Rw7G008050

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
7378974 .. 7383666
4693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008050.1

Sequence Viewer

Length: 840 bp
ATGCCGGAATCTGAGCCAGGAACGCCGCCGGTGTCAGCGCCGGCGACACCGGGGACACCAGCTCCGCTGTTTTCAGGACTGGTCGGAAGAGTGGACTCGCTGTCGTATGACCGGAAGTCAATGCCGCGATGCAATAAGTGCTTGCCTGTGAATGCTCCCACGTGGGGTGAACCTCACACGTGCTTCACCGACTTCCCGACTCCCGATGTCTCCCTCACCCGCAAGATTGGAGCTGAGTTCGTGGGAACGTTCATCCTGATGTTTGCTGCTACGGCCGGACCTATCGTGAACCAGAAGTACAATGGAGCAGAGTCCCTTATCGGAAATGCAGCATGCGCCGGACTTGGAGTGATGATCGTGATTCTTTCCACGGGCCACATCTCCGGTGCACACCTGAACCCGTCTCTCACCATTGCTTTCGCATGCCTGCGTCATTTCCCGTGGACTCAAGTCCCTGCCTACATAGCCGCCCAGGGGGTGTACCATCCCTACATGTCCGGCGGAGTCACGGTGCCTTCTGTGAGCGATGGCCAGGCTTTTGCTCTTGAGTTCATCATCACTTTCAATCTCCTGTTCGTGGTCACTGCTTTGGCTGGTTTAGCTGTTGGGGCAACTGTCATGCTAAATATTCTTATAGCTGGACCATCAAGTGGTGGTTCGATGAACCCTGTGCGAACTCTGGGCCCTGCCGTGGCCGCTGGAAACTATAGGGCATTGTGGATATACCTGGTGGCCCCCACGCTGGGTGCCCTGGCTGGGGCCGGAACCTACACAGCCGTGAAGCTTCGGGGCGACGAGATAGGATCTCCGACTCGTGAGGTCAGGAGCTTTCGTCGTTAA

Protein Analysis

279

Amino Acids

29.05

Weight (kDa)

