Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Forward (+)

67986992 .. 67990094

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCCAGGAAGCAGAAGCTTGAAGAGCTTCCTTGTGCTCGATGCCACTTTTATCCGTAAGGTTGGAGCGGAGTTTGTTGGGACCTTCATTATGATATTTGCGGCAGCAGCAGCAGCAGCACCAATCGTGAACCAAAAGTACGATGGCGCGGAGACACTGCTAGGCAACGCAACATGTGCAAGGCTAGCAGTGATGGTAGTGGTTTTGTCCATCGGCCACATCTCCGGAGCACACCTAAACCCATCAGTCACTATCGCATTTGCAGCGTTTCAACACTTCCCATGTTTTGCTCTCAAGGGTGTTTTTCATCCATTTATGAACGGTGGAGTTACAATTCCTTCAGTAGGTAATGGCCAAGCTTTTGCACGCGAGTTCATTGTCACTTTCAACCTCATGTTTGTCATCATTTTTGTTGCCACAGATACCCGCGCCATGCGGTATGTAGGGGAGTTGGCAGGTTTAGCAATTGGAGCTACAGTATTGCTCGACATTCTTATAGCAGGGCAAACAACCGGCGCTTCAATGAATCCGGTCCGGACTTTGGGGCCGGCAGTGGCTGCAGGACATTATAAGTCACTGTGGATCTACTTGGTTGCCCCAAGACTTGGTGCTTTAGCTGGTGCTGCTGCCCACACAGCTGCGAAGCTCTCAGAAATCCGACCAAACCAGCAGTTCCAAAGAGGACGTCCGCACTTTAGGGAAAGTGCGGACGGCGACGCTGCAGCTCTGCTCGGGGCGCGACGAAGCGGCGGGGGTTGTCGGAAGGACGCCAGGGGTCGCGCGGAGAGGCCCGTTCCAAAGCGGACGTCCGCACTTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

273

Amino Acids

28.75

Weight (kDa)

