Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Reverse (-)

59864450 .. 59870272

Gene Structure 5823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTGCTGCTACGGCTGGACCTATCGTGAACCAGAAGTACAATGGAGCAGAGTCCCTTATCGGAAATGCAGCATGCGCCGGACTTGGAGTGATGATCGTGATTCTTTCCACGGGCCACATCTCCGGTGCACACCTGAACCCGTCTCTCACCATTGCCTTCGCCTGCCTGCGTCATTTCCCGTGGACTCAAGTCCCTGCCTACATAGCCGCCCAGGTCTCGGCATCCATCTGTGCTGGTTTTGCCCTCAAGGGGGTGTACCATCCCTACATGTCTGGCGGAGTCACGGTGCCTTCTGTGAGCGATGGCCAGGCTTTTGCTCTTGAGTTCATCATCACTTTCAATCTCCTGTTCGTGGTCACTGCTGTTGCTACCGATACACGTGCGGTGGGAGAGTTGGCTGGTTTAGCTGTTGGGGCAACTGTCATGCTAAACATTCTTATAGCTGGACCATCAAGTGGCGGTTCGATGAACCCTGTGCGAACTCTGGGCCCTGCCGTGGCCGCTGGAAACTATAGGGCATTGTGGATATACCTGGTGGCCCCCACGCTGGGTGCCGTGGCCGGGGCAGGAACCTACACAGCCGTGAAGCTTCGGGGCGACGAGATAGGAGCTCCGACTAGTGAGGTCAGGAGCTTTCGCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015105 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015893 GO:0016020 GO:0016021 GO:0016328 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046685 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

215

Amino Acids

21.96

Weight (kDa)

