Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Forward (+)

20364780 .. 20370878

Gene Structure 6099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCAGGAGGAACCAAATGCTTTTCCAGCTTCCATGCTCCCAATGTCACCCTTTTCAGGAAGCTTGGGGCGGAGTTTGTAGGGACCTTCATCTTGGTGTTTTCAGCAGCGGCAGGACCTATTGTGAATGAGAAGTACCATGGTGTAGAGACACTGCTAGGCAATGCGGCATGTTCAGGCCTAGCAGTGATGGTCGTCATTCTGTCCACGGGCCACATCTCCGGAGCACACTTAAACCCATCGGTCACCCTTGCCTTCGCAACGTTTCGACACTTCCCATGGTCCCAAGTTCCCCTCTACATAATAGTGCAGGTTTCGGCATCAATTTCTGCAAGTTTTGCTCTCAAGGGTGTCTTCCATCCCTTCATGTCTGGTGGAGTTACGGTTCCTTCAGTGACCCATGGCCAAGCTTTTTCACTCGAGTTCATCGTCACTTTCATTCTTATGTTTACTATAACTGCCGTTGCCACTGATACCCGTGCGGTAGGGGAGATGGCAGGTGTGGCAATTGGTGCTACAGTATTGCTCGACATTCTTGTGGCAGGGCCAACTACTGGAGGTTCAATGAATCCTATCCGGACTTTGGGTCCAGCTATTGCTGCAGGAAATTATAAGGGATTGTGGATCTATTTGGTTGCACCCACATTTGGGGCCTTAGCTGGAGCTGCTGCCTACACAACTGTGAAGCTCCCAGACAATAAACCTCCAAACCAGGTTAGGATTTCTACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

245

Amino Acids

25.32

Weight (kDa)

9.1

Isoelectric Point (pI)