10.56

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 95	1.3e-15	Major intrinsic protein
MIP	PF00230	111 - 210	3.9e-25	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AatII	GACGTC	2 cut(s)	688, 809
Acc36I	ACCTGC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	6 cut(s)	149, 369, 429, 739, 780, 782
AccIII	TCCGGA	2 cut(s)	224, 534
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	2 cut(s)	214, 352
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	3 cut(s)	685, 768, 806
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	344, 541, 605
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	22, 272, 388, 522
AjnI	CCWGG	2 cut(s)	4, 770
AluBI	AGCT	8 cut(s)	18, 27, 359, 473, 617, 638, 646, 725
AluI	AGCT	8 cut(s)	18, 27, 359, 473, 617, 638, 646, 725
Alw21I	GWGCWC	2 cut(s)	39, 232
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	731
Aor13HI	TCCGGA	2 cut(s)	224, 534
AoxI	GGCC	4 cut(s)	214, 352, 545, 788
ArsI	GACNNNNNNTTYG	3 cut(s)	670, 702, 791
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	5 cut(s)	149, 431, 518, 739, 782
AspS9I	GGNCC	4 cut(s)	81, 532, 545, 789
AsuNHI	GCTAGC	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	81, 532
BalI	TGGCCA	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	39, 232
BccI	CCATC	4 cut(s)	137, 187, 218, 250
BceAI	ACGGC	1 cut(s)	727
BciT130I	CCWGG	2 cut(s)	6, 772
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	2 cut(s)	161, 185
BfmI	CTRYAG	3 cut(s)	474, 558, 720
BfoI	RGCGCY	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	446
Bme1390I	CCNGG	2 cut(s)	6, 772
Bme18I	GGWCC	2 cut(s)	81, 532
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	4 cut(s)	81, 532, 545, 789
BmiI	GGNNCC	2 cut(s)	82, 546
BmrFI	CCNGG	2 cut(s)	6, 772
BmsI	GCATC	1 cut(s)	31
BmtI	GCTAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	278
BsaHI	GRCGYC	3 cut(s)	685, 768, 806
BsaJI	CCNNGG	1 cut(s)	771
BsaWI	WCCGGW	3 cut(s)	224, 529, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 541, 605
Bse118I	RCCGGY	2 cut(s)	512, 547
BseAI	TCCGGA	2 cut(s)	224, 534
BseBI	CCWGG	2 cut(s)	6, 772
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	344, 541, 605
BseMII	CTCAG	1 cut(s)	663
Bsh1236I	CGCG	6 cut(s)	149, 369, 429, 739, 780, 782
BshFI	GGCC	4 cut(s)	216, 354, 547, 790
BsiHKAI	GWGCWC	2 cut(s)	39, 232
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	5 cut(s)	225, 513, 530, 535, 548
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	344, 541, 605
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	4 cut(s)	216, 354, 547, 790
BsoBI	CYCGRG	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	39, 232
Bsp13I	TCCGGA	2 cut(s)	224, 534
Bsp143I	GATC	1 cut(s)	582
BspANI	GGCC	4 cut(s)	216, 354, 547, 790
BspCNI	CTCAG	1 cut(s)	662
BspEI	TCCGGA	2 cut(s)	224, 534
BspFNI	CGCG	6 cut(s)	149, 369, 429, 739, 780, 782
BspLI	GGNNCC	2 cut(s)	82, 546
BspMAI	CTGCAG	2 cut(s)	562, 724
BspMI	ACCTGC	1 cut(s)	446
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	590
BspQI	GCTCTTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	68
BsrFI	RCCGGY	2 cut(s)	512, 547
BssAI	RCCGGY	2 cut(s)	512, 547
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	1 cut(s)	582
BssNI	GRCGYC	3 cut(s)	685, 768, 806
Bst2UI	CCWGG	2 cut(s)	6, 772
Bst4CI	ACNGT	3 cut(s)	323, 478, 579
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	3 cut(s)	685, 768, 806
BstAPI	GCANNNNNTGC	2 cut(s)	176, 557
BstC8I	GCNNGC	3 cut(s)	186, 367, 549
BstDEI	CTNAG	1 cut(s)	649
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	6 cut(s)	149, 369, 429, 739, 780, 782
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	5 cut(s)	149, 431, 518, 739, 782
BstKTI	GATC	1 cut(s)	585
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	582
BstNI	CCWGG	2 cut(s)	6, 772
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	4, 770
BstSFI	CTRYAG	3 cut(s)	474, 558, 720
BstUI	CGCG	6 cut(s)	149, 369, 429, 739, 780, 782
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
BsuRI	GGCC	4 cut(s)	216, 354, 547, 790
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	3 cut(s)	155, 195, 558
BtsIMutI	CAGTG	4 cut(s)	155, 195, 558, 575
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	186, 367, 549
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	5 cut(s)	149, 431, 518, 739, 782
Cfr10I	RCCGGY	2 cut(s)	512, 547
Cfr13I	GGNCC	4 cut(s)	81, 532, 545, 789
CpoI	CGGWCCG	1 cut(s)	532
CseI	GACGC	2 cut(s)	725, 776
Csp6I	GTAC	1 cut(s)	139