8.63

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 70 - 257 6.7e-34 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 511, 746
AccB7I CCANNNNNTGG 1 cut(s) 650
AccII CGCG 1 cut(s) 127
AciI CCGC 7 cut(s) 26, 65, 125, 220, 468, 501, 696
AclI AACGTT 1 cut(s) 248
AclWI GGATC 1 cut(s) 811
AcoI YGGCCR 3 cut(s) 273, 529, 693
AcvI CACGTG 2 cut(s) 162, 180
AfaI GTAC 2 cut(s) 299, 482
AfiI CCNNNNNNNGG 9 cut(s) 164, 474, 577, 650, 691, 742, 743, 756, 757
AflIII ACRYGT 2 cut(s) 177, 492
AgsI TTSAA 1 cut(s) 565
AhdI GACNNNNNGTC 2 cut(s) 100, 115
AjnI CCWGG 5 cut(s) 16, 471, 531, 726, 750
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 6 cut(s) 62, 233, 602, 638, 784, 828
AluI AGCT 6 cut(s) 62, 233, 602, 638, 784, 828
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 214, 408
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 1 cut(s) 811
AoxI GGCC 7 cut(s) 273, 373, 529, 682, 693, 732, 759
ApaI GGGCCC 1 cut(s) 686
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 266, 329
AspLEI GCGC 2 cut(s) 40, 338
AspS9I GGNCC 7 cut(s) 278, 373, 641, 682, 683, 733, 759
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 4 cut(s) 178, 179, 208, 400
AvaII GGWCC 2 cut(s) 278, 641
BaeGI GKGCMC 3 cut(s) 391, 686, 751
BalI TGGCCA 1 cut(s) 531
BanI GGYRCC 2 cut(s) 511, 746
BanII GRGCYC 1 cut(s) 686
BauI CACGAG 1 cut(s) 813
BbrPI CACGTG 2 cut(s) 162, 180
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 253, 341
BccI CCATC 3 cut(s) 492, 521, 652
BceAI ACGGC 3 cut(s) 288, 674, 761
BciT130I CCWGG 5 cut(s) 18, 473, 533, 728, 752
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 214, 408
BfmI CTRYAG 1 cut(s) 706
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 6 cut(s) 26, 125, 267, 330, 468, 696
BlsI GCNGC 6 cut(s) 27, 126, 268, 331, 469, 697
Bme1390I CCNGG 6 cut(s) 18, 51, 473, 533, 728, 752
Bme18I GGWCC 2 cut(s) 278, 641
BmeRI GACNNNNNGTC 2 cut(s) 100, 115
BmgT120I GGNCC 7 cut(s) 278, 373, 641, 682, 683, 733, 759
BmiI GGNNCC 6 cut(s) 513, 684, 735, 748, 760, 766
BmrFI CCNGG 6 cut(s) 18, 51, 473, 533, 728, 752
BmsI GCATC 1 cut(s) 119
BoxI GACNNNNGTC 1 cut(s) 449
BpuEI CTTGAG 2 cut(s) 432, 566
BpuMI CCSGG 1 cut(s) 51
BsaAI YACGTR 2 cut(s) 162, 180
BsaJI CCNNGG 7 cut(s) 50, 369, 440, 471, 472, 690, 750
BsaWI WCCGGW 2 cut(s) 111, 383
BsaXI ACNNNNNCTCC 5 cut(s) 46, 76, 495, 525, 817
Bsc4I CCNNNNNNNGG 9 cut(s) 164, 474, 577, 650, 691, 742, 743, 756, 757
Bse118I RCCGGY 2 cut(s) 28, 40
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 5 cut(s) 18, 473, 533, 728, 752
BseDI CCNNGG 7 cut(s) 50, 369, 440, 471, 472, 690, 750
BseGI GGATG 2 cut(s) 252, 484
BseLI CCNNNNNNNGG 9 cut(s) 164, 474, 577, 650, 691, 742, 743, 756, 757
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 84
BseSI GKGCMC 3 cut(s) 391, 686, 751
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 253, 341
BseYI CCCAGC 2 cut(s) 742, 755
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 7 cut(s) 275, 375, 531, 684, 695, 734, 761
BshNI GGYRCC 2 cut(s) 511, 746
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 391
BslFI GGGAC 3 cut(s) 67, 298, 437
BslI CCNNNNNNNGG 9 cut(s) 164, 474, 577, 650, 691, 742, 743, 756, 757
BsmAI GTCTC 2 cut(s) 214, 408
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 3 cut(s) 67, 298, 437
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 7 cut(s) 275, 375, 531, 684, 695, 734, 761
Bsp120I GGGCCC 1 cut(s) 682
Bsp1286I GDGCHC 3 cut(s) 391, 686, 751
Bsp143I GATC 2 cut(s) 354, 803
BspACI CCGC 7 cut(s) 26, 65, 125, 220, 468, 501, 696
BspANI GGCC 7 cut(s) 275, 375, 531, 684, 695, 734, 761
BspCNI CTCAG 2 cut(s) 4, 226
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 513, 684, 735, 748, 760, 766