23.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	2 cut(s)	301, 488
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccIII	TCCGGA	2 cut(s)	221, 576
AciI	CCGC	4 cut(s)	71, 110, 167, 482
AclI	AACGTT	1 cut(s)	263
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	5 cut(s)	57, 554, 583, 647, 648
AgsI	TTSAA	1 cut(s)	564
AhdI	GACNNNNNGTC	1 cut(s)	585
AjnI	CCWGG	2 cut(s)	4, 711
AleI	CACNNNNGTG	1 cut(s)	680
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	7 cut(s)	30, 64, 410, 593, 659, 665, 688
AluI	AGCT	7 cut(s)	30, 64, 410, 593, 659, 665, 688
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	419
Aor13HI	TCCGGA	2 cut(s)	221, 576
AoxI	GGCC	5 cut(s)	178, 211, 403, 545, 651
ApeKI	GCWGC	4 cut(s)	107, 599, 665, 668
AspS9I	GGNCC	7 cut(s)	84, 116, 211, 282, 545, 587, 651
AsuHPI	GGTGA	2 cut(s)	40, 238
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	4 cut(s)	84, 116, 282, 587
BalI	TGGCCA	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	119, 586, 652, 655
BccI	CCATC	4 cut(s)	184, 247, 366, 487
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	6, 713
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	158, 182
BfmI	CTRYAG	2 cut(s)	516, 600
BfuAI	ACCTGC	2 cut(s)	301, 488
BisI	GCNGC	6 cut(s)	108, 111, 168, 600, 666, 669
BlsI	GCNGC	6 cut(s)	109, 112, 169, 601, 667, 670
Bme1390I	CCNGG	2 cut(s)	6, 713
Bme18I	GGWCC	4 cut(s)	84, 116, 282, 587
BmeRI	GACNNNNNGTC	1 cut(s)	585
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	7 cut(s)	84, 116, 211, 282, 545, 587, 651
BmiI	GGNNCC	6 cut(s)	13, 85, 284, 387, 588, 652
BmrFI	CCNGG	2 cut(s)	6, 713
BmsI	GCATC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	346
BpmI	CTGGAG	2 cut(s)	576, 681
Bpu10I	CCTNAGC	1 cut(s)	655
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	139, 207, 278, 400
BsaWI	WCCGGW	2 cut(s)	221, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 554, 583, 647, 648
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	169
BseAI	TCCGGA	2 cut(s)	221, 576
BseBI	CCWGG	2 cut(s)	6, 713
BseDI	CCNNGG	4 cut(s)	139, 207, 278, 400
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	5 cut(s)	57, 554, 583, 647, 648
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	559
BseXI	GCAGC	4 cut(s)	119, 586, 652, 655
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	5 cut(s)	180, 213, 405, 547, 653
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	222, 577
BslFI	GGGAC	2 cut(s)	97, 268
BslI	CCNNNNNNNGG	5 cut(s)	57, 554, 583, 647, 648
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	97, 268
BsnI	GGCC	5 cut(s)	180, 213, 405, 547, 653
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	2 cut(s)	221, 576
Bsp143I	GATC	1 cut(s)	624
Bsp19I	CCATGG	3 cut(s)	139, 278, 400
BspACI	CCGC	4 cut(s)	71, 110, 167, 482
BspANI	GGCC	5 cut(s)	180, 213, 405, 547, 653
BspEI	TCCGGA	2 cut(s)	221, 576
BspLI	GGNNCC	6 cut(s)	13, 85, 284, 387, 588, 652
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	2 cut(s)	301, 488
BspPI	GGATC	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	4 cut(s)	139, 207, 278, 400
BssMI	GATC	1 cut(s)	624
BssT1I	CCWWGG	3 cut(s)	139, 278, 400
Bst2UI	CCWGG	2 cut(s)	6, 713
Bst4CI	ACNGT	3 cut(s)	385, 520, 682
BstAPI	GCANNNNNTGC	2 cut(s)	338, 512
BstDEI	CTNAG	1 cut(s)	655
BstDSI	CCRYGG	4 cut(s)	139, 207, 278, 400
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	627
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	624
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 338, 503, 512, 599, 665
BstNI	CCWGG	2 cut(s)	6, 713
BstNSI	RCATGY	1 cut(s)	174
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	4, 711
BstSFI	CTRYAG	2 cut(s)	516, 600
BstV1I	GCAGC	4 cut(s)	119, 586, 652, 655
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	5 cut(s)	180, 213, 405, 547, 653
BtgI	CCRYGG	4 cut(s)	139, 207, 278, 400
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	2 cut(s)	152, 192
BtsIMutI	CAGTG	4 cut(s)	152, 192, 399, 468
BveI	ACCTGC	2 cut(s)	301, 488
Cfr13I	GGNCC	7 cut(s)	84, 116, 211, 282, 545, 587, 651
CsiI	ACCWGGT	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	6 cut(s)	35, 140, 171, 279, 367, 401
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	655
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
DriI	GACNNNNNGTC	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	403
Eam1105I	GACNNNNNGTC	1 cut(s)	585
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	3 cut(s)	139, 278, 400
Eco147I	AGGCCT	1 cut(s)	180
Eco47I	GGWCC	4 cut(s)	84, 116, 282, 587
