RchiOBHm_Chr7g0188201

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
7831000 .. 7836699
5700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16805

Sequence Viewer

Length: 906 bp
ATGCCGGAATCTGAGCAAGGAACCCCGCCGGTGTCAGCACCGGCGACACCGGGGACACCAGCTCCGCTGTTTTCAGGACTGGTCGGAAGAGTGGACTCGCTGTCGTATGACCGGAAGTCAATGCCGCGATGCAATAAGTGCTTGCCTGTGAATGCTCCCACGTGGGGTGAACCTCACACGTGCTTCACCGACTTCCCGACTCCCGATGTCTCCCTCACCCGCAAGATTGGAGCTGAGTTCGTGGGAACGTTCATCCTGATGTTTGCTGCTACGGCCGGACCTATCGTGAACCAGAAGTACAATGGAGCAGAGTCCCTTATCGGAAATGCAGCATGCGCCGGACTTGGAGTGATGATCGTGATTCTTTCCACGGGCCACATCTCCGGTGCACACCTGAACCCGTCTCTCACCATTGCTTTCGCATGCCTGCGTCATTTCCCGTGGACTCAAGTCCCTGCCTACATAGCCGCCCAGGTCTCGGCATCCATCTGTGCTTGTTTTGCCCTCAAGGGGGTGTACCATCCCTACATGTCCGGCGGAGTCACGGTGCCTTCTGTGAGCGATGGCCAGGCTTTTGCTCTTGAGTTCATCATCACTTTCAATCTCCTGTTCGTGGTCACTGCTGTTGCTACCGATACACGTGCGGTGGGAGAGTTGGCTGGTTTAGCTGTTGGGGCAACTGTGATGCTAAATATTCTTATAGCTGGACCATCAAGTGGCGGTTCGATGAACCCTGTGCGAACTCTAGGCCCTGCAGTGGCCGCTGGAAACTATAGGGCATTGTGGATATACCTGGTGGCCCCCACGCTCGGTGCCCTGGCCGGGGCCGGAACCTACACAGCCGTGAAGCTTCGGGGCGACGAGATAGGATCTCCGACTCGTGAGGTCAGGAGCTTTCGTCGTTAA

Protein Analysis

301

Amino Acids

31.27

Weight (kDa)