8.88

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	10 - 193	3.1e-45	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	289, 554
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	5 cut(s)	210, 279, 386, 462, 504
AcoI	YGGCCR	3 cut(s)	307, 501, 561
AcvI	CACGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	41, 260
AfiI	CCNNNNNNNGG	9 cut(s)	220, 252, 253, 355, 458, 499, 550, 551, 564
AflIII	ACRYGT	2 cut(s)	270, 380
AgsI	TTSAA	1 cut(s)	343
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	3 cut(s)	213, 309, 534
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	5 cut(s)	410, 446, 592, 614, 636
AluI	AGCT	5 cut(s)	410, 446, 592, 614, 636
Alw21I	GWGCWC	2 cut(s)	133, 616
Alw26I	GTCTC	2 cut(s)	150, 223
Alw44I	GTGCAC	1 cut(s)	129
AoxI	GGCC	6 cut(s)	115, 307, 490, 501, 540, 561
ApaI	GGGCCC	1 cut(s)	494
ApaLI	GTGCAC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	8, 71
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	6 cut(s)	20, 115, 449, 490, 491, 541
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	20, 449
BaeGI	GKGCMC	2 cut(s)	133, 494
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	2 cut(s)	289, 554
BanII	GRGCYC	2 cut(s)	494, 616
BbrPI	CACGTG	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	133, 616
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	4 cut(s)	236, 270, 299, 460
BceAI	ACGGC	5 cut(s)	30, 482, 542, 569, 627
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	3 cut(s)	215, 311, 536
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	150, 223
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	514
BisI	GCNGC	4 cut(s)	9, 72, 210, 504
BlsI	GCNGC	4 cut(s)	10, 73, 211, 505
Bme1390I	CCNGG	4 cut(s)	215, 311, 536, 565
Bme18I	GGWCC	2 cut(s)	20, 449
BmgT120I	GGNCC	6 cut(s)	20, 115, 449, 490, 491, 541
BmiI	GGNNCC	5 cut(s)	291, 492, 543, 556, 574
BmrFI	CCNGG	4 cut(s)	215, 311, 536, 565
BmsI	GCATC	1 cut(s)	233
BoxI	GACNNNNGTC	1 cut(s)	191
BpuEI	CTTGAG	3 cut(s)	174, 233, 344
BpuMI	CCSGG	1 cut(s)	565
BsaAI	YACGTR	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	6 cut(s)	111, 182, 213, 498, 558, 564
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	9 cut(s)	220, 252, 253, 355, 458, 499, 550, 551, 564
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	215, 311, 536
BseDI	CCNNGG	6 cut(s)	111, 182, 213, 498, 558, 564
BseGI	GGATG	2 cut(s)	224, 262
BseLI	CCNNNNNNNGG	9 cut(s)	220, 252, 253, 355, 458, 499, 550, 551, 564
BseMI	GCAATG	1 cut(s)	153
BseSI	GKGCMC	2 cut(s)	133, 494
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	550
BshFI	GGCC	6 cut(s)	117, 309, 492, 503, 542, 563
BshNI	GGYRCC	2 cut(s)	289, 554
BsiHKAI	GWGCWC	2 cut(s)	133, 616
BsiSI	CCGG	3 cut(s)	81, 126, 564
BslFI	GGGAC	2 cut(s)	40, 179
BslI	CCNNNNNNNGG	9 cut(s)	220, 252, 253, 355, 458, 499, 550, 551, 564
BsmAI	GTCTC	2 cut(s)	150, 223
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	2 cut(s)	40, 179
BsnI	GGCC	6 cut(s)	117, 309, 492, 503, 542, 563
Bso31I	GGTCTC	1 cut(s)	223
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	3 cut(s)	133, 494, 616
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	5 cut(s)	210, 279, 386, 462, 504
BspANI	GGCC	6 cut(s)	117, 309, 492, 503, 542, 563
BspLI	GGNNCC	5 cut(s)	291, 492, 543, 556, 574
BspT107I	GGYRCC	2 cut(s)	289, 554
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	6 cut(s)	111, 182, 213, 498, 558, 564
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	215, 311, 536
Bst4CI	ACNGT	2 cut(s)	289, 424
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	76, 166, 170
BstDSI	CCRYGG	4 cut(s)	111, 182, 498, 558
BstF5I	GGATG	2 cut(s)	224, 262
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	150, 223
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 77, 206, 242, 407, 416, 503
BstNI	CCWGG	3 cut(s)	215, 311, 536
BstNSI	RCATGY	2 cut(s)	78, 274
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	4 cut(s)	213, 309, 534, 563
BstSFI	CTRYAG	1 cut(s)	514
BstSLI	GKGCMC	2 cut(s)	133, 494
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	6 cut(s)	117, 309, 492, 503, 542, 563
BtgI	CCRYGG	4 cut(s)	111, 182, 498, 558
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	224, 262
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	76, 166, 170
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	6 cut(s)	20, 115, 449, 490, 491, 541
CseI	GACGC	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	40, 259
CviAII	CATG	3 cut(s)	75, 271, 427
CviQI	GTAC	2 cut(s)	40, 259
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	3 cut(s)	307, 501, 561
EciI	GGCGGA	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	614
Eco24I	GRGCYC	2 cut(s)	494, 616
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	20, 449
Eco53kI	GAGCTC	1 cut(s)	614
Eco72I	CACGTG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	3 cut(s)	213, 309, 534
EcoT38I	GRGCYC	2 cut(s)	494, 616
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	78, 274, 430
FaiI	YATR	7 cut(s)	76, 206, 272, 428, 443, 516, 532
FaqI	GGGAC	2 cut(s)	40, 179
FatI	CATG	3 cut(s)	74, 270, 426
Fnu4HI	GCNGC	4 cut(s)	9, 72, 210, 504
FokI	GGATG	2 cut(s)	211, 249
FriOI	GRGCYC	2 cut(s)	494, 616
Fsp4HI	GCNGC	4 cut(s)	9, 72, 210, 504
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	9, 72, 210, 504
GsaI	CCCAGC	1 cut(s)	554
HaeIII	GGCC	6 cut(s)	117, 309, 492, 503, 542, 563
HapII	CCGG	3 cut(s)	81, 126, 564
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	78, 274, 430
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	53, 103, 187, 282
HpaII	CCGG	3 cut(s)	81, 126, 564
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	4 cut(s)	31, 131, 186, 259
Hpy188I	TCNGA	2 cut(s)	65, 618
Hpy188III	TCNNGA	4 cut(s)	28, 100, 323, 631
Hpy8I	GTNNAC	4 cut(s)	31, 131, 186, 259
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	169, 303
HpyCH4III	ACNGT	2 cut(s)	289, 424
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	71, 131
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 77, 206, 242, 407, 416, 503
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	78, 274, 430
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	4 cut(s)	47, 611, 619, 633
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	233
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	283, 358
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	133, 494, 616
MlsI	TGGCCA	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	3 cut(s)	62, 181, 291
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	2 cut(s)	257, 619
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	3 cut(s)	81, 126, 564
MspR9I	CCNGG	4 cut(s)	215, 311, 536, 565
MvaI	CCWGG	3 cut(s)	215, 311, 536
MwoI	GCNNNNNNNGC	7 cut(s)	14, 77, 206, 242, 407, 416, 503
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	78, 274, 430
NlaIV	GGNNCC	5 cut(s)	291, 492, 543, 556, 574
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	2 cut(s)	283, 358
NspI	RCATGY	2 cut(s)	78, 274
OliI	CACNNNNGTG	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	78
PciI	ACATGT	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	10, 73, 211, 505
PleI	GAGTC	3 cut(s)	61, 181, 290
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
PpsI	GAGTC	3 cut(s)	61, 181, 290
Ppu21I	YACGTR	1 cut(s)	383
PscI	ACATGT	1 cut(s)	270
PshAI	GACNNNNGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	616
Psp6I	CCWGG	3 cut(s)	213, 309, 534
PspCI	CACGTG	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	213, 309, 534
PspN4I	GGNNCC	5 cut(s)	291, 492, 543, 556, 574
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	6 cut(s)	20, 115, 449, 490, 491, 541
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
RsaI	GTAC	2 cut(s)	41, 260
RsaNI	GTAC	2 cut(s)	40, 259
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	616
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	4 cut(s)	9, 72, 210, 504
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	6 cut(s)	20, 115, 449, 490, 491, 541
SchI	GAGTC	3 cut(s)	62, 181, 291
ScrFI	CCNGG	4 cut(s)	215, 311, 536, 565
SduI	GDGCHC	3 cut(s)	133, 494, 616
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	514
SinI	GGWCC	2 cut(s)	20, 449
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	189, 248, 323
SmoI	CTYRAG	3 cut(s)	189, 248, 323
SpeI	ACTAGT	1 cut(s)	620
SphI	GCATGC	1 cut(s)	78
SsiI	CCGC	5 cut(s)	210, 279, 386, 462, 504
SspMI	CTAG	1 cut(s)	621
SstI	GAGCTC	1 cut(s)	616
StyD4I	CCNGG	4 cut(s)	213, 309, 534, 563
TaaI	ACNGT	2 cut(s)	289, 424
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	467
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	2 cut(s)	212, 506
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	283, 358
TseI	GCWGC	2 cut(s)	8, 71
Tsp45I	GTSAC	2 cut(s)	283, 358
TspDTI	ATGAA	2 cut(s)	319, 485
TspRI	CASTG	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	458
VneI	GTGCAC	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	20, 449
XceI	RCATGY	2 cut(s)	78, 274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.