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 2 cut(s) 511, 746
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 2 cut(s) 28, 40
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 2 cut(s) 28, 40
BssECI CCNNGG 7 cut(s) 50, 369, 440, 471, 472, 690, 750
BssMI GATC 2 cut(s) 354, 803
BssSI CACGAG 1 cut(s) 813
Bst2BI CACGAG 1 cut(s) 813
Bst2UI CCWGG 5 cut(s) 18, 473, 533, 728, 752
Bst4CI ACNGT 2 cut(s) 511, 616
Bst6I CTCTTC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBAI YACGTR 2 cut(s) 162, 180
BstC8I GCNNGC 5 cut(s) 42, 143, 334, 424, 428
BstDEI CTNAG 2 cut(s) 12, 234
BstDSI CCRYGG 3 cut(s) 369, 440, 690
BstF5I GGATG 2 cut(s) 252, 484
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 338
BstKTI GATC 2 cut(s) 357, 806
BstMAI GTCTC 2 cut(s) 214, 408
BstMBI GATC 2 cut(s) 354, 803
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 8 cut(s) 22, 138, 272, 335, 464, 599, 608, 695
BstNI CCWGG 5 cut(s) 18, 473, 533, 728, 752
BstNSI RCATGY 3 cut(s) 336, 426, 496
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 6 cut(s) 16, 49, 471, 531, 726, 750
BstSFI CTRYAG 1 cut(s) 706
BstSLI GKGCMC 3 cut(s) 391, 686, 751
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 253, 341
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 7 cut(s) 275, 375, 531, 684, 695, 734, 761
BtgI CCRYGG 3 cut(s) 369, 440, 690
BtgZI GCGATG 2 cut(s) 142, 540
BtsCI GGATG 2 cut(s) 252, 484
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 5 cut(s) 42, 143, 334, 424, 428
CfoI GCGC 2 cut(s) 40, 338
Cfr10I RCCGGY 2 cut(s) 28, 40
Cfr13I GGNCC 7 cut(s) 278, 373, 641, 682, 683, 733, 759
CseI GACGC 1 cut(s) 419
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 2 cut(s) 298, 481
CviAII CATG 4 cut(s) 333, 423, 493, 619
CviQI GTAC 2 cut(s) 298, 481
DdeI CTNAG 2 cut(s) 12, 234
DpnI GATC 2 cut(s) 356, 805
DpnII GATC 2 cut(s) 354, 803
DriI GACNNNNNGTC 2 cut(s) 100, 115
EaeI YGGCCR 3 cut(s) 273, 529, 693
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 2 cut(s) 100, 115
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 516
EclXI CGGCCG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 686
Eco47I GGWCC 2 cut(s) 278, 641
Eco52I CGGCCG 1 cut(s) 273
Eco72I CACGTG 2 cut(s) 162, 180
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 5 cut(s) 16, 471, 531, 726, 750
EcoT38I GRGCYC 1 cut(s) 686
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 4 cut(s) 336, 426, 496, 622
FaiI YATR 9 cut(s) 108, 334, 424, 464, 494, 620, 635, 708, 724
FaqI GGGAC 3 cut(s) 67, 298, 437
FatI CATG 4 cut(s) 332, 422, 492, 618
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 6 cut(s) 26, 125, 267, 330, 468, 696
FokI GGATG 2 cut(s) 239, 471
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 6 cut(s) 26, 125, 267, 330, 468, 696
GlaI GCGC 2 cut(s) 39, 337
GluI GCNGC 6 cut(s) 26, 125, 267, 330, 468, 696
GsaI CCCAGC 2 cut(s) 746, 759
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 7 cut(s) 275, 375, 531, 684, 695, 734, 761
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 40, 338
Hin1II CATG 4 cut(s) 336, 426, 496, 622
Hin6I GCGC 2 cut(s) 38, 336
HinP1I GCGC 2 cut(s) 38, 336
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 8 cut(s) 8, 95, 199, 311, 361, 445, 504, 811
HphI GGTGA 4 cut(s) 178, 179, 208, 400
Hpy166II GTNNAC 6 cut(s) 94, 170, 289, 389, 444, 481
Hpy188I TCNGA 4 cut(s) 13, 86, 323, 810
Hpy188III TCNNGA 9 cut(s) 75, 196, 203, 256, 286, 358, 545, 815, 823
Hpy8I GTNNAC 6 cut(s) 94, 170, 289, 389, 444, 481
Hpy99I CGWCG 2 cut(s) 797, 837
HpyAV CCTTC 1 cut(s) 525
HpyCH4III ACNGT 2 cut(s) 511, 616
HpyCH4IV ACGT 3 cut(s) 161, 179, 248
HpyCH4V TGCA 3 cut(s) 132, 329, 389
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 138, 272, 335, 464, 599, 608, 695