8.48

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 70 - 279 5e-52 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 547, 812
AccB7I CCANNNNNTGG 1 cut(s) 716
AccII CGCG 1 cut(s) 127
AciI CCGC 9 cut(s) 26, 65, 125, 220, 468, 537, 644, 720, 762
AclI AACGTT 1 cut(s) 248
AclWI GGATC 1 cut(s) 877
AcoI YGGCCR 4 cut(s) 273, 565, 759, 819
AcvI CACGTG 3 cut(s) 162, 180, 641
AfaI GTAC 2 cut(s) 299, 518
AflIII ACRYGT 3 cut(s) 177, 528, 638
AgsI TTSAA 1 cut(s) 601
AhdI GACNNNNNGTC 2 cut(s) 100, 115
AjnI CCWGG 4 cut(s) 471, 567, 792, 816
AleI CACNNNNGTG 1 cut(s) 842
AluBI AGCT 6 cut(s) 62, 233, 668, 704, 850, 894
AluI AGCT 6 cut(s) 62, 233, 668, 704, 850, 894
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 3 cut(s) 214, 408, 481
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 1 cut(s) 877
AoxI GGCC 8 cut(s) 273, 373, 565, 748, 759, 798, 819, 825
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 266, 329
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 6 cut(s) 278, 373, 707, 749, 799, 825
AsuC2I CCSGG 2 cut(s) 51, 823
AsuHPI GGTGA 4 cut(s) 178, 179, 208, 400
AvaII GGWCC 2 cut(s) 278, 707
BaeGI GKGCMC 2 cut(s) 391, 817
BalI TGGCCA 1 cut(s) 567
BanI GGYRCC 2 cut(s) 547, 812
BauI CACGAG 1 cut(s) 879
BbrPI CACGTG 3 cut(s) 162, 180, 641
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 253, 341
BccI CCATC 4 cut(s) 494, 528, 557, 718
BceAI ACGGC 2 cut(s) 288, 827
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 4 cut(s) 473, 569, 794, 818
BcnI CCSGG 2 cut(s) 51, 823
BcoDI GTCTC 3 cut(s) 214, 408, 481
BfaI CTAG 1 cut(s) 746
BfmI CTRYAG 2 cut(s) 753, 772
BisI GCNGC 5 cut(s) 125, 267, 330, 468, 762
BlsI GCNGC 5 cut(s) 126, 268, 331, 469, 763
Bme1390I CCNGG 6 cut(s) 51, 473, 569, 794, 818, 823
Bme18I GGWCC 2 cut(s) 278, 707
BmeRI GACNNNNNGTC 2 cut(s) 100, 115
BmgT120I GGNCC 6 cut(s) 278, 373, 707, 749, 799, 825
BmiI GGNNCC 6 cut(s) 22, 549, 801, 814, 826, 832
BmrFI CCNGG 6 cut(s) 51, 473, 569, 794, 818, 823
BmsI GCATC 3 cut(s) 119, 491, 675
BoxI GACNNNNGTC 1 cut(s) 449
BpuEI CTTGAG 3 cut(s) 432, 491, 602
BpuMI CCSGG 2 cut(s) 51, 823
BsaAI YACGTR 3 cut(s) 162, 180, 641
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 6 cut(s) 50, 369, 440, 471, 816, 822
BsaWI WCCGGW 2 cut(s) 111, 383
BsaXI ACNNNNNCTCC 5 cut(s) 46, 76, 531, 561, 883
Bse118I RCCGGY 2 cut(s) 28, 40
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 4 cut(s) 473, 569, 794, 818
BseDI CCNNGG 6 cut(s) 50, 369, 440, 471, 816, 822
BseGI GGATG 3 cut(s) 252, 482, 520
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 84
BseSI GKGCMC 2 cut(s) 391, 817
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 253, 341
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 8 cut(s) 275, 375, 567, 750, 761, 800, 821, 827
BshNI GGYRCC 2 cut(s) 547, 812
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 391
BslFI GGGAC 3 cut(s) 67, 298, 437
BsmAI GTCTC 3 cut(s) 214, 408, 481
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 3 cut(s) 67, 298, 437
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 8 cut(s) 275, 375, 567, 750, 761, 800, 821, 827
Bso31I GGTCTC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 391, 817
Bsp143I GATC 2 cut(s) 354, 869
BspACI CCGC 9 cut(s) 26, 65, 125, 220, 468, 537, 644, 720, 762
BspANI GGCC 8 cut(s) 275, 375, 567, 750, 761, 800, 821, 827
BspCNI CTCAG 2 cut(s) 4, 226
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 22, 549, 801, 814, 826, 832
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 1 cut(s) 877
BspT107I GGYRCC 2 cut(s) 547, 812
