Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Reverse (-)

26497388 .. 26501712

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTCTGCGATTCAGAATCCTCTCTTTTTTGGGTTTTTTTGCTCGACGCAGAGAGAGAAGAGTGCAGAGGAGAGTTTGTTTCCGCTGGTGGTTGTTATTGCTGATGAAAAACATCCCCGGAGATTGGGGTTTTGATTGCTGCATCTCTTATGGCGATCTGGAGTTTTCAGCAAAAGAAGAAGGGGTTTTATTTTCAACAAAAGCAAACTTCCAGCCAAAATGGAGGAGATTAATGTCCCAATCTCCCTTGATTTACAGCAAGGAAAGAGCAAAAGTCAAAACTTTGAACATCAAAGACAAGATAATGTTGACTGGCAAGAGACTCCAGTTGCAGGTTGGAGCTATTGTTGGACTTGATCAATATGTCAACTACTTCAAAATTCAGCTGAGGATACAACAGAGGATTAAAAGCGCAGAGCTCAGGATGTTAACCAAGGAGCAAGAAAATGAACTTCCGAACTTTACACCATTCATTCCATTGATGTCTCCCTTGTTCGGGACTGATTATGAAAAGAACAATTTCAAAAGTATTAATGAAGTTGATCCCATAGTAGCATCCTTCTCTGCAGGAGCAGTTGGACTGATCTCAGCACTGATGATGGTTGAAATAATAAGCAAAACACTGCAGGAGCATCAGAGATGTAAATATTGTCTTGGAACTGCTTATGGCTCATCTTCTGATGCAATGACTATAATCCAACAAAGATCTCCTGTTGTTAAGGGGATGATGATTGAATTTGCTAAGAACTCAGTTGATTATGTTACCGCCAGCGCCCAGCGGAAAGAAGCATGTTATTGTGTTTTCAAGCTTAAACTTTCAGGGGTGGCAGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

279

Amino Acids

32.11

Weight (kDa)