HpyF3I CTNAG 2 cut(s) 12, 234
HpySE526I ACGT 3 cut(s) 161, 179, 248
Hsp92II CATG 4 cut(s) 336, 426, 496, 622
HspAI GCGC 2 cut(s) 38, 336
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 354, 803
LmnI GCTCC 5 cut(s) 67, 160, 230, 305, 825
Lsp1109I GCAGC 2 cut(s) 253, 341
LweI GCATC 1 cut(s) 119
MabI ACCWGGT 1 cut(s) 726
MaeII ACGT 3 cut(s) 161, 179, 248
MaeIII GTNAC 2 cut(s) 505, 580
MalI GATC 2 cut(s) 356, 805
MboI GATC 2 cut(s) 354, 803
MboII GAAGA 1 cut(s) 99
MflI RGATCY 1 cut(s) 803
MhlI GDGCHC 3 cut(s) 391, 686, 751
MlsI TGGCCA 1 cut(s) 531
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 6 cut(s) 89, 193, 320, 439, 513, 805
MmeI TCCRAC 2 cut(s) 64, 833
MnlI CCTC 3 cut(s) 183, 224, 811
Mox20I TGGCCA 1 cut(s) 531
MreI CGCCGGCG 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 531
MseI TTAA 1 cut(s) 838
MslI CAYNNNNRTG 2 cut(s) 257, 776
Msp20I TGGCCA 1 cut(s) 531
MspA1I CMGCKG 2 cut(s) 67, 698
MspR9I CCNGG 6 cut(s) 18, 51, 473, 533, 728, 752
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 5 cut(s) 18, 473, 533, 728, 752
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 8 cut(s) 22, 138, 272, 335, 464, 599, 608, 695
NaeI GCCGGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 51
NdeII GATC 2 cut(s) 354, 803
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 4 cut(s) 336, 426, 496, 622
NlaIV GGNNCC 6 cut(s) 513, 684, 735, 748, 760, 766
NmuCI GTSAC 2 cut(s) 505, 580
NspI RCATGY 3 cut(s) 336, 426, 496
OliI CACNNNNGTG 1 cut(s) 776
PaeI GCATGC 2 cut(s) 336, 426
PasI CCCWGGG 1 cut(s) 472
PciI ACATGT 1 cut(s) 492
PctI GAATGC 1 cut(s) 157
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 8, 361
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 6 cut(s) 27, 126, 268, 331, 469, 697
PleI GAGTC 6 cut(s) 89, 193, 319, 439, 512, 805
PmaCI CACGTG 2 cut(s) 162, 180
PmlI CACGTG 2 cut(s) 162, 180
PpsI GAGTC 6 cut(s) 89, 193, 319, 439, 512, 805
Ppu21I YACGTR 2 cut(s) 162, 180
PscI ACATGT 1 cut(s) 492
PshAI GACNNNNGTC 1 cut(s) 449
Psp1406I AACGTT 1 cut(s) 248
Psp6I CCWGG 5 cut(s) 16, 471, 531, 726, 750
PspCI CACGTG 2 cut(s) 162, 180
PspFI CCCAGC 2 cut(s) 742, 755
PspGI CCWGG 5 cut(s) 16, 471, 531, 726, 750
PspN4I GGNNCC 6 cut(s) 513, 684, 735, 748, 760, 766
PspOMI GGGCCC 1 cut(s) 682
PspPI GGNCC 7 cut(s) 278, 373, 641, 682, 683, 733, 759
PsrI GAACNNNNNNTAC 2 cut(s) 281, 313
PsuI RGATCY 1 cut(s) 803
RsaI GTAC 2 cut(s) 299, 482
RsaNI GTAC 2 cut(s) 298, 481
RseI CAYNNNNRTG 2 cut(s) 257, 776
SaqAI TTAA 1 cut(s) 838
SatI GCNGC 6 cut(s) 26, 125, 267, 330, 468, 696
Sau3AI GATC 2 cut(s) 354, 803
Sau96I GGNCC 7 cut(s) 278, 373, 641, 682, 683, 733, 759
SchI GAGTC 6 cut(s) 89, 193, 320, 439, 513, 805
ScrFI CCNGG 6 cut(s) 18, 51, 473, 533, 728, 752
SduI GDGCHC 3 cut(s) 391, 686, 751
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 706
SgrAI CRCCGGYG 2 cut(s) 28, 40
SinI GGWCC 2 cut(s) 278, 641
SmiMI CAYNNNNRTG 2 cut(s) 257, 776
SmlI CTYRAG 2 cut(s) 447, 545
SmoI CTYRAG 2 cut(s) 447, 545
SphI GCATGC 2 cut(s) 336, 426
SsiI CCGC 7 cut(s) 26, 65, 125, 220, 468, 501, 696
SspI AATATT 1 cut(s) 628
StyD4I CCNGG 6 cut(s) 16, 49, 471, 531, 726, 750
TaaI ACNGT 2 cut(s) 511, 616
TaiI ACGT 3 cut(s) 164, 182, 251
TaqI TCGA 1 cut(s) 659
TatI WGTACW 1 cut(s) 297
TauI GCSGC 4 cut(s) 28, 127, 470, 698
TfiI GAWTC 2 cut(s) 8, 361
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 505, 580
TseI GCWGC 2 cut(s) 266, 329
Tsp45I GTSAC 2 cut(s) 505, 580
TspDTI ATGAA 3 cut(s) 241, 541, 677
TspRI CASTG 1 cut(s) 589
Van91I CCANNNNNTGG 1 cut(s) 650
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 2 cut(s) 278, 641
XceI RCATGY 3 cut(s) 336, 426, 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.