BspTNI GGTCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 2 cut(s) 28, 40
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 2 cut(s) 28, 40
BssECI CCNNGG 6 cut(s) 50, 369, 440, 471, 816, 822
BssMI GATC 2 cut(s) 354, 869
BssSI CACGAG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 4 cut(s) 473, 569, 794, 818
Bst4CI ACNGT 2 cut(s) 547, 682
Bst6I CTCTTC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBAI YACGTR 3 cut(s) 162, 180, 641
BstC8I GCNNGC 4 cut(s) 143, 334, 424, 428
BstDEI CTNAG 2 cut(s) 12, 234
BstDSI CCRYGG 2 cut(s) 369, 440
BstF5I GGATG 3 cut(s) 252, 482, 520
BstFNI CGCG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 357, 872
BstMAI GTCTC 3 cut(s) 214, 408, 481
BstMBI GATC 2 cut(s) 354, 869
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 8 cut(s) 138, 272, 335, 464, 500, 665, 674, 761
BstNI CCWGG 4 cut(s) 473, 569, 794, 818
BstNSI RCATGY 3 cut(s) 336, 426, 532
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 6 cut(s) 49, 471, 567, 792, 816, 821
BstSFI CTRYAG 2 cut(s) 753, 772
BstSLI GKGCMC 2 cut(s) 391, 817
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 253, 341
BstX2I RGATCY 1 cut(s) 869
BstYI RGATCY 1 cut(s) 869
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 8 cut(s) 275, 375, 567, 750, 761, 800, 821, 827
BtgI CCRYGG 2 cut(s) 369, 440
BtgZI GCGATG 2 cut(s) 142, 576
BtsCI GGATG 3 cut(s) 252, 482, 520
BtsI GCAGTG 2 cut(s) 618, 762
BtsIMutI CAGTG 2 cut(s) 618, 762
Cac8I GCNNGC 4 cut(s) 143, 334, 424, 428
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 2 cut(s) 28, 40
Cfr13I GGNCC 6 cut(s) 278, 373, 707, 749, 799, 825
CseI GACGC 1 cut(s) 419
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 2 cut(s) 298, 517
CviAII CATG 3 cut(s) 333, 423, 529
CviQI GTAC 2 cut(s) 298, 517
DdeI CTNAG 2 cut(s) 12, 234
DpnI GATC 2 cut(s) 356, 871
DpnII GATC 2 cut(s) 354, 869
DriI GACNNNNNGTC 2 cut(s) 100, 115
EaeI YGGCCR 4 cut(s) 273, 565, 759, 819
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 2 cut(s) 100, 115
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 552
EclXI CGGCCG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 278, 707
Eco52I CGGCCG 1 cut(s) 273
Eco72I CACGTG 3 cut(s) 162, 180, 641
EcoO109I RGGNCCY 1 cut(s) 749
EcoRII CCWGG 4 cut(s) 471, 567, 792, 816
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 3 cut(s) 336, 426, 532
FaiI YATR 8 cut(s) 108, 334, 424, 464, 530, 701, 774, 790
FaqI GGGAC 3 cut(s) 67, 298, 437
FatI CATG 3 cut(s) 332, 422, 528
FauI CCCGC 2 cut(s) 33, 227
Fnu4HI GCNGC 5 cut(s) 125, 267, 330, 468, 762
FokI GGATG 3 cut(s) 239, 469, 507
Fsp4HI GCNGC 5 cut(s) 125, 267, 330, 468, 762
FspBI CTAG 1 cut(s) 746
GlaI GCGC 1 cut(s) 337
GluI GCNGC 5 cut(s) 125, 267, 330, 468, 762
HaeIII GGCC 8 cut(s) 275, 375, 567, 750, 761, 800, 821, 827
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 338
Hin1II CATG 3 cut(s) 336, 426, 532
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 8 cut(s) 8, 95, 199, 311, 361, 445, 540, 877
HphI GGTGA 4 cut(s) 178, 179, 208, 400
Hpy166II GTNNAC 6 cut(s) 94, 170, 289, 389, 444, 517
Hpy188I TCNGA 4 cut(s) 13, 86, 323, 876
Hpy188III TCNNGA 9 cut(s) 75, 196, 203, 256, 286, 358, 581, 881, 889
Hpy8I GTNNAC 6 cut(s) 94, 170, 289, 389, 444, 517
Hpy99I CGWCG 2 cut(s) 863, 903
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 2 cut(s) 547, 682
HpyCH4IV ACGT 4 cut(s) 161, 179, 248, 640
HpyCH4V TGCA 4 cut(s) 132, 329, 389, 755
HpyF10VI GCNNNNNNNGC 8 cut(s) 138, 272, 335, 464, 500, 665, 674, 761
HpyF3I CTNAG 2 cut(s) 12, 234
HpySE526I ACGT 4 cut(s) 161, 179, 248, 640