9.68

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	3 cut(s)	85, 768, 781
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	2 cut(s)	381, 737
AfiI	CCNNNNNNNGG	4 cut(s)	126, 334, 497, 498
AgsI	TTSAA	7 cut(s)	198, 289, 379, 526, 608, 737, 808
AluBI	AGCT	4 cut(s)	344, 388, 421, 811
AluI	AGCT	4 cut(s)	344, 388, 421, 811
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	316, 492
AlwI	GGATC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	2 cut(s)	381, 737
AseI	ATTAAT	2 cut(s)	233, 534
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	416, 776
AsuC2I	CCSGG	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	595
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	316, 492
BfmI	CTRYAG	2 cut(s)	567, 626
BfoI	RGCGCY	1 cut(s)	777
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	4 cut(s)	153, 566, 643, 673
BpmI	CTGGAG	2 cut(s)	182, 311
Bpu10I	CCTNAGC	2 cut(s)	389, 422
BpuMI	CCSGG	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	118, 435
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 333, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 334, 497, 498
Bse1I	ACTGG	2 cut(s)	319, 328
Bse3DI	GCAATG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	118, 435
BseGI	GGATG	4 cut(s)	114, 432, 557, 732
BseLI	CCNNNNNNNGG	4 cut(s)	126, 334, 497, 498
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	4 cut(s)	380, 436, 603, 765
BseNI	ACTGG	2 cut(s)	319, 328
BseRI	GAGGAG	2 cut(s)	85, 241
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	777
BsgI	GTGCAG	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	223, 514
BslI	CCNNNNNNNGG	4 cut(s)	126, 334, 497, 498
BsmAI	GTCTC	2 cut(s)	316, 492
BsmFI	GGGAC	2 cut(s)	223, 514
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	5 cut(s)	157, 358, 544, 585, 707
BspACI	CCGC	3 cut(s)	85, 768, 781
BspCNI	CTCAG	4 cut(s)	381, 435, 602, 764
BspMAI	CTGCAG	2 cut(s)	571, 630
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	319, 328
BssECI	CCNNGG	2 cut(s)	118, 435
BssMI	GATC	5 cut(s)	157, 358, 544, 585, 707
BssT1I	CCWWGG	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	5 cut(s)	389, 422, 589, 744, 751
BstF5I	GGATG	4 cut(s)	114, 432, 557, 732
BstH2I	RGCGCY	1 cut(s)	777
BstHHI	GCGC	2 cut(s)	416, 776
BstKTI	GATC	5 cut(s)	160, 361, 547, 588, 710
BstMAI	GTCTC	2 cut(s)	316, 492
BstMBI	GATC	5 cut(s)	157, 358, 544, 585, 707
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	2 cut(s)	567, 626
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	387
BtsCI	GGATG	4 cut(s)	114, 432, 557, 732
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	2 cut(s)	593, 623
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	772
CfoI	GCGC	2 cut(s)	416, 776
CseI	GACGC	1 cut(s)	57
CviAII	CATG	1 cut(s)	792
CviJI	RGCY	7 cut(s)	5, 217, 344, 388, 421, 672, 811
CviKI_1	RGCY	7 cut(s)	5, 217, 344, 388, 421, 672, 811
DdeI	CTNAG	5 cut(s)	389, 422, 589, 744, 751
DpnI	GATC	5 cut(s)	159, 360, 546, 587, 709
DpnII	GATC	5 cut(s)	157, 358, 544, 585, 707
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	1 cut(s)	795
FaiI	YATR	8 cut(s)	153, 366, 510, 551, 669, 695, 762, 793
FaqI	GGGAC	2 cut(s)	223, 514
FatI	CATG	1 cut(s)	791
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	4 cut(s)	101, 439, 544, 739
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	2 cut(s)	415, 775
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	781
GsuI	CTGGAG	2 cut(s)	182, 311
HaeII	RGCGCY	1 cut(s)	777
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	416, 776
Hin1II	CATG	1 cut(s)	795
Hin6I	GCGC	2 cut(s)	414, 774
HinP1I	GCGC	2 cut(s)	414, 774
HincII	GTYRAC	3 cut(s)	312, 370, 432
HindII	GTYRAC	3 cut(s)	312, 370, 432
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	3 cut(s)	12, 18, 324
HpaI	GTTAAC	1 cut(s)	432
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	3 cut(s)	312, 370, 432
Hpy188I	TCNGA	4 cut(s)	17, 459, 639, 682
Hpy188III	TCNNGA	3 cut(s)	161, 424, 499
Hpy8I	GTNNAC	3 cut(s)	312, 370, 432
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	176, 571
HpyCH4V	TGCA	6 cut(s)	67, 144, 334, 569, 628, 686
HpyF3I	CTNAG	5 cut(s)	389, 422, 589, 744, 751
Hsp92II	CATG	1 cut(s)	795
HspAI	GCGC	2 cut(s)	414, 774
Ksp22I	TGATCA	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	432
Kzo9I	GATC	5 cut(s)	157, 358, 544, 585, 707
LmnI	GCTCC	4 cut(s)	341, 439, 572, 631
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	4 cut(s)	153, 566, 643, 673
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	5 cut(s)	159, 360, 546, 587, 709
MboI	GATC	5 cut(s)	157, 358, 544, 585, 707
MboII	GAAGA	3 cut(s)	72, 191, 669
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	4 cut(s)	381, 520, 737, 835
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	4 cut(s)	319, 331, 559, 724
MnlI	CCTC	5 cut(s)	32, 63, 219, 384, 396
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	7 cut(s)	233, 408, 431, 534, 720, 813, 838
MspA1I	CMGCKG	3 cut(s)	87, 388, 781
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	5 cut(s)	157, 358, 544, 585, 707
NlaIII	CATG	1 cut(s)	795
NspI	RCATGY	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	12, 18
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PshBI	ATTAAT	2 cut(s)	233, 534
Psp124BI	GAGCTC	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	777
PstI	CTGCAG	2 cut(s)	571, 630
PsuI	RGATCY	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	7 cut(s)	233, 408, 431, 534, 720, 813, 838
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	5 cut(s)	157, 358, 544, 585, 707
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	5 cut(s)	339, 346, 390, 423, 813
SfaNI	GCATC	4 cut(s)	153, 566, 643, 673
SfcI	CTRYAG	2 cut(s)	567, 626
Sse9I	AATT	4 cut(s)	381, 520, 737, 835
SsiI	CCGC	3 cut(s)	85, 768, 781
SspI	AATATT	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	435
TaqI	TCGA	1 cut(s)	46
TasI	AATT	4 cut(s)	381, 520, 737, 835
TfiI	GAWTC	2 cut(s)	12, 18
Tru1I	TTAA	7 cut(s)	233, 408, 431, 534, 720, 813, 838
Tru9I	TTAA	7 cut(s)	233, 408, 431, 534, 720, 813, 838
TscAI	CASTG	2 cut(s)	600, 630
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	5 cut(s)	122, 463, 465, 525, 552
TspRI	CASTG	2 cut(s)	600, 630
VspI	ATTAAT	2 cut(s)	233, 534
XapI	RAATTY	2 cut(s)	381, 737
XceI	RCATGY	1 cut(s)	795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.