741, 878
BspCNI CTCAG 4 cut(s) 4, 217, 219, 475
BspFNI CGCG 2 cut(s) 121, 407
BspLI GGNNCC 6 cut(s) 39, 238, 475, 540, 792, 823
BspMI ACCTGC 1 cut(s) 809
BspT107I GGYRCC 3 cut(s) 37, 538, 821
BsrBI CCGCTC 1 cut(s) 299
BsrFI RCCGGY 2 cut(s) 16, 40
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 2 cut(s) 16, 40
BssECI CCNNGG 3 cut(s) 431, 799, 813
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 3 cut(s) 23, 38, 47
BssT1I CCWWGG 2 cut(s) 431, 799
Bst2UI CCWGG 3 cut(s) 560, 785, 880
Bst4CI ACNGT 3 cut(s) 199, 538, 547
BstACI GRCGYC 3 cut(s) 23, 38, 47
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 42, 134, 325
BstDEI CTNAG 4 cut(s) 12, 206, 225, 462
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 2 cut(s) 511, 865
BstFNI CGCG 2 cut(s) 121, 407
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 4 cut(s) 40, 329, 485, 873
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 309
BstNI CCWGG 3 cut(s) 560, 785, 880
BstNSI RCATGY 2 cut(s) 327, 523
BstSCI CCNGG 6 cut(s) 49, 558, 723, 783, 812, 878
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 2 cut(s) 121, 407
BstV1I GCAGC 4 cut(s) 269, 332, 470, 739
BstXI CCANNNNNNTGG 2 cut(s) 374, 566
BsuRI GGCC 5 cut(s) 366, 558, 700, 741, 878
BtgI CCRYGG 1 cut(s) 431
BtgZI GCGATG 2 cut(s) 388, 439
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 511, 865
BtsI GCAGTG 2 cut(s) 59, 609
BtsIMutI CAGTG 3 cut(s) 59, 552, 609
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 3 cut(s) 42, 134, 325
CfoI GCGC 4 cut(s) 40, 329, 485, 873
Cfr10I RCCGGY 2 cut(s) 16, 40
Cfr13I GGNCC 3 cut(s) 269, 698, 740
CseI GACGC 2 cut(s) 31, 55
CsiI ACCWGGT 1 cut(s) 783
Csp6I GTAC 4 cut(s) 289, 517, 732, 822
CviAII CATG 6 cut(s) 324, 432, 440, 520, 676, 874
CviQI GTAC 4 cut(s) 289, 517, 732, 822
DdeI CTNAG 4 cut(s) 12, 206, 225, 462
DinI GGCGCC 1 cut(s) 39
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DriI GACNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 2 cut(s) 556, 876
Eam1105I GACNNNNNGTC 1 cut(s) 156
EciI GGCGGA 2 cut(s) 20, 543
Eco130I CCWWGG 2 cut(s) 431, 799
Eco24I GRGCYC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 630
EcoRII CCWGG 3 cut(s) 558, 783, 878
EcoT14I CCWWGG 2 cut(s) 431, 799
EcoT38I GRGCYC 1 cut(s) 476
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 431, 799
FaeI CATG 6 cut(s) 327, 435, 443, 523, 679, 877
FaqI GGGAC 1 cut(s) 428
FatI CATG 6 cut(s) 323, 431, 439, 519, 675, 873
Fnu4HI GCNGC 7 cut(s) 119, 211, 258, 321, 414, 459, 753
FokI GGATG 2 cut(s) 498, 872
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 7 cut(s) 119, 211, 258, 321, 414, 459, 753
FspAI RTGCGCAY 1 cut(s) 872
FspBI CTAG 2 cut(s) 705, 895
FspI TGCGCA 2 cut(s) 328, 872
GlaI GCGC 4 cut(s) 39, 328, 484, 872
GluI GCNGC 7 cut(s) 119, 211, 258, 321, 414, 459, 753
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 5 cut(s) 366, 558, 700, 741, 878
HapII CCGG 6 cut(s) 17, 41, 50, 725, 756, 813
HgaI GACGC 2 cut(s) 31, 55
HhaI GCGC 4 cut(s) 40, 329, 485, 873
Hin1I GRCGYC 3 cut(s) 23, 38, 47
Hin1II CATG 6 cut(s) 327, 435, 443, 523, 679, 877
Hin6I GCGC 4 cut(s) 38, 327, 483, 871
HinP1I GCGC 4 cut(s) 38, 327, 483, 871
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 5 cut(s) 8, 89, 302, 352, 531
HpaII CCGG 6 cut(s) 17, 41, 50, 725, 756, 813
HphI GGTGA 2 cut(s) 31, 391
Hpy166II GTNNAC 3 cut(s) 280, 380, 492
Hpy188I TCNGA 4 cut(s) 13, 76, 150, 314
Hpy188III TCNNGA 3 cut(s) 247, 277, 845
Hpy8I GTNNAC 3 cut(s) 280, 380, 492
Hpy99I CGWCG 3 cut(s) 49, 154, 894
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 3 cut(s) 199, 538, 547
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 5 cut(s) 257, 320, 380, 620, 863
HpyF3I CTNAG 4 cut(s) 12, 206, 225, 462
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 3 cut(s) 23, 38, 47