Hsp92II CATG 3 cut(s) 336, 426, 532
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 354, 869
LmnI GCTCC 5 cut(s) 67, 160, 230, 305, 891
Lsp1109I GCAGC 2 cut(s) 253, 341
LweI GCATC 3 cut(s) 119, 491, 675
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 1 cut(s) 746
MaeII ACGT 4 cut(s) 161, 179, 248, 640
MaeIII GTNAC 2 cut(s) 541, 616
MalI GATC 2 cut(s) 356, 871
MboI GATC 2 cut(s) 354, 869
MboII GAAGA 1 cut(s) 99
MflI RGATCY 1 cut(s) 869
MhlI GDGCHC 2 cut(s) 391, 817
MlsI TGGCCA 1 cut(s) 567
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 6 cut(s) 89, 193, 320, 439, 549, 871
MmeI TCCRAC 2 cut(s) 64, 899
MnlI CCTC 4 cut(s) 183, 224, 515, 877
Mox20I TGGCCA 1 cut(s) 567
MscI TGGCCA 1 cut(s) 567
MseI TTAA 1 cut(s) 904
MslI CAYNNNNRTG 2 cut(s) 257, 842
Msp20I TGGCCA 1 cut(s) 567
MspA1I CMGCKG 2 cut(s) 67, 764
MspR9I CCNGG 6 cut(s) 51, 473, 569, 794, 818, 823
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 4 cut(s) 473, 569, 794, 818
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 8 cut(s) 138, 272, 335, 464, 500, 665, 674, 761
NciI CCSGG 2 cut(s) 51, 823
NdeII GATC 2 cut(s) 354, 869
NlaIII CATG 3 cut(s) 336, 426, 532
NlaIV GGNNCC 6 cut(s) 22, 549, 801, 814, 826, 832
NmeAIII GCCGAG 1 cut(s) 458
NmuCI GTSAC 2 cut(s) 541, 616
NspI RCATGY 3 cut(s) 336, 426, 532
OliI CACNNNNGTG 1 cut(s) 842
PaeI GCATGC 2 cut(s) 336, 426
PciI ACATGT 1 cut(s) 528
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 8, 361
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 5 cut(s) 126, 268, 331, 469, 763
PleI GAGTC 6 cut(s) 89, 193, 319, 439, 548, 871
PmaCI CACGTG 3 cut(s) 162, 180, 641
PmlI CACGTG 3 cut(s) 162, 180, 641
PpsI GAGTC 6 cut(s) 89, 193, 319, 439, 548, 871
Ppu21I YACGTR 3 cut(s) 162, 180, 641
PscI ACATGT 1 cut(s) 528
PshAI GACNNNNGTC 1 cut(s) 449
Psp1406I AACGTT 1 cut(s) 248
Psp6I CCWGG 4 cut(s) 471, 567, 792, 816
PspCI CACGTG 3 cut(s) 162, 180, 641
PspGI CCWGG 4 cut(s) 471, 567, 792, 816
PspN4I GGNNCC 6 cut(s) 22, 549, 801, 814, 826, 832
PspPI GGNCC 6 cut(s) 278, 373, 707, 749, 799, 825
PsrI GAACNNNNNNTAC 2 cut(s) 281, 313
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 869
RsaI GTAC 2 cut(s) 299, 518
RsaNI GTAC 2 cut(s) 298, 517
RseI CAYNNNNRTG 2 cut(s) 257, 842
SaqAI TTAA 1 cut(s) 904
SatI GCNGC 5 cut(s) 125, 267, 330, 468, 762
Sau3AI GATC 2 cut(s) 354, 869
Sau96I GGNCC 6 cut(s) 278, 373, 707, 749, 799, 825
SchI GAGTC 6 cut(s) 89, 193, 320, 439, 549, 871
ScrFI CCNGG 6 cut(s) 51, 473, 569, 794, 818, 823
SduI GDGCHC 2 cut(s) 391, 817
SexAI ACCWGGT 1 cut(s) 792
SfaNI GCATC 3 cut(s) 119, 491, 675
SfcI CTRYAG 2 cut(s) 753, 772
SgrAI CRCCGGYG 2 cut(s) 28, 40
SinI GGWCC 2 cut(s) 278, 707
SmiMI CAYNNNNRTG 2 cut(s) 257, 842
SmlI CTYRAG 3 cut(s) 447, 506, 581
SmoI CTYRAG 3 cut(s) 447, 506, 581
SphI GCATGC 2 cut(s) 336, 426
SsiI CCGC 9 cut(s) 26, 65, 125, 220, 468, 537, 644, 720, 762
SspI AATATT 1 cut(s) 694
SspMI CTAG 1 cut(s) 746
StyD4I CCNGG 6 cut(s) 49, 471, 567, 792, 816, 821
TaaI ACNGT 2 cut(s) 547, 682
TaiI ACGT 4 cut(s) 164, 182, 251, 643
TaqI TCGA 1 cut(s) 725
TatI WGTACW 1 cut(s) 297
TauI GCSGC 3 cut(s) 127, 470, 764
TfiI GAWTC 2 cut(s) 8, 361
Tru1I TTAA 1 cut(s) 904
Tru9I TTAA 1 cut(s) 904
TscAI CASTG 2 cut(s) 625, 762
TseFI GTSAC 2 cut(s) 541, 616
TseI GCWGC 2 cut(s) 266, 329
Tsp45I GTSAC 2 cut(s) 541, 616
TspDTI ATGAA 3 cut(s) 241, 577, 743
TspRI CASTG 2 cut(s) 625, 762
Van91I CCANNNNNTGG 1 cut(s) 716
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 2 cut(s) 278, 707
XceI RCATGY 3 cut(s) 336, 426, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.