Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8400175.1

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1022

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8400175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 601 bp

atgaatccggtccggactttggggccggcagtggctgcaggacattataagtcactgtggatctacttggttgccccaagacttggtgctttagctggtgctgctgcccacacagctgcgaagctctcagaaatccgaccaaaccagcagatccatgatgccagtaatgatgagactacaccacaacctcgcattcatttccccccagacaaatctccttaccggacaggggactgcgaccggcagctttggccatggcggcgtctcttgcccttcaatggccggcagcttgcttggttgctcctaaacccaaacgatggcctgcatttcttgtcagaatcatctgctatagccaacgaagccaactccaagggtgatattgttcattccaccggagaattcattgccgatcgtaccctccctaagaaggccatcaacctcgacgctacagcggcctgtgtgccgtctagcaggtcggttctttttggcaatgatcgggtctcctctgtgatgttcacgagtggcggcactatgggtcatcatactgcgctcggggattggtcatggccggtgttgcagatgcttctaaagcttcaaatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

200

Amino Acids

21.91

Weight (kDa)

9.03

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	462
AccB7I	CCANNNNNTGG	2 cut(s)	83, 317
AccIII	TCCGGA	1 cut(s)	12
AciI	CCGC	3 cut(s)	259, 452, 525
AclWI	GGATC	2 cut(s)	68, 145
AcoI	YGGCCR	3 cut(s)	251, 280, 566
AcsI	RAATTY	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	262
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	6 cut(s)	19, 83, 229, 278, 317, 427
AgsI	TTSAA	2 cut(s)	277, 596
AluBI	AGCT	6 cut(s)	95, 116, 124, 247, 289, 592
AluI	AGCT	6 cut(s)	95, 116, 124, 247, 289, 592
Alw26I	GTCTC	3 cut(s)	167, 269, 505
AlwI	GGATC	2 cut(s)	68, 145
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	12
AoxI	GGCC	7 cut(s)	23, 251, 280, 319, 429, 453, 566
ApeKI	GCWGC	6 cut(s)	35, 101, 104, 116, 244, 286
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	10, 23
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	253
BauI	CACGAG	1 cut(s)	517
BbvI	GCAGC	6 cut(s)	22, 88, 91, 103, 256, 298
BccI	CCATC	2 cut(s)	311, 440
BceAI	ACGGC	1 cut(s)	448
BcoDI	GTCTC	3 cut(s)	167, 269, 505
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	3 cut(s)	36, 348, 447
BfuAI	ACCTGC	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	9 cut(s)	36, 102, 105, 117, 245, 260, 287, 453, 526
BlsI	GCNGC	9 cut(s)	37, 103, 106, 118, 246, 261, 288, 454, 527
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	10, 23
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	2 cut(s)	148, 570
BsaHI	GRCGYC	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	254, 369
BsaWI	WCCGGW	4 cut(s)	7, 12, 222, 392
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 83, 229, 278, 317, 427
Bse118I	RCCGGY	4 cut(s)	25, 240, 282, 568
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	402, 496
BseAI	TCCGGA	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	254, 369
BseLI	CCNNNNNNNGG	6 cut(s)	19, 83, 229, 278, 317, 427
BseMI	GCAATG	2 cut(s)	402, 496
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	6 cut(s)	22, 88, 91, 103, 256, 298
Bsh1285I	CGRYCG	2 cut(s)	241, 412
BshFI	GGCC	7 cut(s)	25, 253, 282, 321, 431, 455, 568
BsiEI	CGRYCG	2 cut(s)	241, 412
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	8 cut(s)	8, 13, 26, 223, 241, 283, 393, 569
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	6 cut(s)	19, 83, 229, 278, 317, 427
BsmAI	GTCTC	3 cut(s)	167, 269, 505
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	7 cut(s)	25, 253, 282, 321, 431, 455, 568
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	551
Bsp13I	TCCGGA	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	60, 150, 409, 493
Bsp19I	CCATGG	1 cut(s)	254
BspACI	CCGC	3 cut(s)	259, 452, 525
BspANI	GGCC	7 cut(s)	25, 253, 282, 321, 431, 455, 568
BspCNI	CTCAG	1 cut(s)	140
BspEI	TCCGGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	2 cut(s)	68, 145
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	402, 496
BsrFI	RCCGGY	4 cut(s)	25, 240, 282, 568
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	4 cut(s)	25, 240, 282, 568
BssECI	CCNNGG	2 cut(s)	254, 369
BssMI	GATC	4 cut(s)	60, 150, 409, 493
BssNI	GRCGYC	1 cut(s)	262
BssSI	CACGAG	1 cut(s)	517
BssT1I	CCWWGG	2 cut(s)	254, 369
Bst2BI	CACGAG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	27, 284, 291, 323
BstDEI	CTNAG	2 cut(s)	127, 423
BstDSI	CCRYGG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	63, 153, 412, 496
BstMAI	GTCTC	3 cut(s)	167, 269, 505
BstMBI	GATC	4 cut(s)	60, 150, 409, 493
BstMCI	CGRYCG	2 cut(s)	241, 412