CspI	CGGWCCG	1 cut(s)	532
CviAII	CATG	4 cut(s)	174, 282, 394, 433
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	649
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
EaeI	YGGCCR	2 cut(s)	214, 352
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	81, 532
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	4, 770
FaeI	CATG	4 cut(s)	177, 285, 397, 436
FaiI	YATR	9 cut(s)	92, 175, 283, 317, 395, 434, 441, 497, 570
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	4 cut(s)	173, 281, 393, 432
FauI	CCCGC	2 cut(s)	434, 743
FokI	GGATG	1 cut(s)	294
FspBI	CTAG	2 cut(s)	161, 185
GlaI	GCGC	5 cut(s)	148, 430, 517, 738, 781
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	216, 354, 547, 790
HapII	CCGG	5 cut(s)	225, 513, 530, 535, 548
HgaI	GACGC	2 cut(s)	725, 776
HhaI	GCGC	5 cut(s)	149, 431, 518, 739, 782
Hin1I	GRCGYC	3 cut(s)	685, 768, 806
Hin1II	CATG	4 cut(s)	177, 285, 397, 436
Hin6I	GCGC	5 cut(s)	147, 429, 516, 737, 780
HinP1I	GCGC	5 cut(s)	147, 429, 516, 737, 780
HindIII	AAGCTT	2 cut(s)	16, 357
HinfI	GANTC	1 cut(s)	526
HpaII	CCGG	5 cut(s)	225, 513, 530, 535, 548
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	652, 659, 762
Hpy188III	TCNNGA	3 cut(s)	127, 225, 535
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	719, 744
HpyAV	CCTTC	3 cut(s)	94, 348, 757
HpyCH4III	ACNGT	3 cut(s)	323, 478, 579
HpyCH4IV	ACGT	2 cut(s)	685, 806
HpyCH4V	TGCA	5 cut(s)	179, 263, 365, 560, 722
HpyF3I	CTNAG	1 cut(s)	649
HpySE526I	ACGT	2 cut(s)	685, 806
Hsp92I	GRCGYC	3 cut(s)	685, 768, 806
Hsp92II	CATG	4 cut(s)	177, 285, 397, 436
HspAI	GCGC	5 cut(s)	147, 429, 516, 737, 780
Kpn2I	TCCGGA	2 cut(s)	224, 534
KroI	GCCGGC	1 cut(s)	547
KroNI	GCCGGC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	582
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	3 cut(s)	65, 227, 470
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	161, 185
MaeII	ACGT	2 cut(s)	685, 806
MaeIII	GTNAC	4 cut(s)	247, 328, 379, 573
MalI	GATC	1 cut(s)	584
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	1 cut(s)	582
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	2 cut(s)	39, 232
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	2 cut(s)	333, 465
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	3 cut(s)	43, 682, 740
MnlI	CCTC	3 cut(s)	401, 674, 780
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	2 cut(s)	224, 534
MroNI	GCCGGC	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	5 cut(s)	225, 513, 530, 535, 548
MspR9I	CCNGG	2 cut(s)	6, 772
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	6, 772
MvnI	CGCG	6 cut(s)	149, 369, 429, 739, 780, 782
NaeI	GCCGGC	1 cut(s)	549
NdeII	GATC	1 cut(s)	582
NgoMIV	GCCGGC	1 cut(s)	547
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	4 cut(s)	177, 285, 397, 436
NlaIV	GGNNCC	2 cut(s)	82, 546
NmuCI	GTSAC	3 cut(s)	247, 379, 573
NspI	RCATGY	1 cut(s)	177
PciI	ACATGT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	17
PdiI	GCCGGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	81
PscI	ACATGT	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	4, 770
PspGI	CCWGG	2 cut(s)	4, 770
PspN4I	GGNNCC	2 cut(s)	82, 546
PspPI	GGNCC	4 cut(s)	81, 532, 545, 789
PspPPI	RGGWCCY	1 cut(s)	81
PsrI	GAACNNNNNNTAC	2 cut(s)	122, 154
PstI	CTGCAG	2 cut(s)	562, 724
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
Rsr2I	CGGWCCG	1 cut(s)	532
RsrII	CGGWCCG	1 cut(s)	532
SapI	GCTCTTC	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	4 cut(s)	81, 532, 545, 789
ScrFI	CCNGG	2 cut(s)	6, 772
SduI	GDGCHC	2 cut(s)	39, 232
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	3 cut(s)	474, 558, 720
SinI	GGWCC	2 cut(s)	81, 532
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	333, 465
SspMI	CTAG	2 cut(s)	161, 185
StyD4I	CCNGG	2 cut(s)	4, 770
TaaI	ACNGT	3 cut(s)	323, 478, 579
TaiI	ACGT	2 cut(s)	688, 809
TaqI	TCGA	2 cut(s)	39, 486
TasI	AATT	2 cut(s)	333, 465
TauI	GCSGC	2 cut(s)	104, 750
TfiI	GAWTC	1 cut(s)	526
TscAI	CASTG	4 cut(s)	162, 195, 558, 582
TseFI	GTSAC	3 cut(s)	247, 379, 573
Tsp45I	GTSAC	3 cut(s)	247, 379, 573
TspDTI	ATGAA	5 cut(s)	76, 296, 332, 364, 539
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	4 cut(s)	162, 195, 558, 582
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	81, 532
XagI	CCTNNNNNAGG	1 cut(s)	342
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	161, 185
ZraI	GACGTC	2 cut(s)	686, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.