Hsp92II CATG 6 cut(s) 327, 435, 443, 523, 679, 877
HspAI GCGC 4 cut(s) 38, 327, 483, 871
KasI GGCGCC 1 cut(s) 37
KpnI GGTACC 1 cut(s) 825
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 7 cut(s) 151, 221, 296, 479, 796, 803, 882
Lsp1109I GCAGC 4 cut(s) 269, 332, 470, 739
LweI GCATC 1 cut(s) 850
MabI ACCWGGT 1 cut(s) 783
MaeI CTAG 2 cut(s) 705, 895
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 19, 532, 607
MalI GATC 1 cut(s) 311
MbiI CCGCTC 1 cut(s) 299
MboI GATC 1 cut(s) 309
MboII GAAGA 1 cut(s) 860
MhlI GDGCHC 3 cut(s) 382, 476, 554
MlsI TGGCCA 2 cut(s) 558, 878
MluNI TGGCCA 2 cut(s) 558, 878
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 2 cut(s) 311, 540
MmeI TCCRAC 2 cut(s) 173, 218
MnlI CCTC 4 cut(s) 75, 215, 496, 847
Mox20I TGGCCA 2 cut(s) 558, 878
MreI CGCCGGCG 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 2 cut(s) 558, 878
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 248, 689
Msp20I TGGCCA 2 cut(s) 558, 878
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 6 cut(s) 17, 41, 50, 725, 756, 813
MspR9I CCNGG 6 cut(s) 51, 560, 725, 785, 814, 880
MvaI CCWGG 3 cut(s) 560, 785, 880
MvnI CGCG 2 cut(s) 121, 407
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 38
NciI CCSGG 3 cut(s) 51, 725, 814
NcoI CCATGG 1 cut(s) 431
NdeII GATC 1 cut(s) 309
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 6 cut(s) 327, 435, 443, 523, 679, 877
NlaIV GGNNCC 6 cut(s) 39, 238, 475, 540, 792, 823
NmeAIII GCCGAG 2 cut(s) 105, 717
NmuCI GTSAC 3 cut(s) 19, 532, 607
NsbI TGCGCA 2 cut(s) 328, 872
NspI RCATGY 2 cut(s) 327, 523
PaeI GCATGC 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 630
PciI ACATGT 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 8, 89, 352
PflMI CCANNNNNTGG 2 cut(s) 707, 774
PkrI GCNGC 7 cut(s) 120, 212, 259, 322, 415, 460, 754
PleI GAGTC 2 cut(s) 310, 539
PluTI GGCGCC 1 cut(s) 41
PpsI GAGTC 2 cut(s) 310, 539
PscI ACATGT 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 558, 783, 878
PspGI CCWGG 3 cut(s) 558, 783, 878
PspN4I GGNNCC 6 cut(s) 39, 238, 475, 540, 792, 823
PspPI GGNCC 3 cut(s) 269, 698, 740
PspXI VCTCGAGB 1 cut(s) 630
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 4 cut(s) 290, 518, 733, 823
RsaNI GTAC 4 cut(s) 289, 517, 732, 822
RseI CAYNNNNRTG 2 cut(s) 248, 689
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 7 cut(s) 119, 211, 258, 321, 414, 459, 753
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 3 cut(s) 269, 698, 740
SchI GAGTC 2 cut(s) 311, 540
ScrFI CCNGG 6 cut(s) 51, 560, 725, 785, 814, 880
SduI GDGCHC 3 cut(s) 382, 476, 554
SexAI ACCWGGT 1 cut(s) 783
SfaNI GCATC 1 cut(s) 850
SfoI GGCGCC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 630
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 2 cut(s) 248, 689
SmlI CTYRAG 2 cut(s) 572, 630
SmoI CTYRAG 2 cut(s) 572, 630
SphI GCATGC 1 cut(s) 327
SsiI CCGC 6 cut(s) 5, 119, 211, 299, 414, 528
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 2 cut(s) 705, 895
StyD4I CCNGG 6 cut(s) 49, 558, 723, 783, 812, 878
StyI CCWWGG 2 cut(s) 431, 799
TaaI ACNGT 3 cut(s) 199, 538, 547
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 631, 844
TatI WGTACW 1 cut(s) 288
TauI GCSGC 3 cut(s) 121, 213, 416
TfiI GAWTC 3 cut(s) 8, 89, 352
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 3 cut(s) 66, 559, 616
TseFI GTSAC 3 cut(s) 19, 532, 607
TseI GCWGC 4 cut(s) 257, 320, 458, 752
Tsp45I GTSAC 3 cut(s) 19, 532, 607
TspDTI ATGAA 4 cut(s) 232, 428, 568, 734
TspGWI ACGGA 3 cut(s) 309, 504, 878
TspRI CASTG 3 cut(s) 66, 559, 616
Van91I CCANNNNNTGG 2 cut(s) 707, 774
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 2 cut(s) 327, 523
XhoI CTCGAG 1 cut(s) 630
XspI CTAG 2 cut(s) 705, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.