BstSFI	CTRYAG	3 cut(s)	36, 348, 447
BstV1I	GCAGC	6 cut(s)	22, 88, 91, 103, 256, 298
BstX2I	RGATCY	2 cut(s)	60, 150
BstYI	RGATCY	2 cut(s)	60, 150
BsuRI	GGCC	7 cut(s)	25, 253, 282, 321, 431, 455, 568
BtgI	CCRYGG	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 53
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	27, 284, 291, 323
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	4 cut(s)	25, 240, 282, 568
Cfr13I	GGNCC	2 cut(s)	10, 23
CpoI	CGGWCCG	1 cut(s)	10
CseI	GACGC	2 cut(s)	251, 452
Csp6I	GTAC	1 cut(s)	414
CspI	CGGWCCG	1 cut(s)	10
CviAII	CATG	3 cut(s)	155, 255, 564
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	127, 423
DpnI	GATC	4 cut(s)	62, 152, 411, 495
DpnII	GATC	4 cut(s)	60, 150, 409, 493
EaeI	YGGCCR	3 cut(s)	251, 280, 566
Eco130I	CCWWGG	2 cut(s)	254, 369
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	398
EcoT14I	CCWWGG	2 cut(s)	254, 369
ErhI	CCWWGG	2 cut(s)	254, 369
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	3 cut(s)	158, 258, 567
FaiI	YATR	7 cut(s)	48, 156, 256, 350, 533, 543, 565
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	154, 254, 563
Fnu4HI	GCNGC	9 cut(s)	36, 102, 105, 117, 245, 260, 287, 453, 526
Fsp4HI	GCNGC	9 cut(s)	36, 102, 105, 117, 245, 260, 287, 453, 526
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	9 cut(s)	36, 102, 105, 117, 245, 260, 287, 453, 526
HaeIII	GGCC	7 cut(s)	25, 253, 282, 321, 431, 455, 568
HapII	CCGG	8 cut(s)	8, 13, 26, 223, 241, 283, 393, 569
HgaI	GACGC	2 cut(s)	251, 452
HhaI	GCGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	158, 258, 567
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	4, 338
HpaII	CCGG	8 cut(s)	8, 13, 26, 223, 241, 283, 393, 569
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	3 cut(s)	130, 137, 337
Hpy188III	TCNNGA	2 cut(s)	13, 517
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	283, 421
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	38, 325, 577
HpyF3I	CTNAG	2 cut(s)	127, 423
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	3 cut(s)	158, 258, 567
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	12
KroI	GCCGGC	2 cut(s)	25, 282
KroNI	GCCGGC	2 cut(s)	27, 284
Kzo9I	GATC	4 cut(s)	60, 150, 409, 493
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	6 cut(s)	22, 88, 91, 103, 256, 298
LweI	GCATC	2 cut(s)	148, 570
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	4 cut(s)	62, 152, 411, 495
MboI	GATC	4 cut(s)	60, 150, 409, 493
MflI	RGATCY	2 cut(s)	60, 150
MlsI	TGGCCA	1 cut(s)	253
MluCI	AATT	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	198, 428, 449, 514
Mox20I	TGGCCA	1 cut(s)	253
MroI	TCCGGA	1 cut(s)	12
MroNI	GCCGGC	2 cut(s)	25, 282
MscI	TGGCCA	1 cut(s)	253
Msp20I	TGGCCA	1 cut(s)	253
MspA1I	CMGCKG	2 cut(s)	116, 452
MspI	CCGG	8 cut(s)	8, 13, 26, 223, 241, 283, 393, 569
Mva1269I	GAATGC	1 cut(s)	192
NaeI	GCCGGC	2 cut(s)	27, 284
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	4 cut(s)	60, 150, 409, 493
NgoMIV	GCCGGC	2 cut(s)	25, 282
NlaIII	CATG	3 cut(s)	158, 258, 567
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	192
PdiI	GCCGGC	2 cut(s)	27, 284
PfeI	GAWTC	2 cut(s)	4, 338
PflMI	CCANNNNNTGG	2 cut(s)	83, 317
PkrI	GCNGC	9 cut(s)	37, 103, 106, 118, 246, 261, 288, 454, 527
Ple19I	CGATCG	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	10, 23
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	60, 150
PvuI	CGATCG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
Rsr2I	CGGWCCG	1 cut(s)	10
RsrII	CGGWCCG	1 cut(s)	10
SatI	GCNGC	9 cut(s)	36, 102, 105, 117, 245, 260, 287, 453, 526
Sau3AI	GATC	4 cut(s)	60, 150, 409, 493
Sau96I	GGNCC	2 cut(s)	10, 23
SetI	ASST	9 cut(s)	97, 118, 126, 190, 249, 291, 441, 476, 594
SfaNI	GCATC	2 cut(s)	148, 570
SfcI	CTRYAG	3 cut(s)	36, 348, 447
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	3 cut(s)	259, 452, 525
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	2 cut(s)	254, 369
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	441
TasI	AATT	1 cut(s)	398
TauI	GCSGC	3 cut(s)	262, 455, 528
TfiI	GAWTC	2 cut(s)	4, 338
TscAI	CASTG	2 cut(s)	36, 60
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	6 cut(s)	35, 101, 104, 116, 244, 286
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	4 cut(s)	17, 185, 374, 391
TspRI	CASTG	2 cut(s)	36, 60
Van91I	CCANNNNNTGG	2 cut(s)	83, 317
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	398
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.