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	244
EcoO109I	RGGNCCY	3 cut(s)	84, 116, 651
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	4, 711
EcoT14I	CCWWGG	3 cut(s)	139, 278, 400
ErhI	CCWWGG	3 cut(s)	139, 278, 400
FaeI	CATG	6 cut(s)	38, 143, 174, 282, 370, 404
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	97, 268
FatI	CATG	6 cut(s)	34, 139, 170, 278, 366, 400
Fnu4HI	GCNGC	6 cut(s)	108, 111, 168, 600, 666, 669
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	6 cut(s)	108, 111, 168, 600, 666, 669
FspBI	CTAG	2 cut(s)	158, 182
GluI	GCNGC	6 cut(s)	108, 111, 168, 600, 666, 669
GsuI	CTGGAG	2 cut(s)	576, 681
HaeIII	GGCC	5 cut(s)	180, 213, 405, 547, 653
HapII	CCGG	2 cut(s)	222, 577
Hin1II	CATG	6 cut(s)	38, 143, 174, 282, 370, 404
HindIII	AAGCTT	2 cut(s)	62, 408
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	2 cut(s)	222, 577
HphI	GGTGA	2 cut(s)	40, 238
Hpy166II	GTNNAC	2 cut(s)	207, 450
Hpy188III	TCNNGA	3 cut(s)	58, 222, 577
Hpy8I	GTNNAC	2 cut(s)	207, 450
HpyAV	CCTTC	4 cut(s)	97, 265, 373, 399
HpyCH4III	ACNGT	3 cut(s)	385, 520, 682
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	310, 332, 602, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 338, 503, 512, 599, 665
HpyF3I	CTNAG	1 cut(s)	655
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	6 cut(s)	38, 143, 174, 282, 370, 404
Kpn2I	TCCGGA	2 cut(s)	221, 576
Kzo9I	GATC	1 cut(s)	624
LmnI	GCTCC	4 cut(s)	43, 224, 662, 693
Lsp1109I	GCAGC	4 cut(s)	119, 586, 652, 655
LweI	GCATC	1 cut(s)	329
MabI	ACCWGGT	1 cut(s)	711
MaeI	CTAG	2 cut(s)	158, 182
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	5 cut(s)	46, 244, 379, 394, 430
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	3 cut(s)	324, 507, 607
MluNI	TGGCCA	1 cut(s)	405
MnlI	CCTC	3 cut(s)	305, 551, 714
Mox20I	TGGCCA	1 cut(s)	405
MroI	TCCGGA	2 cut(s)	221, 576
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	5 cut(s)	95, 305, 443, 536, 680
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	222, 577
MspR9I	CCNGG	2 cut(s)	6, 713
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	6, 713
MwoI	GCNNNNNNNGC	6 cut(s)	27, 338, 503, 512, 599, 665
NcoI	CCATGG	3 cut(s)	139, 278, 400
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	6 cut(s)	38, 143, 174, 282, 370, 404
NlaIV	GGNNCC	6 cut(s)	13, 85, 284, 387, 588, 652
NmuCI	GTSAC	4 cut(s)	46, 244, 394, 430
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	6 cut(s)	109, 112, 169, 601, 667, 670
PpuMI	RGGWCCY	2 cut(s)	84, 116
PsiI	TTATAA	1 cut(s)	612
Psp1406I	AACGTT	1 cut(s)	263
Psp5II	RGGWCCY	2 cut(s)	84, 116
Psp6I	CCWGG	2 cut(s)	4, 711
PspEI	GGTNACC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	4, 711
PspN4I	GGNNCC	6 cut(s)	13, 85, 284, 387, 588, 652
PspPI	GGNCC	7 cut(s)	84, 116, 211, 282, 545, 587, 651
PspPPI	RGGWCCY	2 cut(s)	84, 116
PspXI	VCTCGAGB	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	5 cut(s)	95, 305, 443, 536, 680
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	6 cut(s)	108, 111, 168, 600, 666, 669
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	7 cut(s)	84, 116, 211, 282, 545, 587, 651
ScrFI	CCNGG	2 cut(s)	6, 713
SduI	GDGCHC	1 cut(s)	229
SexAI	ACCWGGT	1 cut(s)	711
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	516, 600
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	4 cut(s)	84, 116, 282, 587
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	5 cut(s)	95, 305, 443, 536, 680
SmlI	CTYRAG	2 cut(s)	344, 419
SmoI	CTYRAG	2 cut(s)	344, 419
Sse9I	AATT	3 cut(s)	324, 507, 607
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	4 cut(s)	71, 110, 167, 482
SspMI	CTAG	2 cut(s)	158, 182
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	4, 711
StyI	CCWWGG	3 cut(s)	139, 278, 400
TaaI	ACNGT	3 cut(s)	385, 520, 682
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	268, 420, 528
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	324, 507, 607
TauI	GCSGC	2 cut(s)	113, 170
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	4 cut(s)	159, 192, 399, 475
TseFI	GTSAC	4 cut(s)	46, 244, 394, 430
TseI	GCWGC	4 cut(s)	107, 599, 665, 668
Tsp45I	GTSAC	4 cut(s)	46, 244, 394, 430
TspDTI	ATGAA	5 cut(s)	79, 355, 415, 427, 581
TspRI	CASTG	4 cut(s)	159, 192, 399, 475
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	4 cut(s)	84, 116, 282, 587
XceI	RCATGY	1 cut(s)	174
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	2 cut(s)	158, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.